Part 2 – Coral Reef Ecology
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A Quick Guide to Southeast Florida's Coral Reefs
A Quick Guide to Southeast Florida’s Coral Reefs DAVID GILLIAM NATIONAL CORAL REEF INSTITUTE NOVA SOUTHEASTERN UNIVERSITY Spring 2013 Prepared by the Land-based Sources of Pollution Technical Advisory Committee (TAC) of the Southeast Florida Coral Reef Initiative (SEFCRI) BRIAN WALKER NATIONAL CORAL REEF INSTITUTE, NOVA SOUTHEASTERN Southeast Florida’s coral-rich communities are more valuable than UNIVERSITY the Spanish treasures that sank nearby. Like the lost treasures, these amazing reefs lie just a few hundred yards off the shores of Martin, Palm Beach, Broward and Miami-Dade Counties where more than one-third of Florida’s 19 million residents live. Fishing, diving, and boating help attract millions of visitors to southeast Florida each year (30 million in 2008/2009). Reef-related expen- ditures generate $5.7 billion annually in income and sales, and support more than 61,000 local jobs. Such immense recreational activity, coupled with the pressures of coastal development, inland agriculture, and robust cruise and commercial shipping industries, threaten the very survival of our reefs. With your help, reefs will be protected from local stresses and future generations will be able to enjoy their beauty and economic benefits. Coral reefs are highly diverse and productive, yet surprisingly fragile, ecosystems. They are built by living creatures that require clean, clear seawater to settle, mature and reproduce. Reefs provide safe havens for spectacular forms of marine life. Unfortunately, reefs are vulnerable to impacts on scales ranging from local and regional to global. Global threats to reefs have increased along with expanding ART SEITZ human populations and industrialization. Now, warming seawater temperatures and changing ocean chemistry from carbon dioxide emitted by the burning of fossil fuels and deforestation are also starting to imperil corals. -
High CO2 Reduces the Settlement of a Spawning Coral on Three Common Species of Crustose Coralline Algae
Vol. 475: 93–99, 2013 MARINE ECOLOGY PROGRESS SERIES Published February 14 doi: 10.3354/meps10096 Mar Ecol Prog Ser High CO2 reduces the settlement of a spawning coral on three common species of crustose coralline algae Christopher Doropoulos1,2,*, Guillermo Diaz-Pulido2,3 1School of Biological Sciences, The University of Queensland, St Lucia, Queensland 4072, Australia 2Australian Research Council Centre of Excellence for Coral Reef Studies, Queensland 4072, Australia 3School of Environment and Australian Rivers Institute, Griffith University, Nathan, Queensland 4111, Australia ABSTRACT: Concern about the impacts of ocean acidification (OA) on ecosystem function has prompted many studies to focus on larval recruitment, demonstrating declines in settlement and early growth at elevated CO2 concentrations. Since larval settlement is often driven by particular cues governed by crustose coralline algae (CCA), it is important to determine whether OA reduces larval recruitment with specific CCA and the generality of any effects. We tested the effect of elevated CO2 on the survival and settlement of larvae from the common spawning coral Acropora selago with 3 ecologically important species of CCA, Porolithon onkodes, Sporolithon sp., and Titanoderma sp. After 3 d in no-choice laboratory assays at 447, 705, and 1214 µatm pCO2, the rates of coral settlement declined as pCO2 increased with all CCA taxa. The magnitude of the effect was highest with Titanoderma sp., decreasing by 87% from the ambient to highest CO2 treatment. In general, there were high rates of larval mortality, which were greater with the P. onkodes and Sporolithon sp. treatments (~80%) compared to the Titanoderma sp. treatment (65%). -
Diversity and Community Structure of Pelagic Cnidarians in the Celebes and Sulu Seas, Southeast Asian Tropical Marginal Seas
Deep-Sea Research I 100 (2015) 54–63 Contents lists available at ScienceDirect Deep-Sea Research I journal homepage: www.elsevier.com/locate/dsri Diversity and community structure of pelagic cnidarians in the Celebes and Sulu Seas, southeast Asian tropical marginal seas Mary M. Grossmann a,n, Jun Nishikawa b, Dhugal J. Lindsay c a Okinawa Institute of Science and Technology Graduate University (OIST), Tancha 1919-1, Onna-son, Okinawa 904-0495, Japan b Tokai University, 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan c Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka 237-0061, Japan article info abstract Article history: The Sulu Sea is a semi-isolated, marginal basin surrounded by high sills that greatly reduce water inflow Received 13 September 2014 at mesopelagic depths. For this reason, the entire water column below 400 m is stable and homogeneous Received in revised form with respect to salinity (ca. 34.00) and temperature (ca. 10 1C). The neighbouring Celebes Sea