Chaetosphaeriaceae, a New Family for Chaetosphaeria and Its Relatives
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Generic Hyper-Diversity in Stachybotriaceae
Persoonia 36, 2016: 156–246 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X691582 Generic hyper-diversity in Stachybotriaceae L. Lombard1, J. Houbraken1, C. Decock2, R.A. Samson1, M. Meijer1, M. Réblová3, J.Z. Groenewald1, P.W. Crous1,4,5,6 Key words Abstract The family Stachybotriaceae was recently introduced to include the genera Myrothecium, Peethambara and Stachybotrys. Members of this family include important plant and human pathogens, as well as several spe- biodegraders cies used in industrial and commercial applications as biodegraders and biocontrol agents. However, the generic generic concept boundaries in Stachybotriaceae are still poorly defined, as type material and sequence data are not readily avail- human and plant pathogens able for taxonomic studies. To address this issue, we performed multi-locus phylogenetic analyses using partial indoor mycobiota gene sequences of the 28S large subunit (LSU), the internal transcribed spacer regions and intervening 5.8S multi-gene phylogeny nrRNA (ITS), the RNA polymerase II second largest subunit (rpb2), calmodulin (cmdA), translation elongation species concept factor 1-alpha (tef1) and β-tubulin (tub2) for all available type and authentic strains. Supported by morphological taxonomy characters these data resolved 33 genera in the Stachybotriaceae. These included the nine already established genera Albosynnema, Alfaria, Didymostilbe, Myrothecium, Parasarcopodium, Peethambara, Septomyrothecium, Stachybotrys and Xepicula. At the same time the generic names Melanopsamma, Memnoniella and Virgatospora were resurrected. Phylogenetic inference further showed that both the genera Myrothecium and Stachybotrys are polyphyletic resulting in the introduction of 13 new genera with myrothecium-like morphology and eight new genera with stachybotrys-like morphology. -
Ascomyceteorg 08-03 Ascomyceteorg
Podospora bullata, a new homothallic ascomycete from kangaroo dung in Australia Ann BELL Abstract: Podospora bullata sp. nov. is described and illustrated based on five kangaroo dung collections Dan MAHONEY from Australia. The species is placed in the genus Podospora based on its teleomorph morphology and its Robert DEBUCHY ITS sequence from a fertile homothallic axenic culture. Perithecial necks are adorned with prominent simple unswollen filiform flexuous and non-agglutinated greyish hairs. Ascospores are characterized by minute pe- dicels, lack of caudae and an enveloping frothy gelatinous material with bubble-like structures both in the Ascomycete.org, 8 (3) : 111-118. amorphous gel and attached to the ascospore dark cell. No anamorph was observed. Mai 2016 Keywords: coprophilous fungi, Lasiosphaeriaceae, Podospora, ribosomal DNA, taxonomy. Mise en ligne le 05/05/2016 Résumé : Podospora bullata sp. nov. est une nouvelle espèce qui a été trouvée sur cinq isolats provenant d’Australie et obtenus à partir de déjections de kangourou. Cette nouvelle espèce est décrite ici avec des il- lustrations. Cet ascomycète est placé dans le genre Podospora en se basant sur la séquence des ITS et sur l’aspect de son téléomorphe, en l’occurrence un individu homothallique fertile en culture axénique. Les cols des périthèces sont ornés par une touffe de longs poils grisâtres fins, flexueux, en majorité sans ramification et non agglutinés. Les ascospores sont caractérisées par de courts pédicelles et une absence d’appendices. Les ascospores matures sont noires et entourées par un mucilage contenant des inclusions ayant l’aspect de bulles, adjacentes à la paroi de l’ascospore. -
The Holomorph of Parasarcopodium (Stachybotryaceae), Introducing P
