Exploring the Potential of the Sea Cucumber Cucumaria Frondosa As
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Petition to List the Black Teatfish, Holothuria Nobilis, Under the U.S. Endangered Species Act
Before the Secretary of Commerce Petition to List the Black Teatfish, Holothuria nobilis, under the U.S. Endangered Species Act Photo Credit: © Philippe Bourjon (with permission) Center for Biological Diversity 14 May 2020 Notice of Petition Wilbur Ross, Secretary of Commerce U.S. Department of Commerce 1401 Constitution Ave. NW Washington, D.C. 20230 Email: [email protected], [email protected] Dr. Neil Jacobs, Acting Under Secretary of Commerce for Oceans and Atmosphere U.S. Department of Commerce 1401 Constitution Ave. NW Washington, D.C. 20230 Email: [email protected] Petitioner: Kristin Carden, Oceans Program Scientist Sarah Uhlemann, Senior Att’y & Int’l Program Director Center for Biological Diversity Center for Biological Diversity 1212 Broadway #800 2400 NW 80th Street, #146 Oakland, CA 94612 Seattle,WA98117 Phone: (510) 844‐7100 x327 Phone: (206) 324‐2344 Email: [email protected] Email: [email protected] The Center for Biological Diversity (Center, Petitioner) submits to the Secretary of Commerce and the National Oceanographic and Atmospheric Administration (NOAA) through the National Marine Fisheries Service (NMFS) a petition to list the black teatfish, Holothuria nobilis, as threatened or endangered under the U.S. Endangered Species Act (ESA), 16 U.S.C. § 1531 et seq. Alternatively, the Service should list the black teatfish as threatened or endangered throughout a significant portion of its range. This species is found exclusively in foreign waters, thus 30‐days’ notice to affected U.S. states and/or territories was not required. The Center is a non‐profit, public interest environmental organization dedicated to the protection of native species and their habitats. -
Parameterisation and Application of Dynamic Energy Budget Model to Sea Cucumber Apostichopus Japonicus
Vol. 9: 1–8, 2017 AQUACULTURE ENVIRONMENT INTERACTIONS Published January 10 doi: 10.3354/aei00210 Aquacult Environ Interact OPENPEN ACCESSCCESS Parameterisation and application of dynamic energy budget model to sea cucumber Apostichopus japonicus Jeffrey S. Ren1, Jeanie Stenton-Dozey1, Jihong Zhang2,3,* 1National Institute of Water and Atmospheric Research, 10 Kyle Street, PO Box 8602, Christchurch 8440, New Zealand 2Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 106 Nanjing Road, Qingdao 266071, PR China 3Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, 1 Wenhai Road, Aoshanwei, Jimo, Qingdao 266200, PR China ABSTRACT: The sea cucumber Apostichopus japonicus is an important aquaculture species in China. As global interest in sustainable aquaculture grows, the species has increasingly been used for co-culture in integrated multitrophic aquaculture (IMTA). To provide a basis for opti - mising stocking density in IMTA systems, we parameterised and validated a standard dynamic energy budget (DEB) model for the sea cucumber. The covariation method was used to estimate parameters of the model with the DEBtool package. The method is based on minimisation of the weighted sum of squared deviation for datasets and model predictions in one single-step pro- cedure. Implementation of the package requires meaningful initial values of parameters, which were estimated using non-linear regression. Parameterisation of the model suggested that the accuracy of the lower (TL) and upper (TH) boundaries of tolerance temperatures are particularly important, as these would trigger the unique behaviour of the sea cucumber for hibernation and aestivation. After parameterisation, the model was validated with datasets from a shellfish aqua- culture environment in which sea cucumbers were co-cultured with the scallop Chlamys farreri and Pacific oyster Crassostrea gigas at various combinations of density. -
Genomic Insights of Body Plan Transitions from Bilateral to Pentameral Symmetry in Echinoderms
ARTICLE https://doi.org/10.1038/s42003-020-1091-1 OPEN Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms Yongxin Li1, Akihito Omori 2, Rachel L. Flores3, Sheri Satterfield3, Christine Nguyen3, Tatsuya Ota 4, Toko Tsurugaya5, Tetsuro Ikuta6,7, Kazuho Ikeo4, Mani Kikuchi8, Jason C. K. Leong9, Adrian Reich 10, Meng Hao1, Wenting Wan1, Yang Dong 11, Yaondong Ren1, Si Zhang12, Tao Zeng 12, Masahiro Uesaka13, 1234567890():,; Yui Uchida9,14, Xueyan Li 1, Tomoko F. Shibata9, Takahiro Bino15, Kota Ogawa16, Shuji Shigenobu 15, Mariko Kondo 9, Fayou Wang12, Luonan Chen 12,17, Gary Wessel10, Hidetoshi Saiga7,9,18, ✉ ✉ R. Andrew Cameron 19, Brian Livingston3, Cynthia Bradham20, Wen Wang 1,21,22 & Naoki Irie 9,14,22 Echinoderms are an exceptional group of bilaterians that develop pentameral adult symmetry from a bilaterally symmetric larva. However, the genetic basis in evolution and development of this unique transformation remains to be clarified. Here we report newly sequenced genomes, developmental transcriptomes, and proteomes of diverse echinoderms including the green sea urchin (L. variegatus), a sea cucumber (A. japonicus), and with particular emphasis on a sister group of the earliest-diverged echinoderms, the feather star (A. japo- nica). We learned that the last common ancestor of echinoderms retained a well-organized Hox cluster reminiscent of the hemichordate, and had gene sets involved in endoskeleton development. Further, unlike in other animal groups, the most conserved developmental stages were not at the body plan establishing phase, and genes normally involved in bila- terality appear to function in pentameric axis development. These results enhance our understanding of the divergence of protostomes and deuterostomes almost 500 Mya. -
