Diagnostic Flowchart for Childhood Onset Chorea
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CCR PEDIATRIC ONCOLOGY SERIES CCR Pediatric Oncology Series Recommendations for Childhood Cancer Screening and Surveillance in DNA Repair Disorders Michael F. Walsh1, Vivian Y. Chang2, Wendy K. Kohlmann3, Hamish S. Scott4, Christopher Cunniff5, Franck Bourdeaut6, Jan J. Molenaar7, Christopher C. Porter8, John T. Sandlund9, Sharon E. Plon10, Lisa L. Wang10, and Sharon A. Savage11 Abstract DNA repair syndromes are heterogeneous disorders caused by around the world to discuss and develop cancer surveillance pathogenic variants in genes encoding proteins key in DNA guidelines for children with cancer-prone disorders. Herein, replication and/or the cellular response to DNA damage. The we focus on the more common of the rare DNA repair dis- majority of these syndromes are inherited in an autosomal- orders: ataxia telangiectasia, Bloom syndrome, Fanconi ane- recessive manner, but autosomal-dominant and X-linked reces- mia, dyskeratosis congenita, Nijmegen breakage syndrome, sive disorders also exist. The clinical features of patients with DNA Rothmund–Thomson syndrome, and Xeroderma pigmento- repair syndromes are highly varied and dependent on the under- sum. Dedicated syndrome registries and a combination of lying genetic cause. Notably, all patients have elevated risks of basic science and clinical research have led to important in- syndrome-associated cancers, and many of these cancers present sights into the underlying biology of these disorders. Given the in childhood. Although it is clear that the risk of cancer is rarity of these disorders, it is recommended that centralized increased, there are limited data defining the true incidence of centers of excellence be involved directly or through consulta- cancer and almost no evidence-based approaches to cancer tion in caring for patients with heritable DNA repair syn- surveillance in patients with DNA repair disorders. -
Clinical Significance of ERCC2, XPC, ERCC5 and XRCC3 Gene Polymorphisms in Diffuse Large B Cell Lymphoma
DOI: 10.14744/ejmi.2020.56831 EJMI 2020;4(3):332–340 Research Article Clinical Significance of ERCC2, XPC, ERCC5 and XRCC3 Gene Polymorphisms in Diffuse Large B Cell Lymphoma Aykut Bahceci,1 Semra Paydas,2 Melek Ergin,3 Gulsah Seydaoglu,4 Gulsum Ucar5 1Department of Medical Oncology, Dr. Ersin Arslan Training and Research Hospital, Gaziantep, Turkey 2Department of Medical Oncology, Cukurova University Faculty of Medicine, Adana, Turkey 3Department of Patology, Cukurova University Faculty of Medicine, Adana, Turkey 4Department of Biostatistics, Cukurova University Faculty of Medicine, Adana, Turkey 5Department of Pediatric Hematology, Cukurova University Faculty of Medicine, Adana, Turkey Abstract Objectives: DNA repair genes protects the genome from DNA damage both of endogenous and exogenous stress fac- tors. Due to DNA repair gene polymorphisms, there are differences in the repair capacity between several cancer types. The aim of this study is to evaluate the association between some of the DNA repair gene polymorphisms and clinical outcome in Diffuse Large B-Cell Lymphoma (DLBCL). Methods: The association between clinical factors including stage at diagnosis, extra-nodal involvement, tumor bur- den, bone marrow involvement, relapse status, disease-free/overall survival times and DNA repair gene polymorphisms including ERCC2 (Lys751Gln), XPC (Gln939Lys), ERCC5 (Asp1104His) and XRCC3 (Thr241Met) in 58 patients with DLBCL. T-Shift Real-Time PCR was used to detect these mutations. Results: The median survival times were 60 months and 109 months in patients with CC genotype and CA/AA geno- type of XPC gene polymorphism, respectively (p=0.017). More interestingly, median survival times were 9 months and 109 months in patients with CC (XPC)/CC (XRCC3) and CA/AA (XPC)/CT/TT (XRCC3) for both XPC and XRCC3 gene polymorphisms, respectively (p=0.004). -
