Mth Microscope Theory Learning Objectives the Student Will Follow Oral and Written Instructions and Manage Time in the Lab Efficiently
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Resolving Power
The 5 I’s of Culturing Microbes • Inoculation • Isolation • Incubation • Inspection • Identification 8/18/12 MDufilho 1 Table 4.1 Metric Units of Length 8/18/12 MDufilho 2 Microscopy • General Principles of Microscopy – Wavelength of radiation – Magnification – Resolution – Contrast 8/18/12 MDufilho 3 Figure 4.1 The electromagnetic spectrum 400 nm 700 nm Visible light X UV Infra- Micro- Radio waves and Gamma rays rays light red wave Television Increasing wavelength 10–12m 10–8m 10–4m 100m 103m Crest One wavelength Trough Increasing resolving power 8/18/12 MDufilho 4 Figure 4.2 Light refraction and image magnification by a convex glass lens-overview Light Air Glass Focal point Specimen Convex Inverted, lens reversed, and enlarged 8/18/12 MDufilho image 5 Principles of Light Microscopy • Magnification occurs in two phases – – The objective lens forms the magnified real image – The real image is projected to the ocular where it is magnified again to form the virtual image • Total magnification of the final image is a product of the separate magnifying powers of the two lenses power of objective x power of ocular = total magnification 8/18/12 MDufilho 6 8/18/12 MDufilho 7 Resolution Resolution defines the capacity to distinguish or separate two adjacent objects – resolving power – Function of wavelength of light that forms the image along with characteristics of objectives • Visible light wavelength is 400 nm–750 nm • Numerical aperture of lens ranges from 0.1 to 1.25 • Oil immersion lens requires the use of oil to prevent refractive loss -
Subwavelength Resolution Fourier Ptychography with Hemispherical Digital Condensers
Subwavelength resolution Fourier ptychography with hemispherical digital condensers AN PAN,1,2 YAN ZHANG,1,2 KAI WEN,1,3 MAOSEN LI,4 MEILING ZHOU,1,2 JUNWEI MIN,1 MING LEI,1 AND BAOLI YAO1,* 1State Key Laboratory of Transient Optics and Photonics, Xi’an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi’an 710119, China 2University of Chinese Academy of Sciences, Beijing 100049, China 3College of Physics and Information Technology, Shaanxi Normal University, Xi’an 710071, China 4Xidian University, Xi’an 710071, China *[email protected] Abstract: Fourier ptychography (FP) is a promising computational imaging technique that overcomes the physical space-bandwidth product (SBP) limit of a conventional microscope by applying angular diversity illuminations. However, to date, the effective imaging numerical aperture (NA) achievable with a commercial LED board is still limited to the range of 0.3−0.7 with a 4×/0.1NA objective due to the constraint of planar geometry with weak illumination brightness and attenuated signal-to-noise ratio (SNR). Thus the highest achievable half-pitch resolution is usually constrained between 500−1000 nm, which cannot fulfill some needs of high-resolution biomedical imaging applications. Although it is possible to improve the resolution by using a higher magnification objective with larger NA instead of enlarging the illumination NA, the SBP is suppressed to some extent, making the FP technique less appealing, since the reduction of field-of-view (FOV) is much larger than the improvement of resolution in this FP platform. Herein, in this paper, we initially present a subwavelength resolution Fourier ptychography (SRFP) platform with a hemispherical digital condenser to provide high-angle programmable plane-wave illuminations of 0.95NA, attaining a 4×/0.1NA objective with the final effective imaging performance of 1.05NA at a half-pitch resolution of 244 nm with a wavelength of 465 nm across a wide FOV of 14.60 mm2, corresponding to an SBP of 245 megapixels. -
Introduction to Light Microscopy
Introduction to light microscopy A CAMDU training course Claire Mitchell, Imaging specialist, L1.01, 08-10-2018 Contents 1.Introduction to light microscopy 2.Different types of microscope 3.Fluorescence techniques 4.Acquiring quantitative microscopy data 1. Introduction to light microscopy 1.1 Light and its properties 1.2 A simple microscope 1.3 The resolution limit 1.1 Light and its properties 1.1.1 What is light? An electromagnetic wave A massless particle AND γ commons.wikimedia.org/wiki/File:EM-Wave.gif www.particlezoo.net 1.1.2 Properties of waves Light waves are transverse waves – they oscillate orthogonally to the direction of propagation Important properties of light: wavelength, frequency, speed, amplitude, phase, polarisation upload.wikimedia.org 1.1.3 The electromagnetic spectrum 퐸푝ℎ표푡표푛 = ℎν 푐 = λν 퐸푝ℎ표푡표푛 = photon energy ℎ = Planck’s constant ν = frequency 푐 = speed of light λ = wavelength pion.cz/en/article/electromagnetic-spectrum 1.1.4 Refraction Light bends when it encounters a change in refractive index e.g. air to glass www.thetastesf.com files.askiitians.com hyperphysics.phy-astr.gsu.edu/hbase/Sound/imgsou/refr.gif 1.1.5 Diffraction Light waves spread out when they encounter an aperture. electron6.phys.utk.edu/light/1/Diffraction.htm The smaller the aperture, the larger the spread of light. 1.1.6 Interference When waves overlap, they add together in a process called interference. peak + peak = 2 x peak constructive trough + trough = 2 x trough peak + trough = 0 destructive www.acs.psu.edu/drussell/demos/superposition/superposition.html 1.2 A simple microscope 1.2.1 Using lenses for refraction 1 1 1 푣 = + 푚 = physicsclassroom.com 푓 푢 푣 푢 cdn.education.com/files/ Light bends as it encounters each air/glass interface of a lens. -