Phytotaxa 266 (4): 250–260 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2016 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.266.4.2 The holomorph of Parasarcopodium (Stachybotryaceae), introducing P. pandanicola sp. nov. on Pandanus sp. SAOWALUCK TIBPROMMA1,2,3,4,5, SARANYAPHAT BOONMEE2, NALIN N. WIJAYAWARDENE2,3,5, SAJEEWA S.N. MAHARACHCHIKUMBURA6, ERIC H. C. McKENZIE7, ALI H. BAHKALI8, E.B. GARETH JONES8, KEVIN D. HYDE1,2,3,4,5,8 & ITTHAYAKORN PROMPUTTHA9,* 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kun- ming 650201, Yunnan, People’s Republic of China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4World Agroforestry Centre, East and Central Asia, Kunming 650201, Yunnan, P. R. China 5Mushroom Research Foundation, 128 M.3 Ban Pa Deng T. Pa Pae, A. Mae Taeng, Chiang Mai 50150, Thailand 6Department of Crop Sciences, College of Agricultural and Marine Sciences Sultan Qaboos University, P.O. Box 34, AlKhoud 123, Oman 7Manaaki Whenua Landcare Research, Private Bag 92170, Auckland, New Zealand 8Botany and Microbiology Department, College of Science, King Saud University, Riyadh, KSA 11442, Saudi Arabia 9Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200, Thailand *Corresponding author: e-mail: [email protected] Abstract Collections of microfungi on Pandanus species (Pandanaceae) in Krabi, Thailand resulted in the discovery of a new species in the genus Parasarcopodium, producing both its sexual and asexual morphs. -
©2015 Stephen J. Miller ALL RIGHTS RESERVED
©2015 Stephen J. Miller ALL RIGHTS RESERVED USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS. By STEPHEN J MILLER A dissertation submitted to the Graduate School-New Brunswick Rutgers, The State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Plant Biology Written under the direction of Dr. Ning Zhang And approved by _____________________________________ _____________________________________ _____________________________________ _____________________________________ _____________________________________ New Brunswick, New Jersey October 2015 ABSTRACT OF THE DISSERTATION USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS BY STEPHEN J MILLER Dissertation Director: Dr. Ning Zhang Fungi are the second largest kingdom of eukaryotic life, composed of diverse and ecologically important organisms with pivotal roles and functions, such as decomposers, pathogens, and mutualistic symbionts. Fungal endophyte studies have increased rapidly over the past decade, using traditional culturing or by utilizing Next Generation Sequencing (NGS) to recover fastidious or rare taxa. Despite increasing interest in fungal endophytes, there is still an enormous amount of ecological diversity that remains poorly understood. In this dissertation, I explore the fungal endophyte biodiversity associated within two plant hosts (Cornus L. species) and (Panicum virgatum L.), create a NGS pipeline, facilitating comparison between traditional culturing method and culture- independent metagenomic method. The diversity and functions of fungal endophytes inhabiting leaves of woody plants in the temperate region are not well understood. I explored the fungal biodiversity in native Cornus species of North American and Japan using traditional culturing ii techniques. Samples were collected from regions with similar climate and comparison of fungi was done using two years of collection data. -
Using Phylogenetic Species Recognition to Delimit Species Boundaries Within Lasiosphaeria
Mycologia, 96(5), 2004, pp. 1106±1127. q 2004 by The Mycological Society of America, Lawrence, KS 66044-8897 Using phylogenetic species recognition to delimit species boundaries within Lasiosphaeria Andrew N. Miller1 Key words: Ascomycetes, b-tubulin, Cercophora, Botany Department, The Field Museum, 1400 S. Lake genealogical concordance phylogenetic species rec- Shore Drive, Chicago, Illinois 60605-2496 and ognition, ITS, LSU, morphological species recogni- University of Illinois at Chicago, Department of tion, phylogenetics, RPB2, Sordariales, species con- Biological Sciences, Chicago, Illinois 60607-7060 cepts, systematics Sabine M. Huhndorf Botany Department, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 INTRODUCTION The genus Lasiosphaeria previously included numer- Abstract: The genus Lasiosphaeria recently has been ous taxa possessing a broad range of ascomal, asco- circumscribed more narrowly to include ®ve mor- spore and anamorph morphologies. However, its cir- phospecies