Acetylation of BLM Protein Regulates Its Function in Response to DNA Damage Cite This: RSC Adv.,2017,7,55301 Yankun Wang and Jianyuan Luo *
RSC Advances View Article Online PAPER View Journal | View Issue Acetylation of BLM protein regulates its function in response to DNA damage Cite this: RSC Adv.,2017,7,55301 Yankun Wang and Jianyuan Luo * Bloom syndrome is an autosomal recessive disease with phenotypes of cancer predisposition and premature aging caused by mutations of the blm gene. BLM belongs to the RecQ DNA helicase family and functions in maintaining genomic stability. In this study, we found that several lysine residues of BLM were acetylated in cells. The dynamic acetylation levels of BLM were regulated by CBP/p300 and SIRT1. Received 15th June 2017 We further identified that five lysines, K476, K863, K1010, K1329, and K1411, are the major acetylation Accepted 29th November 2017 sites. Treating cells with different DNA damage agents found that acetylation of BLM was different in DOI: 10.1039/c7ra06666j response to etoposide and hydroxyurea, suggesting that BLM acetylation may have multiple functions in rsc.li/rsc-advances DNA repair. Creative Commons Attribution-NonCommercial 3.0 Unported Licence. Introduction recombination and makes DNA back to integrated condition.14 On the other hand, BLM interacts with 53BP1 and completes Bloom syndrome protein (BLM), coded by the blm gene, is the repair in the NHEJ pathway.11 It has been found that BLM is a 1417 amino acid protein. Mutations or deletions of the blm sensitive to multiple stress factors, including hydroxyurea (HU), gene lead to Bloom Syndrome (BS).1 It is an inherited etoposide and ionizing radiation (IR) which all -
XPA-Deficiency in Hairless Mice Causes a Shift in Skin Tumor Types
Oncogene (1998) 16, 2205 ± 2212 1998 Stockton Press All rights reserved 0950 ± 9232/98 $12.00 http://www.stockton-press.co.uk/onc XPA-de®ciency in hairless mice causes a shift in skin tumor types and mutational target genes after exposure to low doses of U.V.B. Annemieke de Vries1,3,5, Rob JW Berg2, Susan Wijnhoven3, Anja Westerman3, Piet W Wester4, Coen F van Kreijl3, Peter JA Capel1, Frank R de Gruijl2, Henk J van Kranen3 and Harry van Steeg3 Departments of 1Immunology, 2Dermatology, University of Utrecht, Heidelberglaan 100, 3584 CX Utrecht; 3National Institute of Public Health and the Environment, Laboratory of Health Eects Research, Department of Carcinogenesis, Mutagenesis and Genetics; 4Laboratory of Pathology and Immunobiology, PO Box 1, 3720 BA Bilthoven, The Netherlands Xeroderma pigmentosum (XP) patients with a defect in arrest, DNA repair, apoptosis and immunological the nucleotide excision repair gene XPA, develop tumors responses (Mukhtar and Elmets, 1996; Kraemer, with a high frequency on sun-exposed areas of the skin. 1997). The central role of DNA damage in skin Here we describe that hairless XPA-de®cient mice also carcinogenesis and the importance of an ecient develop skin tumors with a short latency time and a DNA repair mechanism to eliminate the U.V.-induced 100% prevalence after daily exposure to low doses of DNA damage, is best illustrated by the human U.V.B. Surprisingly and in contrast to U.V.B.-exposed heritable disease xeroderma pigmentosum (XP) repair pro®cient hairless mice who mainly develop (Cleaver and Kraemer, 1995). Seven complementation squamous cell carcinomas, the XPA-de®cient mice groups exist in XP (XP-A to XP-G), each caused by a developed papillomas with a high frequency (31%) at a defect in a dierent gene involved in nucleotide U.V. -
Potentially Functional Single Nucleotide Polymorphisms in the Core Nucleotide Excision Repair Genes and Risk of Squamous Cell Carcinoma of the Head and Neck