Practical Tips for Two-Photon Microscopy
Appendix 1 Practical Tips for Two-Photon Microscopy Mark B. Cannell, Angus McMorland, and Christian Soeller INTRODUCTION blue and green diode lasers. To provide an alignment beam to which the external laser can be aligned, light from this reference As is clear from a number of the chapters in this volume, 2-photon laser needs to be bounced back through the microscope optical microscopy offers many advantages, especially for living-cell train and out through the external coupling port: studies of thick specimens such as brain slices and embryos. CAUTION: Before you switch on the reference laser in this However, these advantages must be balanced against the fact that configuration make sure that all PMTs are protected and/or commercial multiphoton instrumentation is much more costly than turned off. the equipment used for confocal or widefield/deconvolution. Given Place a front-surface mirror on the stage of the microscope and these two facts, it is not surprising that, to an extent much greater focus onto the reflective surface using an air objective for conve- than is true of confocal, many researchers have decided to add a nience (at sharp focus, you should be able to see scratches or other femtosecond (fs) pulsed near-IR laser to a scanner and a micro- mirror defects through the eyepieces). The idea of this method is scope to make their own system (Soeller and Cannell, 1996; Tsai to cause the reference laser beam to bounce back through the et al., 2002; Potter, 2005). Even those who purchase a commercial optical train and emerge from the other laser port. -
The-Pathologists-Microscope.Pdf
The Pathologist’s Microscope The Pathologist’s Microscope Rudolf Virchow, the father of Pathology, had available to him wonderful microscopes during the 1850’s to 1880’s, but the one you have now is far better. Your microscope is the most highly perfected of all scientific instruments. These brief notes on alignment, the objective lens, the condenser, and the eyepieces are what you need to know to get the most out of your microscope and to feel comfortable using it. Figure 1 illustrates the important parts of a generic modern light microscope. Figure 1 - Parts of the Microscope UNC Pathology & Lab Med, MSL, July 2013 1 The Pathologist’s Microscope Alignment August Köhler, in 1870, invented the method for aligning the microscope’s optical system that is still used in all modern microscopes. To get the most from your microscope it should be Köhler aligned. Here is how: 1. Focus a specimen slide at 10X. 2. Open the field iris and the condenser iris. 3. Observe the specimen and close the field iris until its shadow appears on the specimen. 4. Use the condenser focus knob to bring the field iris into focus on the specimen. Try for as sharp an image of the iris as you can get. If you can’t focus the field iris, check the condenser for a flip-in lens and find the configuration that lets you see the field iris. You may also have to move the field iris into the field of view (step 5) if it is grossly misaligned. 5.Center the field iris with the condenser centering screws. -
To Take Into Consideration the Propriety Of
his was the subject for discussion amongst the seventeen microscopists who met at Edwin Quekett’s house No 50 Wellclose Square, in the Borough of Stepney, East London on 3rd September 1839. It was resolved that such a society be formed Tand a provisional committee be appointed to carry this resolution into effect. The appointed provisional committee of seven were to be responsible for the formation of our society, they held meetings at their homes and drew up a set of rules. They adopted the name ‘Microscopical Society of London’ and arranged a public meeting on the 20th December 1839 at the rooms of the Horticultural Society, 21 Regent Street. Where a Nathaniel Bagshaw Ward © National Portrait Gallery, London President, Treasurer and Secretary were elected, the provisional committee also selected the size of almost airtight containers. Together with George 3 x 1 inch as a standard for glass slides. Loddiges, he saw the potential benefit of protection from sea air damage allowing the transport of plants Each of the members of the provisional committee between continents. This Ward published in 1834 had their own background which we have briefly and eventually his cases enabled the introduction described on the following pages, as you will see of the tea plant to Assam from China and rubber they are a diverse range of professionals. plants to Malaysia from South America. His glass plant cases allowed the growth of orchids and ferns in the Victorian home and in 1842 he wrote a book on the subject. However glass was subject to a tax making cases expensive so Ward lobbied successfully for its repeal in 1845. -