united by tomentose ascomata containing cumscription recently has been de®ned more nar- yellow centrum pigments. Species boundaries have rowly to include ®ve morphospecies possessing to- not been established and phylogenetic relationships mentose ascomata with yellow centrum pigments have not been clearly de®ned for these morphospe- (Miller and Huhndorf 2004a). The genus presently cies. To delimit species boundaries and determine includes the type, L. ovina (Pers. : Fr.) Ces. & de phylogenetic relationships among species, maximum Not., along with L. glabrata (Fr.) Munk, L. lanuginosa parsimony, maximum likelihood and Bayesian analy- (H. Crouan & P. Crouan) A.N. Mill. & Huhndorf, L. ses were conducted on sequence data from four nu- rugulosa (A.N. Mill. & Huhndorf) A.N. Mill. & Huhn- clear genes, the ribosomal internal transcribed spac- dorf, and L. -
Metabolites from Nematophagous Fungi and Nematicidal Natural Products from Fungi As an Alternative for Biological Control
Appl Microbiol Biotechnol (2016) 100:3799–3812 DOI 10.1007/s00253-015-7233-6 MINI-REVIEW Metabolites from nematophagous fungi and nematicidal natural products from fungi as an alternative for biological control. Part I: metabolites from nematophagous ascomycetes Thomas Degenkolb1 & Andreas Vilcinskas1,2 Received: 4 October 2015 /Revised: 29 November 2015 /Accepted: 2 December 2015 /Published online: 29 December 2015 # The Author(s) 2015. This article is published with open access at Springerlink.com Abstract Plant-parasitic nematodes are estimated to cause Keywords Phytoparasitic nematodes . Nematicides . global annual losses of more than US$ 100 billion. The num- Oligosporon-type antibiotics . Nematophagous fungi . ber of registered nematicides has declined substantially over Secondary metabolites . Biocontrol the last 25 years due to concerns about their non-specific mechanisms of action and hence their potential toxicity and likelihood to cause environmental damage. Environmentally Introduction beneficial and inexpensive alternatives to chemicals, which do not affect vertebrates, crops, and other non-target organisms, Nematodes as economically important crop pests are therefore urgently required. Nematophagous fungi are nat- ural antagonists of nematode parasites, and these offer an eco- Among more than 26,000 known species of nematodes, 8000 physiological source of novel biocontrol strategies. In this first are parasites of vertebrates (Hugot et al. 2001), whereas 4100 section of a two-part review article, we discuss 83 nematicidal are parasites of plants, mostly soil-borne root pathogens and non-nematicidal primary and secondary metabolites (Nicol et al. 2011). Approximately 100 species in this latter found in nematophagous ascomycetes. Some of these sub- group are considered economically important phytoparasites stances exhibit nematicidal activities, namely oligosporon, of crops. -
Morinagadepsin, a Depsipeptide from the Fungus Morinagamyces Vermicularis Gen. Et Comb. Nov
microorganisms Article Morinagadepsin, a Depsipeptide from the Fungus Morinagamyces vermicularis gen. et comb. nov. Karen Harms 1,2 , Frank Surup 1,2,* , Marc Stadler 1,2 , Alberto Miguel Stchigel 3 and Yasmina Marin-Felix 1,* 1 Department Microbial Drugs, Helmholtz Centre for Infection Research, Inhoffenstrasse 7, 38124 Braunschweig, Germany; [email protected] (K.H.); [email protected] (M.S.) 2 Institute of Microbiology, Technische Universität Braunschweig, Spielmannstrasse 7, 38106 Braunschweig, Germany 3 Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, C/ Sant Llorenç 21, 43201 Reus, Tarragona, Spain; [email protected] * Correspondence: [email protected] (F.S.); [email protected] (Y.M.-F.) Abstract: The new genus Morinagamyces is introduced herein to accommodate the fungus Apiosordaria vermicularis as inferred from a phylogenetic study based on sequences of the internal transcribed spacer region (ITS), the nuclear rDNA large subunit (LSU), and partial fragments of ribosomal polymerase II subunit 2 (rpb2) and β-tubulin (tub2) genes. Morinagamyces vermicularis was analyzed for the production of secondary metabolites, resulting in the isolation of a new depsipeptide named morinagadepsin (1), and the already known chaetone B (3). While the planar structure of 1 was elucidated by extensive 1D- and 2D-NMR analysis and high-resolution mass spectrometry, the absolute configuration of the building blocks Ala, Val, and Leu was determined as -L by Marfey’s method. The configuration of the 3-hydroxy-2-methyldecanyl unit was assigned as 22R,23R by Citation: Harms, K.; Surup, F.; Stadler, M.; Stchigel, A.M.; J-based configuration analysis and Mosher’s method after partial hydrolysis of the morinagadepsin Marin-Felix, Y. -