1633 Potentially Functional Single Nucleotide Polymorphisms in the Core Nucleotide Excision Repair Genes and Risk of Squamous Cell Carcinoma of the Head and Neck Jiaze An,1 Zhensheng Liu,1 Zhibin Hu,1 Guojun Li,1 Li-E Wang,1 Erich M. Sturgis,1,2 AdelK. El-Naggar, 2,3 Margaret R. Spitz,1 and Qingyi Wei1 Departments of 1Epidemiology, 2Head and Neck Surgery, and 3Pathology, The University of Texas M. D. Anderson Cancer Center, Houston, Texas Abstract Susceptibility to cancer has been associated with DNA SCCHN risk (adjusted odds ratio, 1.65; 95% confidence repair capacity, a global reflection of all functional variants, interval, 1.16-2.36). In analysis of the joint effects, the most of which are relatively rare. Among the 1,098 single number of observed risk genotypes was associated with nucleotide polymorphisms (SNP) identified in the eight SCCHN risk in a dose-response manner (P for trend = 0.017) core nucleotide excision repair genes, only a few are and those who carried four or more risk genotypes exhibited common nonsynonymous or regulatory SNPs that are a borderline significant 1.23-fold increased SCCHN risk potentially functional. We tested the hypothesis that seven (adjusted odds ratio, 1.23; 95% confidence interval, 0.99-1.53). selected common nonsynonymous and regulatory variants In the stratified analysis, the dichotomized combined effect in the nucleotide excision repair core genes are associated of the seven SNPs was slightly more evident among older with risk of squamous cell carcinoma of the head and neck subjects, women, and laryngeal cancer. These findings (SCCHN) in a hospital-based, case-control study of 829 suggest that these potentially functional SNPs may collec- SCCHN cases and 854 cancer-free controls. -
Use of Big Data to Estimate Prevalence of Defective DNA Repair Variants in the US Population
Supplementary Online Content Pugh J, Khan SG, Tamura D, et al. Use of big data to estimate prevalence of defective DNA repair variants in the US population. JAMA Dermatol. Published online December 5, 2018. doi:10.1001/jamadermatol.2018.4473 eTable 1. 156 XP Disease Associated Missense or Nonsense Mutations in XPA‐G genes from HGMD database and NIH cohort eTable 2. 65 XP Mutations Listed in gnomAD Database This supplementary material has been provided by the authors to give readers additional information about their work. © 2018 American Medical Association. All rights reserved. Downloaded From: https://jamanetwork.com/ on 09/30/2021 eTable 1. 156 XP Disease Associated Missense or Nonsense Mutations in XPA‐G genes from HGMD database and NIH cohort Mutation Frequency Amino Listed in Complemen‐ Acid Clinical GnomAD tation Group Gene Number Phenotype* Database? rs Number** Protein Change cDNA A XPA 85 XP NO n/a*** p.Q85X c. 253C>T A XPA 94 XP NO n/a p.P94L c.281C>T A XPA 95 XP NO n/a p. G95R c.283G>A A XPA 105 XP NO n/a p.C105Y c. 314G>A A XPA 108 XP YES 104894131 p.C108F c.323G>T A XPA 111 XP YES 769255883 p.E111X c.331G>T A XPA 116 XP NO 104894134 p.Y116X c.348T>A A XPA 126 XP NO n/a p.C126W c.378T>G A XPA 126 XP NO n/a p.C126Y c.377G>A A XPA 151 XP NO n/a p.K151X c.451A>T A XPA 185 XP NO n/a p.Q185X c.553C>T A XPA 207 XP YES 104894133 p.R207X c.619C>T A XPA 208 XP NO n/a p.Q208X c.622C>T A XPA 211 XP YES 149226993 p.R211X c.631C>T A XPA 228 XP YES 104894132 p.R228X c.682C>T A XPA 244 XP YES 104894132 p.H244R c.731A>G B XPB (ERCC3) 425 XP YES 121913047 p.R425X c.1273C>T B XPB (ERCC3) 545 XP/CS YES 121913048 p.Q545X c.1633C>T C XPC 1 XP NO 760324503 p.M1R c.2T>G C XPC 52 XP NO n/a p.S52X c.155C>G C XPC 149 XP NO n/a p.E149X c.445G>T C XPC 155 XP YES 755825264 p.R155X c.463C>T C XPC 183 XP NO n/a p.K183X c.547A>T C XPC 220 XP YES 745679643 p.R220X c.658C>T C XPC 247 XP YES 764321665 p.R247X c.739C>T C XPC 260 XP NO n/a p.W260X c.780G>A C XPC 284 XP NO n/a p.E284X c. -
Can Synthetic Lethality Approach Be Used with DNA Repair Genes for Primary and Secondary MDS?