is more 19 January 2015 open, and highly influenced by Pacific waters at comparable depths. The abundance, diversity, and Accepted 1 February 2015 community structure of pelagic cnidarians was investigated in both seas in February 2000. Cnidarian Available online 19 February 2015 abundance was similar in both sampling locations, but species diversity was lower in the Sulu Sea, Keywords: especially at mesopelagic depths. At the surface, the cnidarian community was similar in both Tropical marginal seas, but, at depth, community structure was dependent first on sampling location Marginal sea and then on depth within each Sea. Cnidarians showed different patterns of dominance at the two Sill sampling locations, with Sulu Sea communities often dominated by species that are rare elsewhere in Pelagic cnidarians fi Community structure the Indo-Paci c. -
Decapod Crustacean Grooming: Functional Morphology, Adaptive Value, and Phylogenetic Significance
Decapod crustacean grooming: Functional morphology, adaptive value, and phylogenetic significance N RAYMOND T.BAUER Center for Crustacean Research, University of Southwestern Louisiana, USA ABSTRACT Grooming behavior is well developed in many decapod crustaceans. Antennular grooming by the third maxillipedes is found throughout the Decapoda. Gill cleaning mechanisms are qaite variable: chelipede brushes, setiferous epipods, epipod-setobranch systems. However, microstructure of gill cleaning setae, which are equipped with digitate scale setules, is quite conservative. General body grooming, performed by serrate setal brushes on chelipedes and/or posterior pereiopods, is best developed in decapods at a natant grade of body morphology. Brachyuran crabs exhibit less body grooming and virtually no specialized body grooming structures. It is hypothesized that the fouling pressures for body grooming are more severe in natant than in replant decapods. Epizoic fouling, particularly microbial fouling, and sediment fouling have been shown r I m ans of amputation experiments to produce severe effects on olfactory hairs, gills, and i.icubated embryos within short lime periods. Grooming has been strongly suggested as an important factor in the coevolution of a rhizocephalan parasite and its anomuran host. The behavioral organization of grooming is poorly studied; the nature of stimuli promoting grooming is not understood. Grooming characters may contribute to an understanding of certain aspects of decapod phylogeny. The occurrence of specialized antennal grooming brushes in the Stenopodidea, Caridea, and Dendrobranchiata is probably not due to convergence; alternative hypotheses are proposed to explain the distribution of this grooming character. Gill cleaning and general body grooming characters support a thalassinidean origin of the Anomura; the hypothesis of brachyuran monophyly is supported by the conservative and unique gill-cleaning method of the group. -
Supplementary Material
Supplementary Material SM1. Post-Processing of Images for Automated Classification Imagery was collected without artificial light and using a fisheye lens to maximise light capture, therefore each image needed to be processed prior annotation in order to balance colour and to minimise the non-linear distortion introduced by the fisheye lens (Figure S1). Initially, colour balance and lenses distortion correction were manually applied on the raw images using Photoshop (Adobe Systems, California, USA). However, in order to optimize the manual post-processing time of thousands of images, more recent images from the Indian Ocean and Pacific Ocean were post- processed using compressed images (jpeg format) and an automatic batch processing in Photoshop and ImageMagick, the latter an open-source software for image processing (www.imagemagick.org). In view of this, the performance of the automated image annotation on images without colour balance was contrasted against images colour balanced using manual post-processing (on raw images) and the automatic batch processing (on jpeg images). For this evaluation, the error metric described in the main text (Materials and Methods) was applied to the images from following regions: the Maldives and the Great Barrier Reef (Figures S2 and S3). We found that the colour balance applied regardless the type of processing (manual vs automatic) had an important beneficial effect on the performance of the automated image annotation as errors were reduced for critical labels in both regions (e.g., Algae labels; Figures S2 and S3). Importantly, no major differences in the performance of the automated annotations were observed between manual and automated adjustments for colour balance. -
Caribbean Wildlife Undersea 2017
