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No Evidence for Immune-Gene Specific Signals of Selection in Termites
bioRxiv preprint doi: https://doi.org/10.1101/783738; this version posted September 26, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. No evidence for immune-gene specific signals of selection in termites 1Running title: Selection on termite immune genes 2Karen Meusemann1,2, Judith Korb¹, Maximilian Schughart¹, Fabian Staubach1* 31Evolutionary Biology & Ecology, Biology I (Animal Zoology), University of Freiburg, Freiburg 4(Brsg.), Germany 52Australian National Insect Collection, CSIRO, Acton, Canberra, ACT, Australia 6* Correspondence: 7Fabian Staubach [email protected] 9 10Life Science Identifiers (as available Zoobank) 11Ephemera danica: 12urn:lsid:zoobank.org:act:06633F75-4809-4BB3-BDCB-6270795368D5 13Coptotermes sp. 14urn:lsid:zoobank.org:pub:D6724B7F-F27A-47DC-A4FC-12859ECA0C71 15Blattella germanica: 16rn:lsid:zoobank.org:pub:1EA126BA-E9D2-4AA6-8202-26BA5B09B8AD 17Locusta migratoria 18urn:lsid:zoobank.org:pub:D792A09E-844A-412A-BFCA-5293F8388F8C 19Periplaneta americana (Blatta americana): 20urn:lsid:zoobank.org:act:95113A55-4C6D-4DC7-A0E5-620BACADFFE5 21Apis mellifera: 22urn:lsid:zoobank.org:act:9082C709-6347-4768-A0DC-27DC44400CB2 23Bombyx mori (Phalæna (Bombyx) mori) 24urn:lsid:zoobank.org:act:215466E3-E77F-46E9-8097-372837D7A375 25Drosophila melanogaster: 26urn:lsid:zoobank.org:act:5B39F0AA-270D-4AA8-B9A3-C36A3A265910 27 28Keywords: immunity, social insects, termites, selection, comparative genomics 29Abstract 30It has been hypothesized that selection pressure from pathogens plays an important role in shaping 31social evolution. Social behaviour, in particular brood care, is associated with pathogen pressure in 32wood-dwelling “lower” termites. Yet, generally pathogen pressure is low in wood-dwelling termite 33species that never leave the nest except for the mating flight. -
Megafauna Extinction, Tree Species Range Reduction, and Carbon Storage in Amazonian Forests
Ecography 39: 194–203, 2016 doi: 10.1111/ecog.01587 © 2015 The Authors. Ecography © 2015 Nordic Society Oikos Subject Editor: Yadvinder Mahli. Editor-in-Chief: Nathan J. Sanders. Accepted 27 September 2015 Megafauna extinction, tree species range reduction, and carbon storage in Amazonian forests Christopher E. Doughty, Adam Wolf, Naia Morueta-Holme, Peter M. Jørgensen, Brody Sandel, Cyrille Violle, Brad Boyle, Nathan J. B. Kraft, Robert K. Peet, Brian J. Enquist, Jens-Christian Svenning, Stephen Blake and Mauro Galetti C. E. Doughty ([email protected]), Environmental Change Inst., School of Geography and the Environment, Univ. of Oxford, South Parks Road, Oxford, OX1 3QY, UK. – A. Wolf, Dept of Ecology and Evolutionary Biology, Princeton Univ., Princeton, NJ 08544, USA. – N. Morueta-Holme, Dept of Integrative Biology, Univ. of California – Berkeley, CA 94720, USA. – B. Sandel, J.-C. Svenning and NM-H, Section for Ecoinformatics and Biodiversity, Dept of Bioscience, Aarhus Univ., Ny Munkegade 114, DK-8000 Aarhus C, Denmark. – P. M. Jørgensen, Missouri Botanical Garden, PO Box 299, St Louis, MO 63166-0299, USA. – C. Violle, CEFE UMR 5175, CNRS – Univ. de Montpellier – Univ. Paul-Valéry Montpellier – EPHE – 1919 route de Mende, FR-34293 Montpellier Cedex 5, France. – B. Boyle and B. J. Enquist, Dept of Ecology and Evolutionary Biology, Univ. of Arizona, Tucson, AZ 85721, USA. – N. J. B. Kraft, Dept of Biology, Univ. of Maryland, College Park, MD 20742, USA. BJE also at: The Santa Fe inst., 1399 Hyde Park Road, Santa Fe, NM 87501, USA. – R. K. Peet, Dept of Biology, Univ. of North Carolina, Chapel Hill, NC 27599-3280, USA. -