Medical Oncology (2019) 36:99 https://doi.org/10.1007/s12032-019-1324-7 ORIGINAL PAPER Can synthetic lethality approach be used with DNA repair genes for primary and secondary MDS? Howard Lopes Ribeiro Junior1,2 · Roberta Taiane Germano de Oliveira1,2 · Daniela de Paula Borges1,2 · Marília Braga Costa1,2 · Izabelle Rocha Farias1,2 · Antônio Wesley Araújo dos Santos1,2 · Silvia Maria Meira Magalhães1,2 · Ronald Feitosa Pinheiro1,2,3 Received: 5 August 2019 / Accepted: 15 October 2019 / Published online: 30 October 2019 © Springer Science+Business Media, LLC, part of Springer Nature 2019 Abstract Cancer-specifc defects in DNA repair pathways create the opportunity to employ synthetic lethality approach. Recently, GEMA (gene expression and mutation analysis) approach detected insufcient expression of BRCA or NHEJ (non-homol- ogous end joining) to predict PARP inhibitors response. We evaluated a possible role of DNA repair pathways using gene expression of single-strand break (XPA, XPC, XPG/ERCC5, CSA/ERCC8, and CSB/ERCC6) and double-strand break (ATM, BRCA1, BRCA2, RAD51, XRCC5, XRCC6, LIG4) in 92 patients with myelodysplastic syndrome (73 de novo, 9 therapy- related (t-MDS). Therapy-related MDS (t-MDS) demonstrated a signifcant downregulation of axis BRCA1-BRCA2-RAD51 comparing to normal controls (p = 0.048, p = 0.001, p = 0.001). XRCC6 showed signifcantly low expression in de novo MDS comparing to controls (p = 0.039) and for patients who presented chromosomal abnormalities (p = 0.047). Downregula- tion of LIG4 was consistently associated with poor prognostic markers in de novo MDS (hemoglobin < 8 g/dL (p = 0.040), neutrophils < 800/mm3 (p < 0.001), patients with excess of blasts (p = 0.001), very high (p = 0.002)/high IPSS-R (p = 0.043) and AML transformation (p < 0.001). -
A Novel Regulation Mechanism of DNA Repair by Damage-Induced and RAD23-Dependent Stabilization of Xeroderma Pigmentosum Group C Protein
Downloaded from genesdev.cshlp.org on October 1, 2021 - Published by Cold Spring Harbor Laboratory Press A novel regulation mechanism of DNA repair by damage-induced and RAD23-dependent stabilization of xeroderma pigmentosum group C protein Jessica M.Y. Ng,1 Wim Vermeulen,1 Gijsbertus T.J. van der Horst,1 Steven Bergink,1 Kaoru Sugasawa,3,4 Harry Vrieling,2 and Jan H.J. Hoeijmakers1,5 1MGC-Department of Cell Biology & Genetics, Centre for Biomedical Genetics, Erasmus Medical Center, Rotterdam, The Netherlands; 2MGC-Department of Radiation Genetics and Chemical Mutagenesis, Leiden University Medical Center, 2333 AL Leiden, The Netherlands; 3Cellular Physiology Laboratory, RIKEN (The Institute of Physical and Chemical Research), and 4Core Research for Evolutional Science and Technology, Japan Science and Technology Corporation, Wako, Saitama 351-0198, Japan Primary DNA damage sensing in mammalian global genome nucleotide excision repair (GG-NER) is performed by the xeroderma pigmentosum group C (XPC)/HR23B protein complex. HR23B and HR23A are human homologs of the yeast ubiquitin-domain repair factor RAD23, the function of which is unknown. Knockout mice revealed that mHR23A and mHR23B have a fully redundant role in NER, and a partially redundant function in embryonic development. Inactivation of both genes causes embryonic lethality, but appeared still compatible with cellular viability. Analysis of mHR23A/B double-mutant cells showed that HR23 proteins function in NER by governing XPC stability via partial protection against proteasomal degradation. Interestingly, NER-type DNA damage further stabilizes XPC and thereby enhances repair. These findings resolve the primary function of RAD23 in repair and reveal a novel DNA-damage-dependent regulation mechanism of DNA repair in eukaryotes, which may be part of a more global damage-response circuitry. -