Psolus Phantapus
Maine 2015 Wildlife Action Plan Revision Report Date: January 13, 2016 Psolus phantapus (Psolus) Priority 2 Species of Greatest Conservation Need (SGCN) Class: Holothuroidea (Sea Cucumbers) Order: Dendrochirotida (Sea Cucumbers) Family: Psolidae (Sea Cucumbers) General comments: none No Species Conservation Range Maps Available for Psolus SGCN Priority Ranking - Designation Criteria: Risk of Extirpation: NA State Special Concern or NMFS Species of Concern: NA Recent Significant Declines: Psolus is currently undergoing steep population declines, which has already led to, or if unchecked is likely to lead to, local extinction and/or range contraction. Notes: recent decline - Trott, in review; last record in Cobscook Bay 1973; subjected to targeted collections for public aquaria display; climate change - Arctic Province Species; understudied as dredge by-catch, professional judgement Regional Endemic: NA High Regional Conservation Priority: NA High Climate Change Vulnerability: Psolus phantapus is highly vulnerable to climate change. Understudied rare taxa: Recently documented or poorly surveyed rare species for which risk of extirpation is potentially high (e.g. few known occurrences) but insufficient data exist to conclusively assess distribution and status. *criteria only qualifies for Priority 3 level SGCN* Notes: recent decline - Trott, in review; last record in Cobscook Bay 1973; subjected to targeted collections for public aquaria display; climate change - Arctic Province Species; understudied as dredge by-catch, professional judgement -
Marine Invertebrate Field Guide
Marine Invertebrate Field Guide Contents ANEMONES ....................................................................................................................................................................................... 2 AGGREGATING ANEMONE (ANTHOPLEURA ELEGANTISSIMA) ............................................................................................................................... 2 BROODING ANEMONE (EPIACTIS PROLIFERA) ................................................................................................................................................... 2 CHRISTMAS ANEMONE (URTICINA CRASSICORNIS) ............................................................................................................................................ 3 PLUMOSE ANEMONE (METRIDIUM SENILE) ..................................................................................................................................................... 3 BARNACLES ....................................................................................................................................................................................... 4 ACORN BARNACLE (BALANUS GLANDULA) ....................................................................................................................................................... 4 HAYSTACK BARNACLE (SEMIBALANUS CARIOSUS) .............................................................................................................................................. 4 CHITONS ........................................................................................................................................................................................... -
Swimming Deep-Sea Holothurians (Echinodermata: Holothuroidea) on the Northern Mid-Atlantic Ridge*
Zoosymposia 7: 213–224 (2012) ISSN 1178-9905 (print edition) www.mapress.com/zoosymposia/ ZOOSYMPOSIA Copyright © 2012 · Magnolia Press ISSN 1178-9913 (online edition) Swimming deep-sea holothurians (Echinodermata: Holothuroidea) on the northern Mid-Atlantic Ridge* ANTONINA ROGACHEVA1,3, ANDREY GEBRUK1 & CLAUDIA H.S. ALT2 1 P.P. Shirshov Institute of Oceanology, Russian Academy of Sciences, Moscow, Russia 2 National Oceanography Centre, University of Southampton, Southampton, United Kingdom 3 Corresponding author, E-mail: [email protected] *In: Kroh, A. & Reich, M. (Eds.) Echinoderm Research 2010: Proceedings of the Seventh European Conference on Echinoderms, Göttingen, Germany, 2–9 October 2010. Zoosymposia, 7, xii + 316 pp. Abstract The ability to swim was recorded in 17 of 32 species of deep-sea holothurians during the RRS James Cook ECOMAR cruise in 2010 to the Mid-Atlantic Ridge. Holothurians were observed, photographed, and video recorded using the ROV Isis at four sites around the Charlie-Gibbs Fracture Zone at approximate depths of 2,200–2,800 m. For eleven species swimming is reported for the first time. A number of swimming species were observed on rocks, cliffs and steep slopes with taluses. These habitats are unusual for deep-sea holothurians, which are traditionally common on flat areas with soft sediment rich in detritus. Three species were found exclusively on cliffs. Swimming may provide an advantage in cliff habitats that are inaccessible to most epibenthic deposit-feeders. Key words: sea cucumbers, benthopelagic species, diversity, Northern Atlantic Ocean Introduction Mid-ocean ridges remain one of the least studied environments in the ocean. They are characterised by remoteness, high relief, very complicated topography and complex current regimes. -
