Ecology of Calamus Sinicus
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Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
GEO REPORT No. 282
EXPERT REPORT ON THE GEOLOGY OF THE PROPOSED GEOPARK IN HONG KONG GEO REPORT No. 282 R.J. Sewell & D.L.K. Tang GEOTECHNICAL ENGINEERING OFFICE CIVIL ENGINEERING AND DEVELOPMENT DEPARTMENT THE GOVERNMENT OF THE HONG KONG SPECIAL ADMINISTRATIVE REGION EXPERT REPORT ON THE GEOLOGY OF THE PROPOSED GEOPARK IN HONG KONG GEO REPORT No. 282 R.J. Sewell & D.L.K. Tang This report was originally produced in June 2009 as GEO Geological Report No. GR 2/2009 2 © The Government of the Hong Kong Special Administrative Region First published, July 2013 Prepared by: Geotechnical Engineering Office, Civil Engineering and Development Department, Civil Engineering and Development Building, 101 Princess Margaret Road, Homantin, Kowloon, Hong Kong. - 3 - PREFACE In keeping with our policy of releasing information which may be of general interest to the geotechnical profession and the public, we make available selected internal reports in a series of publications termed the GEO Report series. The GEO Reports can be downloaded from the website of the Civil Engineering and Development Department (http://www.cedd.gov.hk) on the Internet. Printed copies are also available for some GEO Reports. For printed copies, a charge is made to cover the cost of printing. The Geotechnical Engineering Office also produces documents specifically for publication in print. These include guidance documents and results of comprehensive reviews. They can also be downloaded from the above website. The publications and the printed GEO Reports may be obtained from the Government’s Information Services Department. Information on how to purchase these documents is given on the second last page of this report. -
Possible Aplanochytrid (Labyrinthulea) Prey Detected Using
Plankton Benthos Res 13(2): 75–82, 2018 Plankton & Benthos Research © The Plankton Society of Japan Possible aplanochytrid (Labyrinthulea) prey detected using 18S metagenetic diet analysis in the key copepod species Calanus sinicus in the coastal waters of the subtropical western North Pacific 1,†, 2,3 3,4 1 JUNYA HIRAI *, YOKO HAMAMOTO , DAISKE HONDA & KIYOTAKA HIDAKA 1 National Research Institute of Fisheries Science, Japan Fisheries Research and Education Agency, 2–12–4 Fukuura, Kanazawa, Yokohama, Kanagawa 236–8648, Japan, 2 Graduate School of Natural Science, Konan University, 8–9–1 Okamoto, Higashinada, Kobe, Hyogo 658–8501, Japan 3 Institute for Integrative Neurobiology Konan University, 8–9–1 Okamoto, Higashinada, Kobe, Hyogo 658–8501, Japan 4 Faculty of Science and Engineering, Konan University, 8–9–1 Okamoto, Higashinada, Kobe, Hyogo 658–8501, Japan † Present address: Atmosphere and Ocean Research Institute, The University of Tokyo, 5–1–5 Kashiwanoha, Kashiwa, Chiba, 277–8564, Japan Received 19 September 2017; Accepted 20 February 2018 Responsible Editor: Ryuji Machida Abstract: Metagenetic diet analyses of the 18S V9 region were conducted in 40 adult female Calanus sinicus dur- ing winter in Tosa Bay (Japan). The majority of prey items were small crustaceans (of Copepoda and Cirripedia) and diatoms, taxa that are dominant in the environment and have been previously reported as important prey items of Cala- nus. The abundance of sequences attributable to Dinophyta and Chlorophyta was significantly lower in C. sinicus gut contents than in environmental plankton communities, suggesting that C. sinicus avoids prey from these groups. Hy- drozoans were also observed, and aplanochytrids (Labyrinthulea) were detected for the first time as a major prey of C. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Seasonal Variability of Calanus Sinicus Brodsky in the Western South Yellow Sea
Xiao Wang*, Xin-Ming Pu and Ping Liu Seasonal Variability of Calanus Sinicus Brodsky in the Western South Yellow Sea Abstract: Inter-disciplinary investigations were conducted in the WSYS in 2006– 2007 to study the spatial and temporal variations of Calanus sinicus and its influenc- ing factors. The distribution of C. sinicus in summer varied from that in spring in accordance with the change of the temperature. The species aggregated in the YSCWM to elude the high abundance in the surface and coastal waters. In autumn, the bottom-up effect played a crucial role in the population size. The abundance at the stations in and adjacent the oceanic front was also relatively high. In winter, the highest abundance presented in Haizhou Bay which was related to the entrainment of the YSWC. The abundance was low south of 35 °N thanks to the transportation of the YSWC and the YSCC and relatively high abundance north of 35 °N was related to the jacking effect of the YSWC. Keywords: Distribution pattern; Seasonal variability; Calanus sinicus; South Yellow Sea 1 Introduction Calanus sinicus Brodsky is comprehensively studied in the northwest Pacific Ocean thanks to its extensive distribution[1]and common dominance in zooplankton com- munity [2–3]. Meanwhile, it is the main part of diets of predators with different sizes. Since it was chosen as the target species of China GLOBEC, its distribution in sum- mer [4], life history strategy [5], feeding [6] and reproduction [7] were studied in details in the western South Yellow Sea (WSYS). The Yellow Sea (YS) is a main population centre of this copepod. -