Caribbean Wildlife Undersea life This document is a compilation of wildlife pictures from The Caribbean, taken from holidays and cruise visits. Species identification can be frustratingly difficult and our conclusions must be checked via whatever other resources are available. We hope this publication may help others having similar problems. While every effort has been taken to ensure the accuracy of the information in this document, the authors cannot be held re- sponsible for any errors. Copyright © John and Diana Manning, 2017 1 Angelfishes (Pomacanthidae) Corals (Cnidaria, Anthozoa) French angelfish 7 Bipinnate sea plume 19 (Pomacanthus pardu) (Antillogorgia bipinnata) Grey angelfish 8 Black sea rod 20 (Pomacanthus arcuatus) (Plexaura homomalla) Queen angelfish 8 Blade fire coral 20 (Holacanthus ciliaris) (Millepora complanata) Rock beauty 9 Branching fire coral 21 (Holacanthus tricolor) (Millepora alcicornis) Townsend angelfish 9 Bristle Coral 21 (Hybrid) (Galaxea fascicularis) Elkhorn coral 22 Barracudas (Sphyraenidae) (Acropora palmata) Great barracuda 10 Finger coral 22 (Sphyraena barracuda) (Porites porites) Fire coral 23 Basslets (Grammatidae) (Millepora dichotoma) Fairy basslet 10 Great star coral 23 (Gramma loreto) (Montastraea cavernosa) Grooved brain coral 24 Bonnetmouths (Inermiidae) (Diploria labyrinthiformis) Boga( Inermia Vittata) 11 Massive starlet coral 24 (Siderastrea siderea) Bigeyes (Priacanthidae) Pillar coral 25 Glasseye snapper 11 (Dendrogyra cylindrus) (Heteropriacanthus cruentatus) Porous sea rod 25 (Pseudoplexaura -
Zooxanthellae Expelled from Bleached Corals at 33°C Are
MARINE ECOLOGY PROGRESS SERIES Vol. 220: 163–168, 2001 Published September 27 Mar Ecol Prog Ser Zooxanthellae expelled from bleached corals at 33؇C are photosynthetically competent Peter J. Ralph1,*, Rolf Gademann2, Anthony W. D. Larkum3 1Department of Environmental Sciences, University of Technology, PO Box 123 Broadway, Sydney, New South Wales 2065, Australia 2Gademann Messtechnik, Würzburg, Germany 3School of Biological Sciences (A08), University of Sydney, New South Wales 2006, Australia ABSTRACT: While a number of factors have been linked to coral bleaching, such as high light, high temperature, low salinity, and UV exposure, the best explanation for recent coral bleaching events are small temperature excursions of 1 to 2°C above summer sea-surface temperatures in the tropics which induce the dinoflagellate symbionts (zooxanthellae) to be expelled from the host. The mecha- nism that triggers this expulsion of the algal symbionts is not resolved, but has been attributed to damage to the photosynthetic mechanism of the zooxanthellae. In the present investigation we addressed the question of whether such expelled zooxanthellae are indeed impaired irreversibly in their photosynthesis. We employed a Microscopy Pulse Amplitude-Modulated (PAM) fluorometer, by which individual zooxanthellae can be examined to study photosynthesis in zooxanthellae expelled when corals are subjected to a temperature of 33°C. We show that the expelled zooxanthellae from Cyphastrea serailia were largely unaffected in their photosynthesis and could be heated to 37°C before showing temperature-induced photosynthetic impairment. These results suggest strongly that the early events that trigger temperature-induced expulsion of zooxanthellae involve a dysfunction in the interaction of the zooxanthellae and the coral host tissue, and not a dysfunction in the zooxan- thellae per se. -
THE CASE AGAINST Marine Mammals in Captivity Authors: Naomi A
s l a m m a y t T i M S N v I i A e G t A n i p E S r a A C a C E H n T M i THE CASE AGAINST Marine Mammals in Captivity The Humane Society of the United State s/ World Society for the Protection of Animals 2009 1 1 1 2 0 A M , n o t s o g B r o . 1 a 0 s 2 u - e a t i p s u S w , t e e r t S h t u o S 9 8 THE CASE AGAINST Marine Mammals in Captivity Authors: Naomi A. Rose, E.C.M. Parsons, and Richard Farinato, 4th edition Editors: Naomi A. Rose and Debra Firmani, 4th edition ©2009 The Humane Society of the United States and the World Society for the Protection of Animals. All rights reserved. ©2008 The HSUS. All rights reserved. Printed on recycled paper, acid free and elemental chlorine free, with soy-based ink. Cover: ©iStockphoto.com/Ying Ying Wong Overview n the debate over marine mammals in captivity, the of the natural environment. The truth is that marine mammals have evolved physically and behaviorally to survive these rigors. public display industry maintains that marine mammal For example, nearly every kind of marine mammal, from sea lion Iexhibits serve a valuable conservation function, people to dolphin, travels large distances daily in a search for food. In learn important information from seeing live animals, and captivity, natural feeding and foraging patterns are completely lost. -
The Polyp and the Medusa Life on the Move