The Fungi of Slapton Ley National Nature Reserve and Environs
THE FUNGI OF SLAPTON LEY NATIONAL NATURE RESERVE AND ENVIRONS APRIL 2019 Image © Visit South Devon ASCOMYCOTA Order Family Name Abrothallales Abrothallaceae Abrothallus microspermus CY (IMI 164972 p.p., 296950), DM (IMI 279667, 279668, 362458), N4 (IMI 251260), Wood (IMI 400386), on thalli of Parmelia caperata and P. perlata. Mainly as the anamorph <it Abrothallus parmeliarum C, CY (IMI 164972), DM (IMI 159809, 159865), F1 (IMI 159892), 2, G2, H, I1 (IMI 188770), J2, N4 (IMI 166730), SV, on thalli of Parmelia carporrhizans, P Abrothallus parmotrematis DM, on Parmelia perlata, 1990, D.L. Hawksworth (IMI 400397, as Vouauxiomyces sp.) Abrothallus suecicus DM (IMI 194098); on apothecia of Ramalina fustigiata with st. conid. Phoma ranalinae Nordin; rare. (L2) Abrothallus usneae (as A. parmeliarum p.p.; L2) Acarosporales Acarosporaceae Acarospora fuscata H, on siliceous slabs (L1); CH, 1996, T. Chester. Polysporina simplex CH, 1996, T. Chester. Sarcogyne regularis CH, 1996, T. Chester; N4, on concrete posts; very rare (L1). Trimmatothelopsis B (IMI 152818), on granite memorial (L1) [EXTINCT] smaragdula Acrospermales Acrospermaceae Acrospermum compressum DM (IMI 194111), I1, S (IMI 18286a), on dead Urtica stems (L2); CY, on Urtica dioica stem, 1995, JLT. Acrospermum graminum I1, on Phragmites debris, 1990, M. Marsden (K). Amphisphaeriales Amphisphaeriaceae Beltraniella pirozynskii D1 (IMI 362071a), on Quercus ilex. Ceratosporium fuscescens I1 (IMI 188771c); J1 (IMI 362085), on dead Ulex stems. (L2) Ceriophora palustris F2 (IMI 186857); on dead Carex puniculata leaves. (L2) Lepteutypa cupressi SV (IMI 184280); on dying Thuja leaves. (L2) Monographella cucumerina (IMI 362759), on Myriophyllum spicatum; DM (IMI 192452); isol. ex vole dung. (L2); (IMI 360147, 360148, 361543, 361544, 361546). -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
PREFACE Phylogenetic Revision of Taxonomic Concepts in the Hypocreales and Other Ascomycota
PREFACE Phylogenetic revision of taxonomic concepts in the Following the lead primarily initiated by Lombard et al. (Stud. Hypocreales and other Ascomycota - A tribute to Mycol. 66, 2010), this approach was followed here by Gräfenhan et Gary J. Samuels al. and Schroers et al. in their revisions of parts of Fusarium sensu Wollenweber and Acremonium by Summerbell et al. This volume of Studies in Mycology is something of a successor Option 2 – Teleomorph priority with anamorphic species epithets. to another issue of the same journal published a decade ago, Transfer of anamorphic epithets to teleomorph genera for species "Molecules, Morphology and Classification: Towards Monophyletic that lack known teleomorphs. New teleomorph generic names Genera in the Ascomycetes’ (vol. 45, edited by Seifert, Gams, are described when teleomorphs are discovered, irrespective of Crous & Samuels 2000). In that issue, the authors grappled with whether a previously described anamorph generic name exists. questions of integrating the new phylogenetic information derived This option maintains the primacy of teleomorph names at both from DNA sequencing into a classification system that was already complicated by the need to accommodate fungal pleomorphy. In the genus and species rank. It was exercised in part by Chaverri the intervening time, mycologists have become less tentative about et al. in their revision of Neonectria sensu lato, and the associated handling this complexity. The present volume continues the trend of anamorph genera Cylindrocarpon and Campylocarpon. applying multigene phylogenetics to generic and species concepts, extending the higher taxonomic level studies of the Assembling the Option 3 – Teleomorph priority with earlier anamorph species Fungal Tree of Life project into a more finely resolved realm. -