Pleistocene Mammals and Paleoecology of the Western Amazon
PLEISTOCENE MAMMALS AND PALEOECOLOGY OF THE WESTERN AMAZON By ALCEU RANCY A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 1991 . To Cleusa, Bianca, Tiago, Thomas, and Nono Saul (Pistolin de Oro) . ACKNOWLEDGMENTS This work received strong support from John Eisenberg (chairman) and David Webb, both naturalists, humanists, and educators. Both were of special value, contributing more than the normal duties as members of my committee. Bruce MacFadden provided valuable insights at several periods of uncertainty. Ronald Labisky and Kent Redford also provided support and encouragement. My field work in the western Amazon was supported by several grants from the Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq) , and the Universidade Federal do Acre (UFAC) , Brazil. I also benefitted from grants awarded to Ken Campbell and Carl Frailey from the National Science Foundation (NSF) I thank Daryl Paul Domning, Jean Bocquentin Villanueva, Jonas Pereira de Souza Filho, Ken Campbell, Jose Carlos Rodrigues dos Santos, David Webb, Jorge Ferigolo, Carl Frailey, Ernesto Lavina, Michael Stokes, Marcondes Costa, and Ricardo Negri for sharing with me fruitful and adventurous field trips along the Amazonian rivers. The CNPq and the Universidade Federal do Acre, supported my visit to the. following institutions (and colleagues) to examine their vertebrate collections: iii . ; ; Universidade do Amazonas, Manaus -
The Mayfly Newsletter: Vol
Volume 20 | Issue 2 Article 1 1-9-2018 The aM yfly Newsletter Donna J. Giberson The Permanent Committee of the International Conferences on Ephemeroptera, [email protected] Follow this and additional works at: https://dc.swosu.edu/mayfly Part of the Biology Commons, Entomology Commons, Systems Biology Commons, and the Zoology Commons Recommended Citation Giberson, Donna J. (2018) "The aM yfly eN wsletter," The Mayfly Newsletter: Vol. 20 : Iss. 2 , Article 1. Available at: https://dc.swosu.edu/mayfly/vol20/iss2/1 This Article is brought to you for free and open access by the Newsletters at SWOSU Digital Commons. It has been accepted for inclusion in The Mayfly eN wsletter by an authorized editor of SWOSU Digital Commons. An ADA compliant document is available upon request. For more information, please contact [email protected]. The Mayfly Newsletter Vol. 20(2) Winter 2017 The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera In this issue Project Updates: Development of new phylo- Project Updates genetic markers..................1 A new study of Ephemeroptera Development of new phylogenetic markers to uncover island in North West Algeria...........3 colonization histories by mayflies Sereina Rutschmann1, Harald Detering1 & Michael T. Monaghan2,3 Quest for a western mayfly to culture...............................4 1Department of Biochemistry, Genetics and Immunology, University of Vigo, Spain 2Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany 3 Joint International Conf. Berlin Center for Genomics in Biodiversity Research, Berlin, Germany Items for the silent auction at Email: [email protected]; [email protected]; [email protected] the Aracruz meeting (to sup- port the scholarship fund).....6 The diversification of evolutionary young species (<20 million years) is often poorly under- stood because standard molecular markers may not accurately reconstruct their evolutionary How to donate to the histories. -
La Brea and Beyond: the Paleontology of Asphalt-Preserved Biotas