The Polyp and the Medusa Life on the Move Millions of years ago, unlikely pioneers sparked a revolution. Cnidarians set animal life in motion. So much of what we take for granted today began with Cnidarians. FROM SHAPE OF LIFE The Polyp and the Medusa Life on the Move Take a moment to follow these instructions: Raise your right hand in front of your eyes. Make a fist. Make the peace sign with your first and second fingers. Make a fist again. Open your hand. Read the next paragraph. What you just did was exhibit a trait we associate with all animals, a trait called, quite simply, movement. And not only did you just move your hand, but you moved it after passing the idea of movement through your brain and nerve cells to command the muscles in your hand to obey. To do this, your body needs muscles to move and nerves to transmit and coordinate movement, whether voluntary or involuntary. The bit of business involved in making fists and peace signs is pretty complex behavior, but it pales by comparison with the suites of thought and movement associated with throwing a curve ball, walking, swimming, dancing, breathing, landing an airplane, running down prey, or fleeing a predator. But whether by thought or instinct, you and all animals except sponges have the ability to move and to carry out complex sequences of movement called behavior. In fact, movement is such a basic part of being an animal that we tend to define animalness as having the ability to move and behave. -
Zooxanthellae) ROB ROWAN* and DENNIS A
Proc. Natl. Acad. Sci. USA Vol. 89, pp. 3639-3643, April 1992 Plant Biology Ribosomal RNA sequences and the diversity of symbiotic dinoflagellates (zooxanthellae) ROB ROWAN* AND DENNIS A. POWERS Department of Biological Sciences, Stanford University, Hopkins Marine Station, Pacific Grove, CA 93950-3094 Communicated by Winslow R. Briggs, December 23, 1991 ABSTRACT Zooxanthellae are unicellular algae that oc- systematics can be obviated by applying molecular methods. cur as endosymbionts in many hundreds of common marine DNA sequences are excellent phylogenetic data (for reviews, invertebrates. The issue of zooxanthella diversity has been see refs. 15 and 16) that are especially useful for identifying difficult to address. Most zooxanthellae have been placed in the and classifying morphologically depauperate organisms like dinoflagellate genus Symbiodinium as one or several species that zooxanthellae. Furthermore, Symbiodinium genes can be are not easily distinguished. We compared Symbiodinium and obtained from intact symbioses using the polymerase chain nonsymbiotic dinoflageliates using small ribosomal subunit reaction (PCR; ref. 17), removing the obstacle of culturing RNA sequences. Surprisingly, small ribosomal subunit RNA zooxanthellae for the purpose of taxonomy (18). diversity within the genus Symbiodinium is comparable to that Various DNA sequences evolve at very different rates; observed among different orders of nonsymbiotic dinoflagel- which sequences are informative for a group depends upon lates. These data reinforce the conclusion that Symbiodinium- how closely related its members are. Having no a priori like zooxanthellae represent a collection of distinct species and information for Symbiodinium, we examined nuclear genes provide a precedent for a molecular genetic taxonomy of the that encode small ribosomal subunit RNA (ssRNA; 16S-like genus Symbiodinium. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Cassiopea Xamachana (Upside-Down Jellyfish)
UWI The Online Guide to the Animals of Trinidad and Tobago Ecology Cassiopea xamachana (Upside-down Jellyfish) Order: Rhizostomeae (Eight-armed Jellyfish) Class: Scyphozoa (Jellyfish) Phylum: Cnidaria (Corals, Sea Anemones and Jellyfish) Fig. 1. Upside-down jellyfish, Cassiopea xamachana. [http://images.fineartamerica.com/images-medium-large/upside-down-jellyfish-cassiopea-sp-pete-oxford.jpg, downloaded 9 March 2016] TRAITS. Cassiopea xamachana, also known as the upside-down jellyfish, is quite large with a dominant medusa (adult jellyfish phase) about 30cm in diameter (Encyclopaedia of Life, 2014), resembling more of a sea anemone than a typical jellyfish. The name is associated with the fact that the umbrella (bell-shaped part) settles on the bottom of the sea floor while its frilly tentacles face upwards (Fig. 1). The saucer-shaped umbrella is relatively flat with a well-defined central depression on the upper surface (exumbrella), the side opposite the tentacles (Berryman, 2016). This depression gives the jellyfish the ability to stick to the bottom of the sea floor while it pulsates gently, via a suction action. There are eight oral arms (tentacles) around the mouth, branched elaborately in four pairs. The most commonly seen colour is a greenish grey-blue, due to the presence of zooxanthellae (algae) embedded in the mesoglea (jelly) of the body, and especially the arms. The mobile medusa stage is dioecious, which means that there are separate males and females, although there are no features which distinguish the sexes. The polyp stage is sessile (fixed to the substrate) and small (Sterrer, 1986). UWI The Online Guide to the Animals of Trinidad and Tobago Ecology DISTRIBUTION.