Note for Public Works Subcommittee of Finance Committee
For information PWSCI(2005-06)20 NOTE FOR PUBLIC WORKS SUBCOMMITTEE OF FINANCE COMMITTEE Supplementary information on 340DS - Port Shelter sewerage stage 3 – Sai Kung Area 4 and Mang Kung Uk sewerage INTRODUCTION In considering the paper referenced PWSC(2005-06)31 on the above project on 23 November 2005, the Public Works Subcommittee (PWSC) requested the Administration to – (a) provide supplementary information to account for any discrepancy between the computer modeling predictions in planning for the Stonecutters Island Sewage Treatment Works (SCISTW), and the actual impact of the SCISTW on the water quality of the Tsuen Wan beaches; (b) provide information on computer modeling used for assessing the impact of the sewerage and associated facilities in Sai Kung on the water quality and that adopted for the SCISTW; (c) report the E. coli level in the surrounding marine waters and beaches after the completion of the project; and (d) provide the Administration’s information paper on the project to the Sai Kung District Council (SKDC) for SKDC Members’ comments before the relevant FC meeting. THE ADMINISTRATION’S RESPONSE Comparison between Water Quality Predictions and Actual Impact for SCISTW 2. The SCISTW was built as part of the sewerage facilities under the Harbour Area Treatment Scheme (HATS) Stage 1. It is now providing chemical /treatment ..... PWSCI(2005-06)20 Page 2 treatment for 1.4 million m3/day i.e. 75% of the sewage generated from both sides of Victoria Harbour. Treated effluent is discharged via an outfall at the western harbour without disinfection. When the scheme was first introduced, water quality assessments were conducted using the “Water Quality and Hydraulic Models” (WAHMO) computer model suite in 1996. -
Designing Victoria Harbour: Integrating, Improving, and Facilitating Marine Activities
Designing Victoria Harbour: Integrating, Improving, and Facilitating Marine Activities By: Brian Berard, Jarrad Fallon, Santiago Lora, Alexander Muir, Eric Rosendahl, Lucas Scotta, Alexander Wong, Becky Yang CXP-1006 Designing Victoria Harbour: Integrating, Improving, and Facilitating Marine Activities An Interactive Qualifying Project Report Submitted to the Faculty of WORCESTER POLYTECHNIC INSTITUTE in partial fulfilment of the requirements for the Degree of Bachelor of Science In cooperation with Designing Hong Kong, Ltd., Hong Kong Submitted on March 5, 2010 Sponsoring Agencies: Designing Hong Kong, Ltd. Harbour Business Forum On-Site Liaison: Paul Zimmerman, Convener of Designing Hong Kong Harbour District Submitted by: Brian Berard Eric Rosendahl Jarrad Fallon Lucas Scotta Santiago Lora Alexander Wong Alexander Muir Becky Yang Submitted to: Project Advisor: Creighton Peet, WPI Professor Project Co-advisor: Andrew Klein, WPI Assistant Professor Project Co-advisor: Kent Rissmiller, WPI Professor Abstract Victoria Harbour is one of Hong Kong‟s greatest assets; however, the balance between recreational and commercial uses of the harbour favours commercial uses. Our report, prepared for Designing Hong Kong Ltd., examines this imbalance from the marine perspective. We audited the 50km of waterfront twice and conducted interviews with major stakeholders to assess necessary improvements to land/water interfaces and to provide recommendations on improvements to the land/water interfaces with the goal of making Victoria Harbour a truly “living” harbour. ii Acknowledgements Our team would like to thank the many people that helped us over the course of this project. First, we would like to thank our sponsor, Paul Zimmerman, for his help and dedication throughout our project and for providing all of the resources and contacts that we required. -
Egn201216507825.Ps, Page 2 @ Preflight
G.N. 7825 Roads (Works, Use and Compensation) Ordinance (Chapter 370) as applied by section 26 of the Water Pollution Control (Sewerage) Regulation (Chapter 358, sub. leg.) PART OF PWP ITEM NO. 4273DS—PORT SHELTER SEWERAGE, STAGE 3, SEWERAGE AT TAI PO TSAI (Notice under section 8(2) of the Roads (Works, Use and Compensation) Ordinance as applied by section 26 of the Water Pollution Control (Sewerage) Regulation) Notice is hereby given that the Director of Environmental Protection proposes to execute the sewerage works within the limit of works area as shown on Plan No. 382770/WPCR/2.1/001 (the ‘Plan’) and described in the scheme annexed thereto, which Plan and scheme have been deposited in the Land Registry. The general nature of the proposed sewerage works is as follows:— (i) construction of about 2 900 metres of gravity sewers and associated manholes within the limit of works area as shown on the Plan; and (ii) ancillary works including temporary closure and reinstatement of carriageways, footpaths and open space. The Plan and the scheme may be inspected by members of the public, free of charge, at the following locations and during the following hours when those offices are normally open to the public:— Opening Hours Places (except on public holidays) Central and Western District Office, ⎫ ⎪ Public Enquiry Service Centre, ⎬ Monday to Friday Unit 5, Ground Floor, The Center, ⎪ 9.00 a.m.–7.00 p.m. 99 Queen’s Road Central, Hong Kong ⎭ District Lands Office, Sai Kung, ⎫ Monday to Friday 3rd Floor, Sai Kung Government Offices, ⎬ 8.45 a.m.–12.30 p.m. -