La Brea and Beyond: The Paleontology of Asphalt-Preserved Biotas Edited by John M. Harris Natural History Museum of Los Angeles County Science Series 42 September 15, 2015 Cover Illustration: Pit 91 in 1915 An asphaltic bone mass in Pit 91 was discovered and exposed by the Los Angeles County Museum of History, Science and Art in the summer of 1915. The Los Angeles County Museum of Natural History resumed excavation at this site in 1969. Retrieval of the “microfossils” from the asphaltic matrix has yielded a wealth of insect, mollusk, and plant remains, more than doubling the number of species recovered by earlier excavations. Today, the current excavation site is 900 square feet in extent, yielding fossils that range in age from about 15,000 to about 42,000 radiocarbon years. Natural History Museum of Los Angeles County Archives, RLB 347. LA BREA AND BEYOND: THE PALEONTOLOGY OF ASPHALT-PRESERVED BIOTAS Edited By John M. Harris NO. 42 SCIENCE SERIES NATURAL HISTORY MUSEUM OF LOS ANGELES COUNTY SCIENTIFIC PUBLICATIONS COMMITTEE Luis M. Chiappe, Vice President for Research and Collections John M. Harris, Committee Chairman Joel W. Martin Gregory Pauly Christine Thacker Xiaoming Wang K. Victoria Brown, Managing Editor Go Online to www.nhm.org/scholarlypublications for open access to volumes of Science Series and Contributions in Science. Natural History Museum of Los Angeles County Los Angeles, California 90007 ISSN 1-891276-27-1 Published on September 15, 2015 Printed at Allen Press, Inc., Lawrence, Kansas PREFACE Rancho La Brea was a Mexican land grant Basin during the Late Pleistocene—sagebrush located to the west of El Pueblo de Nuestra scrub dotted with groves of oak and juniper with Sen˜ora la Reina de los A´ ngeles del Rı´ode riparian woodland along the major stream courses Porciu´ncula, now better known as downtown and with chaparral vegetation on the surrounding Los Angeles. -
CONTRIBUTIONS to a REVISED SPECIES CONSPECT of the EPHEMEROPTERA FAUNA from ROMANIA (Mayfliesyst)
Studii şi Cercetări Mai 2014 Biologie 23/2 20-30 Universitatea”Vasile Alecsandri” din Bacău CONTRIBUTIONS TO A REVISED SPECIES CONSPECT OF THE EPHEMEROPTERA FAUNA FROM ROMANIA (mayfliesyst) Florian S. Prisecaru, Ionel Tabacaru, Maria Prisecaru, Ionuţ Stoica, Maria Călin Key words: Ephemeroptetera, systematic classification, new species, Romania. INTRODUCTION wrote the chapter Order Ephemeroptera (2007, pp.235-236) and mentioned 108 species in the list of In the volume „Lista faunistică a României Ephemeroptera from our country, indicating the (specii terestre şi de apă dulce) [List of Romanian authors of their citation. It is the first time since the fauna (terrestrial and freshwater species)], editor-in- publication of a fauna volume (Bogoescu, 1958) that chief Anna Oana Moldovan from "Emil Racovita" such a list has been made public. Here is this list Institute of Speleology, Cluj-Napoca, Milca Petrovici followed by our observations. 0rder EPHEMEROPTERA Superfamily BAETISCOIDEA Family PROSOPISTOMATIDAE Genus Species Author, year 1. Prosopistoma pennigerum Mueller, 1785 Superfamily BAETOIDEA Family AMETROPODIDAE 2. Ametropus fragilis Albarda, 1878 Family BAETIDAE 3. Acentrella hyaloptera Bogoescu, 1951 4. Acentrella inexpectata Tschenova, 1928 5. Acentrella sinaica Bogoescu, 1931 6. Baetis alpinus Pictet, 1843 7. Baetis buceratus Eaton, 1870 8. Baetis fuscatus Linnaeus, 1761 9. Baetis gracilis Bogoescu and Tabacaru, 1957 10. Baetis lutheri Eaton, 1885 11. Baetis melanonyx Bogoescu, 1933 12. Baetis muticus Bürmeister, 1839 13. Baetis niger Linnaeus, 1761 14. Baetis rhodani Pictet, 1843 15. Baetis scambus Eaton, 1870 16. Baetis tenax Eaton, 1870 17. Baetis tricolor Tschenova,1828 18. Baetis vernus Curtis, 1864 19. Centroptilum luteolum Müller, 1775 20. Cloeon dipterum Linné, 1761 21. -