Studying Werner Syndrome to Elucidate Mechanisms and Therapeutics of Human Aging and Age-Related Diseases
Studying Werner syndrome to elucidate mechanisms and therapeutics of human aging and age-related diseases Sofie Lautrup1,6, Domenica Caponio1,2,6, Hoi-Hung Cheung3, Claudia Piccoli2,4, Tinna Stevnsner5, Wai-Yee Chan3, Evandro F. Fang1,* 1 Department of Clinical Molecular Biology, University of Oslo and Akershus University Hospital, 1478 Lørenskog, Norway 2 Department of Clinical and Experimental Medicine University of Foggia Medical School Via L.Pinto 171122 Foggia, Italy 3CUHK-CAS GIBH Joint Research Laboratory on Stem Cell and Regenerative Medicine, School of Biomedical Sciences, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, Hong Kong S.A.R., China 4 Laboratory of Pre-clinical and Translational Research, IRCCS-CROB, Referral Cancer Center of Basilicata, 85028 Rionero in Vulture, Italy 5 Danish Aging Research Center, Department of Molecular Biology and Genetics, University of Aarhus, 8000 Aarhus C, Denmark 6Co-first authors * Corresponding author: [email protected] or [email protected] Abstract Aging is a natural and unavoidable part of life. However, aging is also the primary driver of the dominant human diseases, such as cardiovascular disease, cancer, and neurodegenerative diseases, including Alzheimer’s disease. Unraveling the sophisticated molecular mechanisms of the human aging process may provide novel strategies to extend ‘healthy aging’ and the cure of human aging-related diseases. Werner syndrome (WS), is a heritable human premature aging disease caused by mutations in the gene encoding the Werner (WRN) DNA helicase. As a classical premature aging disease, etiological exploration of WS can shed light on the mechanisms of normal human aging and facilitate the development of interventional strategies to improve the healthspan. -
DNA Repair Disorders
178 Arch Dis Child 1998;78:178–184 REGULAR REVIEW Arch Dis Child: first published as 10.1136/adc.78.2.178 on 1 February 1998. Downloaded from DNA repair disorders C GeoVrey Woods Over the past 30 years a number of rare DNA Exogenous DNA mutants have been classi- repair disorder phenotypes have been deline- cally divided into ultraviolet irradiation, ionis- ated, for example Bloom’s syndrome, ataxia ing irradiation, and alkylating agents. telangiectasia, and Fanconi’s anaemia. In each Ultraviolet irradiation and alkylating agents phenotype it was hypothesised that the under- can cause a number of specific base changes, as lying defect was an inability to repair a particu- well as cross linking bases together. Ionising lar type of DNA damage. For some of these irradiation is thought to generate the majority disorders this hypothesis was supported by of its mutational load by free radical produc- cytogenetics studies using DNA damaging tion. A wide variety of other DNA damaging agents, these tests defined the so-called chro- agents, both natural and man made, are mosome breakage syndromes. A number of the known, many are used as chemotherapeutic aetiological genes have recently been cloned, agents. confirming that some DNA repair disorder phenotypes can be caused by more than one DNA repair gene and vice versa. This review deals only with The DNA double helix seems to have evolved the more common DNA repair disorders. so that mutations, even as small as individual Rarer entities, such as Rothmund-Thomson base damage, are easily recognised. Such syndrome and dyskeratosis congenita, are recognition is usually by a change to the physi- excluded. -
Conceptual Developments in the Causes of Cockayne Syndrome