Field Studies in the Lasiosphaeriaceae And
Field Studies in the Lasiosphaeriaceae and Helminthosphaeriaceae sensu lato. By Ann Bell and Daniel P. Mahoney. 2016. CBS-KNAW Fungal Biodiver- sity Centre, Utrecht, The Netherlands. Pp. 124, 80 figs (78 col.). [CBS Biodi- versity Series no. 15.] ISBN 978-94-91751-05-9. Price: 30 €. Zealand but also from visits to the USA. mycologists as well as professionals to take I am so glad that they did, as now we have an interest in these poorly known fungi. All BOOK NEWS a superbly colour-illustrated account of those working on fungi occurring on dung many of these fungi for the first time. They or dead wood should try and secure a copy. did, however, conclude on morphological The whole is superbly produced, as grounds that the primarily fungicolous we have now come to expect of CBS, but Helminthosphaeriacae appeared to be attention is drawn on the website to the indistinguishable from Lasiosphaeriaceae; it inevitable minor slips all works seem to have will be interesting to see if future molecular despite hours of proof-reading; these are studies can confirm that hypothesis. reproduced below1 (so those with copies can Four keys to the species are provided, annotate them accordingly. with main divisions based primarily on perithecial vestitures (the terminology of Bell A (1983) Dung Fungi: an illustrated guide to which is discussed and illustrated). Species coprophilous fungi in New Zealand. Wellington: descriptions are accompanied by two Victoria University Press. full-colour pages of illustrations, one of Bell A (2005) An Illustrated Guide to the exquisite coloured drawings and the other Coprophilous Ascomycetes of Australia [CBS of colour photographs, including ones in Biodiversity Series No. -
Fungal Allergy and Pathogenicity 20130415 112934.Pdf
Fungal Allergy and Pathogenicity Chemical Immunology Vol. 81 Series Editors Luciano Adorini, Milan Ken-ichi Arai, Tokyo Claudia Berek, Berlin Anne-Marie Schmitt-Verhulst, Marseille Basel · Freiburg · Paris · London · New York · New Delhi · Bangkok · Singapore · Tokyo · Sydney Fungal Allergy and Pathogenicity Volume Editors Michael Breitenbach, Salzburg Reto Crameri, Davos Samuel B. Lehrer, New Orleans, La. 48 figures, 11 in color and 22 tables, 2002 Basel · Freiburg · Paris · London · New York · New Delhi · Bangkok · Singapore · Tokyo · Sydney Chemical Immunology Formerly published as ‘Progress in Allergy’ (Founded 1939) Edited by Paul Kallos 1939–1988, Byron H. Waksman 1962–2002 Michael Breitenbach Professor, Department of Genetics and General Biology, University of Salzburg, Salzburg Reto Crameri Professor, Swiss Institute of Allergy and Asthma Research (SIAF), Davos Samuel B. Lehrer Professor, Clinical Immunology and Allergy, Tulane University School of Medicine, New Orleans, LA Bibliographic Indices. This publication is listed in bibliographic services, including Current Contents® and Index Medicus. Drug Dosage. The authors and the publisher have exerted every effort to ensure that drug selection and dosage set forth in this text are in accord with current recommendations and practice at the time of publication. However, in view of ongoing research, changes in government regulations, and the constant flow of information relating to drug therapy and drug reactions, the reader is urged to check the package insert for each drug for any change in indications and dosage and for added warnings and precautions. This is particularly important when the recommended agent is a new and/or infrequently employed drug. All rights reserved. No part of this publication may be translated into other languages, reproduced or utilized in any form or by any means electronic or mechanical, including photocopying, recording, microcopy- ing, or by any information storage and retrieval system, without permission in writing from the publisher.