From Fossils to Phylogenies Part 1: Mass Spectrometry
From Fossils to Phylogenies Part 1: Mass Spectrometry Written by: Baylee Goodwin, Dane Besser, Stephen A. Ramsey Dinosaur Vocabulary Words Chemistry Vocabulary Words Biology Vocabulary Words Fossilization Mass spectrometry Central Dogma of biology T. rex Mass-to-charge ratio Proteins Mastodon Ion Peptide Hadrosaur Relative abundance Protein Spectrum Collagen Background: Imagine it is time for your lunch break. You take your sandwich outside and you sit down to enjoy your lunch with a beautiful view of Montana’s Rocky Mountains. As you look up, you see what appears to be a bone sticking out of the side of a rock wall. That bone just so happens to be part of one of the best-preserved Tyrannosaurus rex fossils ever found. If you are Bob Harmon, a field crew chief of the Museum of the Rockies, that is exactly what happened. In the year 2000 Bob Harmon discovered a 68 million-year-old fossil, which is now named “B-Rex” after him. Tyrannosaurus rex lived 65 to 70 million years ago, in what is now the western parts of the United States. They were among the last of the large dinosaurs that lived on Earth. In certain rare cases, dinosaur bones were trapped in the Earth and were preserved until the present day, through a process called fossilization. Much of what we know about dinosaurs comes from the scientific study of the shape, appearance, composition, and location of fossils. Dinosaurs' bodies were made up of the same general types of biological building blocks seen in all animals, such as tissues, cells, and proteins. -
SUPPLEMENTARY INFORMATION: Tables, Figures and References
Samuels et al. Evolution of the patellar sesamoid bone in mammals SUPPLEMENTARY INFORMATION: Tables, Figures and References Supplementary Table S1: Mammals$ Higher taxa Genus sp. Estimated. age of Patellar Comments# (partial) specimen, location state 0/1/2 (absent/ ‘patelloid’/ present) Sinoconodonta Sinoconodon Jurassic 0 Patellar groove absent, suggests no rigneyi (Kielan- patella Jaworowska, Cifelli & Luo, Sinoconodon is included on our 2004) phylogeny within tritylodontids. Morganucodonta Megazostrodon Late Triassic, southern 0 rudnerae (Jenkins Africa & Parrington, 1976) Morganucodonta Eozostrodon sp. Late Triassic, Wales 0 Asymmetric patellar groove, (Jenkins et al., specimens disarticulated so it is hard 1976) to assess the patella but appears absent Docodonta Castorocauda 164 Mya, mid-Jurassic, 0 Semi-aquatic adaptations lutrasimilis (Ji, China Luo, Yuan et al., 2006) Docodonta Agilodocodon 164 Mya, mid-Jurassic, 0 scansorius China (Meng, Ji, Zhang et al., 2015) Docodonta Docofossor 160 Mya 0 brachydactylus (Luo, Meng, Ji et al., 2015) Docodonta Haldanodon 150-155 Mya, Late 0 Shallow patellar groove exspectatus Jurassic, Portugal (Martin, 2005b) Australosphenida Asfaltomylos Mid-Jurassic, South ? Postcranial material absent patagonicus America (Martin, 2005a) Australosphenida Ornithorhynchus Extant 2 Platypus, genome sequenced Monotremata anatinus (Warren, Hillier, Marshall Graves et (Herzmark, 1938; al., 2008) Rowe, 1988) Samuels et al. Australosphenida Tachyglossus + Extant 2 Echidnas Monotremata Zaglossus spp. (Herzmark, 1938; Rowe, 1988) Mammaliaformes Fruitafossor 150 Mya, Late Jurassic, 0 Phylogenetic status uncertain indet. windscheffeli (Luo Colorado & Wible, 2005) Mammaliaformes Volaticotherium Late Jurassic/Early ? Hindlimb material incomplete indet. antiquus (Meng, Cretaceous Hu, Wang et al., 2006) Eutriconodonta Jeholodens 120-125 Mya, Early 0 Poorly developed patellar groove jenkinsi (Ji, Luo Cretaceous, China & Ji, 1999) Eutriconodonta Gobiconodon spp. -