Mechanisms of Ageing and Development 134 (2013) 284–290 Contents lists available at SciVerse ScienceDirect Mechanisms of Ageing and Development jo urnal homepage: www.elsevier.com/locate/mechagedev Conceptual developments in the causes of Cockayne syndrome a, b a c,1 James E. Cleaver *, Vladimir Bezrookove , Ingrid Revet , Eric J. Huang a Department of Dermatology, University of California San Francisco, 2340 Sutter Street, San Francisco, CA 94143, United States b Center for Melanoma Research & Treatment, California Pacific Medical Center & Research Institute, San Francisco, CA, United States c Department of Pathology, University of California San Francisco, San Francisco, CA 94143, United States A R T I C L E I N F O A B S T R A C T Article history: Cockayne syndrome is an autosomal recessive disease that covers a wide range of symptoms, from mild Available online 18 February 2013 photosensitivity to severe neonatal lethal disorder. The pathology of Cockayne syndrome may be caused by several mechanisms such as a DNA repair deficiency, transcription dysregulation, altered redox Keywords: balance and mitochondrial dysfunction. Conceivably each of these mechanisms participates during a Ultraviolet light different stage in life of a Cockayne syndrome patient. Endogenous reactive oxygen is considered as an Reactive oxygen ultimate cause of DNA damage that contributes to Cockayne syndrome pathology. Here we demonstrate Mitochondria that mitochondrial reactive oxygen does not cause detectable nuclear DNA damage. This observation Transcription coupled repair implies that a significant component of Cockayne syndrome pathology may be due to abnormal Neurodegeneration mitochondrial function independent of nuclear DNA damage. The source of nuclear DNA damage to central nervous system tissue most likely occurs from extrinsic neurotransmitter signaling. -
Molecular Analysis of Mutations in the CSB (ERCC6) Gene in Patients with Cockayne Syndrome Donna L
CORE Metadata, citation and similar papers at core.ac.uk Provided by Elsevier - Publisher Connector Am. J. Hum. Genet. 62:77–85, 1998 Molecular Analysis of Mutations in the CSB (ERCC6) Gene in Patients with Cockayne Syndrome Donna L. Mallery,1 Bianca Tanganelli,2 Stefano Colella,2 Herdis Steingrimsdottir,1,* Alain J. van Gool,3,† Christine Troelstra,3 Miria Stefanini,2 and Alan R. Lehmann1 1MRC Cell Mutation Unit, Sussex University, Falmer, Brighton; 2Istituto di Genetica Biochimica ed Evoluzionistica CNR, Pavia, Italy; and 3Department of Cell Biology and Genetics, Erasmus University, Rotterdam Summary variety of carcinogens, including UV light. Three genetic disorders—xeroderma pigmentosum (XP), Cockayne Cockayne syndrome is a multisystem sun-sensitive ge- syndrome (CS), and trichothiodystrophy (TTD)—are as- netic disorder associated with a specific defect in the sociated with defects in NER (Lehmann 1995). Most ability to perform transcription-coupled repair of active patients with XP are deficient in NER and contain mu- genes after UV irradiation. Two complementation tations in one of seven genes (XPA–XPG) whose prod- groups (CS-A and CS-B) have been identified, and 80% ucts are directly involved in NER. The recent discovery of patients have been assigned to the CS-B complemen- that the products of the XPB and XPD genes are com- tation group. We have analyzed the sites of the mutations ponents of the basal transcription factor TFIIH—which in the CSB gene in 16 patients, to determine the spectrum has a dual role, in transcription and as a component of of mutations in this gene and to see whether the nature NER—revealed an unexpected link between DNA repair of the mutation correlates with the type and severity of and transcription (reviewed in Lehmann 1995; Hoeij- the clinical symptoms.