The Scientific Legacy of Antoni Van Leeuwenhoek
196 Chapter 12 Chapter 12 The Scientific Legacy of Antoni Van Leeuwenhoek This final chapter discusses some of the developments in science on which Antoni van Leeuwenhoek left his mark from his death to the beginning of the 21st century. It will review the influence of his work and listen for the echoes of his name almost three hundred years after his death. Figure 12.1 Nineteenth-century microscope by George Adams with eyepiece, objective, various attachments and a mirror to illuminate the specimen © Koninklijke Brill NV, Leiden, 2016 | doi 10.1163/9789004304307_013 The Scientific Legacy of Antoni Van Leeuwenhoek 197 Microscopy Microscopes have become increasingly complex and more versatile, but much easier to use, since the time of Van Leeuwenhoek. Single-lens microscopes went out of use in the 18th century, when compound microscopes with at least two lenses ‒ an eyepiece and an objective ‒ became the norm. Many innovations came from England. Firstly, the illumination of speci- mens was improved. During Van Leeuwenhoek’s lifetime, John Marshall (1663–1725) had developed a simple illumination system using a mirror attached to the foot of the microscope. John Cuff (1708–1772) used an extra lens, a condenser, in 1744 to concentrate light on the specimen. In 1755, George Adams (1720–1773) developed a microscope with a rotating wheel holding objectives with different powers of magnification. Sliding holders in which a variety of specimens could be mounted at one time can be traced back to the rotating holders on the single-lensed microscopes used by Christiaan Huygens and J. De Pouilly (or Depovilly) in the 1670s, and were developed for use with compound microscopes. -
Simple and Open 4F Koehler Transmitted Illumination System for Low- Cost Microscopic Imaging and Teaching
Simple and open 4f Koehler transmitted illumination system for low- cost microscopic imaging and teaching Jorge Madrid-Wolff1, Manu Forero-Shelton2 1- Department of Biomedical Engineering, Universidad de los Andes, Bogota, Colombia 2- Department of Physics, Universidad de los Andes, Bogota, Colombia [email protected] ORCID: JMW: https://orcid.org/0000-0003-3945-538X MFS: https://orcid.org/0000-0002-7989-0311 Any potential competing interests: NO Funding information: 1) Department of Physics, Universidad de los Andes, Colombia, 2) Colciencias grant 712 “Convocatoria Para Proyectos De Investigación En Ciencias Básicas“ 3) Project termination grant from the Faculty of Sciences, Universidad de los Andes, Colombia. Author contributions: JMW Investigation, Visualization, Writing (Original Draft Preparation) MFS Conceptualization, Funding Acquisition, Methodology, Supervision, Writing(Original Draft Preparation) 1 Title Simple and open 4f Koehler transmitted illumination system for low-cost microscopic imaging and teaching Abstract Koehler transillumination is a powerful imaging method, yet commercial Koehler condensers are difficult to integrate into tabletop systems and make learning the concepts of Koehler illumination difficult. We propose a simple 4f Koehler illumination system that offers advantages with respect to building simplicity, cost and compatibility with tabletop systems, which can be integrated with open source Light Sheet Fluorescence Microscopes (LSFMs). With those applications in mind as well as teaching, we provide -
Extension of Solid Immersion Lens Technology to Super-Resolution Raman Microscopy
Nanospectroscopy 2014; 1: 1–11 Research Article Open Access Edwin Ostertag*, Anita Lorenz, Karsten Rebner, Rudolf W. Kessler, Alfred J. Meixner Extension of solid immersion lens technology to super-resolution Raman microscopy Abstract: Scanning Near-Field Optical Microscopy 1 The near-field accessed with solid (SNOM) has developed during recent decades into a valuable tool to optically image the surface topology of immersion lens technology materials with super-resolution. With aperture-based The main reason for using solid immersion lenses is SNOM systems, the resolution scales with the size of the their capability to enhance the spatial resolution. Solids aperture, but also limits the sensitivity of the detection have higher refractive indices than air. When used as the and thus the application for spectroscopic techniques immersion medium, light travels more slowly and the like Raman SNOM. In this paper we report the extension wavelength is shorter in the optically denser medium of solid immersion lens (SIL) technology to Raman SNOM. which results in an improvement in resolution. Mansfield The hemispherical SIL with a tip on the bottom acts as and Kino were the first to recommend the SIL for an apertureless dielectric nanoprobe for simultaneously increasing the spatial resolution of the optical microscope acquiring topographic and spectroscopic information. [1]. A SIL is a spherical lens (diameter 2r, refractive index The SIL is placed between the sample and the microscope n ) which is polished to a thickness of r (hemisphere objective of a confocal Raman microscope. The lateral SIL type) or (1+1/n )r (supersphere or Weierstrass type) [2,3]. -