The Neogene Record of Northern South American Native Ungulates
Smithsonian Institution Scholarly Press smithsonian contributions to paleobiology • number 101 Smithsonian Institution Scholarly Press The Neogene Record of Northern South American Native Ungulates Juan D. Carrillo, Eli Amson, Carlos Jaramillo, Rodolfo Sánchez, Luis Quiroz, Carlos Cuartas, Aldo F. Rincón, and Marcelo R. Sánchez-Villagra SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of “diffusing knowledge” was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: “It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge.” This theme of basic research has been adhered to through the years in thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Botany Smithsonian Contributions to History and Technology Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Museum Conservation Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology In these series, the Smithsonian Institution Scholarly Press (SISP) publishes small papers and full-scale monographs that report on research and collections of the Institution’s museums and research centers. The Smithsonian Contributions Series are distributed via exchange mailing lists to libraries, universities, and similar institutions throughout the world. Manuscripts intended for publication in the Contributions Series undergo substantive peer review and evaluation by SISP’s Editorial Board, as well as evaluation by SISP for compliance with manuscript preparation guidelines (available at https://scholarlypress.si.edu). -
The Brazilian Megamastofauna of the Pleistocene/Holocene Transition and Its Relationship with the Early Human Settlement of the Continent
Earth-Science Reviews 118 (2013) 1–10 Contents lists available at SciVerse ScienceDirect Earth-Science Reviews journal homepage: www.elsevier.com/locate/earscirev The Brazilian megamastofauna of the Pleistocene/Holocene transition and its relationship with the early human settlement of the continent Alex Hubbe a,b,⁎, Mark Hubbe c,d, Walter A. Neves a a Laboratório de Estudos Evolutivos Humanos, Departamento de Genética e Biologia Evolutiva, Instituto de Biociências, Universidade de São Paulo, Rua do Matão 277, São Paulo, SP. 05508-090, Brazil b Instituto do Carste, Rua Barcelona 240/302, Belo Horizonte, MG. 30360-260, Brazil c Department of Anthropology, The Ohio State University, 174W 18th Avenue, Columbus, OH. 43210, United States d Instituto de Investigaciones Arqueológicas y Museo, Universidad Católica del Norte, Calle Gustavo LePaige 380, San Pedro de Atacama, 141-0000, Chile article info abstract Article history: One of the most intriguing questions regarding the Brazilian Late Quaternary extinct megafauna and Homo Received 4 October 2012 sapiens is to what extent they coexisted and how humans could have contributed to the former's extinction. Accepted 18 January 2013 The aim of this article is to review the chronological and archaeological evidences of their coexistence in Available online 25 January 2013 Brazil and to evaluate the degree of direct interaction between them. Critical assessment of the Brazilian megafauna chronological data shows that several of the late Pleistoscene/early Holocene dates available so Keywords: far cannot be considered reliable, but the few that do suggest that at least two species (Catonyx cuvieri, Quaternary Mammals ground sloth; Smilodon populator, saber-toothed cat) survived until the beginning of the Holocene in Southeast Extinction Brazil. -