Title Heritage Preservation Other Contributor(S)University of Hong Kong Author(S) Tsang, Wai-Yee; 曾惠怡 Citation Issued Date
Title Heritage preservation Other Contributor(s) University of Hong Kong Author(s) Tsang, Wai-yee; 曾惠怡 Citation Issued Date 2009 URL http://hdl.handle.net/10722/131001 Rights Creative Commons: Attribution 3.0 Hong Kong License THE UNIVERSITY OF HONG KONG HERITAGE PRESERVATION: THE AFTER-USE OF MILITARY STRUCTURES IN HONG KONG A DISSERTATION SUBMITTED TO THE FACULTY OF ARCHITECTURE IN CANDIDACY FOR THE DEGREE OF BACHELOR OF SCIENCE IN SURVEYING DEPARTMENT OF REAL ESTATE AND CONSTRUCTION BY TSANG WAI YEE HONG KONG APRIL 2009 DECLARATION I declare that this dissertation represents my own work, except where due acknowledgement is made, and that it has not been previously included in a thesis, dissertation or report submitted to this University or to any other institution for a degree, diploma or other qualification. Signed: _______________________ Named: _______________________ Date: _______________________ - i - CONTENTS LIST OF ILLUSTRATIONS ......................................................................v LIST OF TABLES ......................................................................................x ACKNOWLEDGEMENTS..................................................................... xii LIST OF ABBREVIATIONS ................................................................. xiii ABSTRACT............................................................................................ xiv INTRODUCTION...................................................................................1 Research Context .................................................................................1 -
1 : 20 000 Geological Map Sheet Index (Series Hgm20
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Feasibility Study of Fishing Tourism in Hong Kong
CENTRAL POLICY UNIT THE GOVERNMENT OF THE HONG KONG SPECIAL ADMINISTRATIVE REGION FEASIBILITY STUDY OF FISHING TOURISM IN HONG KONG THE HONG KONG POLYTECHNIC UNIVERSITY JANUARY 2011 Final Report for the Feasibility Study of Fishing Tourism in Hong Kong Prepared by School of Hotel & Tourism Management The Hong Kong Polytechnic University Table of Contents Executive Summary......................................................................................................- 1 - 摘要 ................................................................................................................................- 5 - 1. Introduction...........................................................................................................- 9 - 1.1. Background.........................................................................................................- 9 - 1.2. Objectives .........................................................................................................- 10 - 1.3. Study Approach.................................................................................................- 10 - 1.4. Structure of the Report......................................................................................- 11 - 1.5. Defining Fishing Tourism .................................................................................- 11 - 1.6. Limitations ........................................................................................................- 12 - 2. Overview of Commercial Fishing and the Fishing Sector...............................- -
Annual Variation in Calanussinicus Abundance and Population
Chinese Journal of Oceanology and Limnology Vol. 31 No. 6, P. 1284-1294, 2013 http://dx.doi.org/10.1007/s00343-013-3004-3 Annual variation in Calanus sinicus abundance and population structure in the northern boundary area of the Yellow Sea Cold Water Mass* YIN Jiehui (尹洁慧) 1, 2 , ZHANG Guangtao (张光涛) 1 , * * , ZHAO Zengxia (赵增霞) 1 , WANG Shiwei (王世伟) 1 , WAN Aiyong (万艾勇) 1 1 Jiaozhou Bay Marine Ecosystem Research Station, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China 2 University of Chinese Academy of Sciences, Beijing 100049, China Received Jan. 6, 2013; accepted in principle Mar. 11, 2013; accepted for publication May 9, 2013 © Chinese Society for Oceanology and Limnology, Science Press, and Springer-Verlag Berlin Heidelberg 2013 Abstract The Yellow Sea Cold Water Mass (YSCWM) was suggested as an over-summering site of the dominant copepod species Calanus sinicus in coastal Chinese seas. Population abundance and structure were investigated by monthly sampling along three transects across the northern boundary of the YSCWM during 2009–2010. Results show that thermal stratifi cation existed from June to October and that the vertical thermal difference increased with depth. Generally, total abundance was lowest in October and highest in June, and the female/male sex ratio was highest in February and lowest in August. Evident spatial differences in abundance were observed during the existence of the YSCWM. In June, total abundance averaged 158.8 ind/m3 at well-stratifi ed stations, and 532.1 ind/m3 at other stations. Similarly, high abundances of 322.0 and 324.4 ind/m3 were recorded from July to August inside the YSCWM, while the abundance decreased from 50.4 to 1.9 ind/m3 outside the water mass.