160-Series-Manual.Pdf
National Optical & Scientific Instruments Inc. 6508 Tri-County Parkway Schertz, Texas 78154 Phone (210) 590-9010 Fax (210) 590-1104 INSTRUCTIONS FOR 160 SERIES COMPOUND BIOLOGICAL MICROSCOPES Copyright © 1/2/01 National Optical & Scientific Instrument Inc. Models 160 (monocular head), 161 (dual head), 162 (binocular head), 163 (trinocular head), all have the same stand and stand features…only the head portion differs…illustrated is Model 162. Knurled diopter ring Sliding interpupillary adjustment, grips located on both left and right Widefield 10x/18 side of diopter scale eyepiece Mark on side of eyepiece tube for indexing diopter reading Interpupillary scale Knurled head locking screw Viewing head of microscope Revolving nosepiece Arm of microscope stand Objective lenses Two knurled locking screws for Specimen holder securing specimen holder to stage (mechanical stage) Stage Abbe condenser locking screw Abbe condenser 1.25 N.A. Iris diaphragm lever Coarse focus knob Filter holder for 32mm filter Control knob for Fine focus knob Abbe condenser Recess for 45mm filter Illuminator condenser Knobs controlling X and Y movement of mechanical stage Light intensity Base control knob Detachable power supply cord Tension adjustment 100v-240v, 50H/60H input 12 volt DC knob Output ON/OFF switch DC Plug Socket 12 Volt DC Switching Power Supply 3 INTRODUCTION Thank you for your purchase of a National microscope. It is a well built, precision instrument carefully checked to assure that it reaches you in good condition. It is designed for ease of operation and years of carefree use. The information in this manual probably far exceeds what you will need to know in order to operate and maintain your microscope. -
Oil Immersion Condensers Robert R
Oil Immersion Condensers Robert R. Pavlis One of the most important equations in optics is the law of refraction, often called Snell's law. sin θ1 v1 n2 = = sin θ2 v2 n1 The θ's are the angles from the normal to the light path. The v's are the velocities of light, and the n's are the indices of refraction. We can also write Snell's law thus: n2 sin θi = sin θr n1 Where θi is the angle of incidence, and where θr is the angle after refraction. When sin θi is equal to 1.0 we have the maximum angle of incidence, often called the critical angle. Thus n2 θc = arcsin n1 In microscopy numerical aperture, often abbreviated \na", is defined as na = n sin θ .(θ is the angular radius of the cone of light that is taken in by the lens. n is the index of refraction of the medium between the lens and the object.) The angular aperture is the angle across the cone of light taken in by an objective. It is commonly α denoted by α. This is twice the angular radius of the cone of light. Thus θ = 2 For water at 20C n is 1.3330, and for the glasses used for slides, those used for most \outer" microscope glass lens surfaces, and standard microscope immersion oils it is 1.515. Thus the critical angle from water to air is 48.607o. The critical angle from immersion oil or glass to air is 41.305o. The critical angle from immersion oil or glass to water is 61.626o. -
How to Perform DIC Microscopy Introduction Principle
How To Perform DIC Microscopy Technical Support Note #T-3 Date Created: 12/5/03 Category:Techniques Date Modified: 00/00/00 Keywords: DIC, Differential Interference Contrast, Axiovert 200M Introduction Many biological specimens cannot be effectively visualized using ordinary bright-field microscopy because their images produce very little contrast, rendering them essentially invisible. Differential Interference Contrast (DIC) microscopy is an excellent method for generating contrast by converting specimen optical path gradients into amplitude differences that can be visualized by the human eye. Images produced using DIC optics have a distinct relief-like, shadow-cast appearance giving an illusion of three dimensionality. This tutorial will cover the optical components used in DIC microscopy, the basic principles governing how it works, and the proper alignment of DIC optical components for the Zeiss Axiovert 200M research microscope. Principle DIC microscopy utilizes a system of dual-beam interference optics that transforms local gradients in optical path length in a specimen into regions of contrast in an image. Optical path length is a product of the refractive index and thickness between two points on an optical path and is directly related to the transit time and number of cycles of vibration exhibited by a wave of light traveling between two points. The basic principle of DIC is illustrated in figure 4. Waves of plane polarized light are split into two beams by the condenser prism. These pairs of beams emerge from the condenser lens traveling in parallel to one another and pass through the specimen. The spacing between these paired beams of light varies depending on the prism used, but generally ranges between 0.2-2µm.