SPC Beche-De-Mer Information Bulletin Contains Eight Articles Commercial Species in Tonga and Communications from Several Countries
Secretariat of the Pacific Community ISSN 1025-4943 Issue 33 – May 2013 BECHE-DE-MER information bulletin Inside this issue Editorial Change in weight of sea cucumbers during processing: Ten common This issue of SPC Beche-de-mer Information Bulletin contains eight articles commercial species in tonga and communications from several countries. It also includes abstracts about sea P. Ngaluafe and J. Lee p. 3 cucumbers that were presented at the 14th International Echinoderm Conference First insight into Colombian Caribbean that was held in Brussels in August. sea cucumbers and sea cucumber fishery The first article (p. 3) comes from Tonga. Poasi Ngaluafe and Jessica Lee analyse A. Rodriguez Forero et al. p. 9 the change in weight of ten common commercial sea cucumbers. They discuss the possible reasons for the discrepancy they observe between their results and Strategies for improving survivorship of hatchery-reared juvenile Holothuria previous ones, and the implications for fisheries management in Tonga. scabra in community-managed sea cucumber farms We are also very pleased to present some insights about sea cucumbers and sea A. Rougier et al. p. 14 cucumber fisheries in the Colombian Caribbean. The article is from the team of Holothurian abundance, richness and Adriana Rodríguez Forero (p. 9). They report on species that could be new for the population densities, comparing sites Caribbean and conclude with stressing the importance of initiating a management with different degrees of exploitation in plan for the Colombian fishery resource. the shallow lagoons of Mauritius K. Lampe p. 23 Some news also from Madagascar, where Antoine Rougier et al. -
SPC Beche-De-Mer Information Bulletin #39 – March 2019
ISSN 1025-4943 Issue 39 – March 2019 BECHE-DE-MER information bulletin v Inside this issue Editorial Towards producing a standard grade identification guide for bêche-de-mer in This issue of the Beche-de-mer Information Bulletin is well supplied with Solomon Islands 15 articles that address various aspects of the biology, fisheries and S. Lee et al. p. 3 aquaculture of sea cucumbers from three major oceans. An assessment of commercial sea cu- cumber populations in French Polynesia Lee and colleagues propose a procedure for writing guidelines for just after the 2012 moratorium the standard identification of beche-de-mer in Solomon Islands. S. Andréfouët et al. p. 8 Andréfouët and colleagues assess commercial sea cucumber Size at sexual maturity of the flower populations in French Polynesia and discuss several recommendations teatfish Holothuria (Microthele) sp. in the specific to the different archipelagos and islands, in the view of new Seychelles management decisions. Cahuzac and others studied the reproductive S. Cahuzac et al. p. 19 biology of Holothuria species on the Mahé and Amirantes plateaux Contribution to the knowledge of holo- in the Seychelles during the 2018 northwest monsoon season. thurian biodiversity at Reunion Island: Two previously unrecorded dendrochi- Bourjon and Quod provide a new contribution to the knowledge of rotid sea cucumbers species (Echinoder- holothurian biodiversity on La Réunion, with observations on two mata: Holothuroidea). species that are previously undescribed. Eeckhaut and colleagues P. Bourjon and J.-P. Quod p. 27 show that skin ulcerations of sea cucumbers in Madagascar are one Skin ulcerations in Holothuria scabra can symptom of different diseases induced by various abiotic or biotic be induced by various types of food agents. -
An Illustrated Key to the Sea Cucumbers of the South Atlantic Bight
Prepared by the Southeastern Regional Taxonomic Center AAnn iilllluussttrraatteedd kkeeyy ttoo tthhee sseeaa ccuuccuummbbeerrss ooff tthhee SSoouutthh AAttllaannttiicc BBiigghhtt David L. Pawson and Doris J. Pawson Smithsonian Institution, PO Box 37012, MRC 163, Washington, DC 20013-7012 1 Table of Contents Introduction ..........................................................................................................................3 General Morphology (internal) ................................................................................3 General morphology (external) ................................................................................4 Preparation of ossicles .............................................................................................4 Checklist of South Atlantic Bight holothuroideans ............................................................5 Key to Orders of Holothuroidea known from the South Atlantic Bight ..............................6 Key to members of the Order Dendrochirotida known from the South Atlantic Bight .......9 Key to species of the Aspidochirotida known from the South Atlantic Bight...................28 Key to species of the Molpadiida known from the South Atlantic Bight ..........................34 Key to species of the Apodiida known from the South Atlantic Bight .............................35 This document was prepared by Rachael A. King and is only part of a more extensive study that is expected to be published in 2008. The research was conducted in part using funding -