Distribution of Mayfly Species in North America List Compiled from Randolph, Robert Patrick
Page 1 of 19 Distribution of mayfly species in North America List compiled from Randolph, Robert Patrick. 2002. Atlas and biogeographic review of the North American mayflies (Ephemeroptera). PhD Dissertation, Department of Entomology, Purdue University. 514 pages and information presented at Xerces Mayfly Festival, Moscow, Idaho June, 9-12 2005 Acanthametropodidae Ameletus ludens Needham Acanthametropus pecatonica (Burks) Canada—ON,NS,PQ. USA—IL,GA,SC,WI. USA—CT,IN,KY,ME,MO,NY,OH,PA,WV. Ameletus majusculus Zloty Analetris eximia Edmunds Canada—AB. Canada—AB ,SA. USA—MT,OR,WA. USA—UT,WY. Ameletus minimus Zloty & Harper USA—OR. Ameletidae Ameletus oregonenesis McDunnough Ameletus amador Mayo Canada—AB ,BC,SA. Canada—AB. USA—ID,MT,OR,UT. USA—CA,OR. Ameletus pritchardi Zloty Ameletus andersoni Mayo Canada—AB,BC. USA—OR,WA. Ameletus quadratus Zloty & Harper Ameletus bellulus Zloty USA—OR. Canada—AB. Ameletus shepherdi Traver USA—MT. Canada—BC. Ameletus browni McDunnough USA—CA,MT,OR. Canada—PQ Ameletus similior McDunnough USA—ME,PA,VT. Canada—AB,BC. Ameletus celer McDunnough USA—CO,ID,MT,OR,UT Canada—AB ,BC. Ameletus sparsatus McDunnough USA—CO,ID,MT,UT Canada—AB,BC,NWT. Ameletus cooki McDunnough USA—AZ,CO,ID,MT,NM,OR Canada—AB,BC. Ameletus subnotatus Eaton USA—CO,ID,MT,OR,WA. Canada—AB,BC,MB,NB,NF,ON,PQ. Ameletus cryptostimulus Carle USA—CO,UT,WY. USA—NC,NY,PA,SC,TN,VA,VT,WV. Ameletus suffusus McDunnough Ameletus dissitus Eaton Canada—AB,BC. USA—CA,OR. USA—ID,OR. Ameletus doddsianus Zloty Ameletus tarteri Burrows USA—AZ,CO,NM,NV,UT. -
Paleoecology and Radiocarbon Dating of the Pleistocene Megafauna of the Brazilian Intertropical Region
Quaternary Research 79 (2013) 61–65 Contents lists available at SciVerse ScienceDirect Quaternary Research journal homepage: www.elsevier.com/locate/yqres Paleoecology and radiocarbon dating of the Pleistocene megafauna of the Brazilian Intertropical Region Mário André Trindade Dantas a,b,⁎, Rodrigo Parisi Dutra a,b, Alexander Cherkinsky c, Daniel Costa Fortier b, Luciana Hiromi Yoshino Kamino d, Mario Alberto Cozzuol b, Adauto de Souza Ribeiro e, Fabiana Silva Vieira e a Programa de Pós-graduação em Ecologia, Conservação e Manejo da Vida Silvestre, Av. Antônio Carlos, 6627, CEP 31270-010, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil b Laboratório de Paleozoologia, Departamento de Biologia Geral, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, CEP 31270-010, Belo Horizonte, MG, Brazil c Center for Applied Isotope Studies, University of Georgia, Athens, GA 30602, USA d Programa de Pós-Graduação em Biologia Vegetal, Departamento de Botânica, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, CEP 31270-010, Belo Horizonte, MG, Brazil e Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Federal de Sergipe, Av Marechal Rondon s/n, Bairro Rosa Elze, CEP 49100-000, São Cristovão, SE, Brazil article info abstract Article history: During the Pleistocene a fauna composed of large (biomass>44 kg) and giant mammals (biomass>1000 kg) Received 8 April 2012 that are usually associated with open environments lived in the Brazilian Intertropical Region. We present Available online 23 October 2012 here new information concerning the paleoecology and chronology of some species of this megafauna. Carbon isotope analyses were performed for a better understanding of the paleoecology of the species Eremotherium Keywords: laurillardi (Lund, 1842), Notiomastodon platensis (Ameghino, 1888) and Toxodon platensis (Owen, 1849).