I. Introduction
Bathymetric distribution of the species .... 210 2. Penetration of species into the Bathymetric zonation of the deep sea ...... 210 Mediterranean deep sea ............. 235 Bathymetric distribution and taxonomic 3. Comparison with other groups ....... 235 relationship .......................... 214 Sediments and nutrient conditions ........ 235 Number of species and individuals in Hydrostatic pressure ..................... 237 relation to depth ...................... 217 Currents ............................... 238 Topography ............................ 238 E. Geographic distribution .................. 219 Conclusion ............................. 239 The exploration of the different geographic regions ............................... 219 G. The hadal fauna ........................ 239 The bathyal fauna ...................... 220 The hadal environment .................. 239 The abyssal fauna ....................... 221 General features of the hadal fauna ....... 240 1. World-wide distributions ............ 223 2. The Antarctic Ocean ................ 224 H. Evolutionary aspects .................... 243 3. The North Atlantic ................. 225 Evolution within the deep sea versus 4. The South Atlantic ................. 227 immigration from shallower depths .... 243 5. The Indian Ocean .................. 22; Geographic variation .................... 244 6. The Indonesian seas ................ 228 1. Clines ............................. 245 7. The Pacific Ocean .................. 231 2. Local variation ..................... 245 8. The Arctic -
Apostichopus Japonicus
Acta Oceanol. Sin., 2018, Vol. 37, No. 5, P. 54–66 DOI: 10.1007/s13131-017-1101-4 http://www.hyxb.org.cn E-mail: [email protected] Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions ZHANG Libin1, 2, FENG Qiming1, 3, SUN Lina1, 2, FANG Yan4, XU Dongxue5, ZHANG Tao1, 2, YANG Hongsheng1, 2* 1 CAS Key laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China 2 Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China 3 University of Chinese Academy of Sciences, Beijing 100049, China 4 School of Agriculture, Ludong University, Yantai 264025, China 5 College of Marine Science and Engineering, Qingdao Agricultural University, Qingdao 266109, China Received 25 January 2017; accepted 9 March 2017 © Chinese Society for Oceanography and Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract Sea cucumber, Apostichopus japonicus is very sensitive to light changes. It is important to study the influence of light on the molecular response of A. japonicus. In this study, RNA-seq provided a general overview of the gene expression profiles of the body walls of A. japonicus exposed to strong light (“light”), normal light (“control”) and fully dark (“dark”) environment. In the comparisons of “control” vs. “dark”, ”control” vs. “light” and “dark” vs. “light”, 1 161, 113 and 1 705 differentially expressed genes (DEGs) were identified following the criteria of |log2ratio|≥1 and FDR≤0.001, respectively. Gene ontology analysis showed that “cellular process” and “binding” enriched the most DEGs in the category of “biological process” and “molecular function”, while “cell” and “cell part” enriched the most DEGs in the category of “cellular component”. -
The Biology of Seashores - Image Bank Guide All Images and Text ©2006 Biomedia ASSOCIATES
The Biology of Seashores - Image Bank Guide All Images And Text ©2006 BioMEDIA ASSOCIATES Shore Types Low tide, sandy beach, clam diggers. Knowing the Low tide, rocky shore, sandstone shelves ,The time and extent of low tides is important for people amount of beach exposed at low tide depends both on who collect intertidal organisms for food. the level the tide will reach, and on the gradient of the beach. Low tide, Salt Point, CA, mixed sandstone and hard Low tide, granite boulders, The geology of intertidal rock boulders. A rocky beach at low tide. Rocks in the areas varies widely. Here, vertical faces of exposure background are about 15 ft. (4 meters) high. are mixed with gentle slopes, providing much variation in rocky intertidal habitat. Split frame, showing low tide and high tide from same view, Salt Point, California. Identical views Low tide, muddy bay, Bodega Bay, California. of a rocky intertidal area at a moderate low tide (left) Bays protected from winds, currents, and waves tend and moderate high tide (right). Tidal variation between to be shallow and muddy as sediments from rivers these two times was about 9 feet (2.7 m). accumulate in the basin. The receding tide leaves mudflats. High tide, Salt Point, mixed sandstone and hard rock boulders. Same beach as previous two slides, Low tide, muddy bay. In some bays, low tides expose note the absence of exposed algae on the rocks. vast areas of mudflats. The sea may recede several kilometers from the shoreline of high tide Tides Low tide, sandy beach.