Initial Lichen Inventory of the Trinity Alps Wilderness
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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
Botanical Memo
Appendix C Botanical Memo 10 May 2015 To Willow Creek Community Service District Copy to Patrick Kaspari, Senior Project Manager, GHD Inc. From Cara Scott, Botanist, GHD Inc. Tel 707.443.8326 Subject Special-Status Plant Species Survey and Mapping for Job no. 8410746.05 the Downtown Wastewater Development Project, Willow Creek, CA 1 Introduction On April 10 and May 8, 2015, special-status plant surveys and mapping were conducted for the proposed Downtown Wastewater Development Project in Willow Creek, Humboldt County, California . This survey attempted to identify all vascular plants within the project boundary and to document the presence of special-status plants. The purpose of these surveys was to map presence of special-status plant species and to document the approximate number of individuals and percent cover for each occurrence observed. The results will be used to reduce impacts associated with project construction and to avoid special-status plant populations 1.1 Location The unincorporated community of Willow Creek is located in Humboldt County approximately 45 miles northeast of Eureka, California as shown in Figure 1, Attachment 1. Willow Creek is situated along the Trinity River, which is part of the Klamath River Basin. The Willow Creek Community Services District (WCCSD or District) service area or district boundary is shown on Figure 2 and primarily consists of properties along State Highways 299 and 96. The Pacific Ocean is located approximately 26 miles to the west. The site corresponds to portions of Sections 32 and 33, Township 7 North, Range 5 East on the USGS 7.5 Minute Willow Creek and Salyer quadrangles. -
Oaks (Quercus Spp.): a Brief History
Publication WSFNR-20-25A April 2020 Oaks (Quercus spp.): A Brief History Dr. Kim D. Coder, Professor of Tree Biology & Health Care / University Hill Fellow University of Georgia Warnell School of Forestry & Natural Resources Quercus (oak) is the largest tree genus in temperate and sub-tropical areas of the Northern Hemisphere with an extensive distribution. (Denk et.al. 2010) Oaks are the most dominant trees of North America both in species number and biomass. (Hipp et.al. 2018) The three North America oak groups (white, red / black, and golden-cup) represent roughly 60% (~255) of the ~435 species within the Quercus genus worldwide. (Hipp et.al. 2018; McVay et.al. 2017a) Oak group development over time helped determine current species, and can suggest relationships which foster hybridization. The red / black and white oaks developed during a warm phase in global climate at high latitudes in what today is the boreal forest zone. From this northern location, both oak groups spread together southward across the continent splitting into a large eastern United States pathway, and much smaller western and far western paths. Both species groups spread into the eastern United States, then southward, and continued into Mexico and Central America as far as Columbia. (Hipp et.al. 2018) Today, Mexico is considered the world center of oak diversity. (Hipp et.al. 2018) Figure 1 shows genus, sub-genus and sections of Quercus (oak). History of Oak Species Groups Oaks developed under much different climates and environments than today. By examining how oaks developed and diversified into small, closely related groups, the native set of Georgia oak species can be better appreciated and understood in how they are related, share gene sets, or hybridize. -
A Bibliography of Klamath Mountains Geology, California and Oregon
U.S. DEPARTMENT OF THE INTERIOR U.S. GEOLOGICAL SURVEY A bibliography of Klamath Mountains geology, California and Oregon, listing authors from Aalto to Zucca for the years 1849 to mid-1995 Compiled by William P. Irwin Menlo Park, California Open-File Report 95-558 1995 This report is preliminary and has not been reviewed for conformity with U.S. Geological Survey editorial standards (or with the North American Stratigraphic Code). Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government. PREFACE This bibliography of Klamath Mountains geology was begun, although not in a systematic or comprehensive way, when, in 1953, I was assigned the task of preparing a report on the geology and mineral resources of the drainage basins of the Trinity, Klamath, and Eel Rivers in northwestern California. During the following 40 or more years, I maintained an active interest in the Klamath Mountains region and continued to collect bibliographic references to the various reports and maps of Klamath geology that came to my attention. When I retired in 1989 and became a Geologist Emeritus with the Geological Survey, I had a large amount of bibliographic material in my files. Believing that a comprehensive bibliography of a region is a valuable research tool, I have expended substantial effort to make this bibliography of the Klamath Mountains as complete as is reasonably feasible. My aim was to include all published reports and maps that pertain primarily to the Klamath Mountains, as well as all pertinent doctoral and master's theses. -
Alder Canopy Dieback and Damage in Western Oregon Riparian Ecosystems
Alder Canopy Dieback and Damage in Western Oregon Riparian Ecosystems Sims, L., Goheen, E., Kanaskie, A., & Hansen, E. (2015). Alder canopy dieback and damage in western Oregon riparian ecosystems. Northwest Science, 89(1), 34-46. doi:10.3955/046.089.0103 10.3955/046.089.0103 Northwest Scientific Association Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Laura Sims,1, 2 Department of Botany and Plant Pathology, Oregon State University, 1085 Cordley Hall, Corvallis, Oregon 97331 Ellen Goheen, USDA Forest Service, J. Herbert Stone Nursery, Central Point, Oregon 97502 Alan Kanaskie, Oregon Department of Forestry, 2600 State Street, Salem, Oregon 97310 and Everett Hansen, Department of Botany and Plant Pathology, 1085 Cordley Hall, Oregon State University, Corvallis, Oregon 97331 Alder Canopy Dieback and Damage in Western Oregon Riparian Ecosystems Abstract We gathered baseline data to assess alder tree damage in western Oregon riparian ecosystems. We sought to determine if Phytophthora-type cankers found in Europe or the pathogen Phytophthora alni subsp. alni, which represent a major threat to alder forests in the Pacific Northwest, were present in the study area. Damage was evaluated in 88 transects; information was recorded on damage type (pathogen, insect or wound) and damage location. We evaluated 1445 red alder (Alnus rubra), 682 white alder (Alnus rhombifolia) and 181 thinleaf alder (Alnus incana spp. tenuifolia) trees. We tested the correlation between canopy dieback and canker symptoms because canopy dieback is an important symptom of Phytophthora disease of alder in Europe. We calculated the odds that alder canopy dieback was associated with Phytophthora-type cankers or other biotic cankers. -
Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska
AN ABSTRACT OF THE THESIS OF Kaleigh Spickerman for the degree of Master of Science in Botany and Plant Pathology presented on June 11, 2015 Title: Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska Abstract approved: ______________________________________________________ Bruce McCune Functional traits of vascular plants have been an important component of ecological studies for a number of years; however, in more recent times vascular plant ecologists have begun to formalize a set of key traits and universal system of trait measurement. Many recent studies hypothesize global generality of trait patterns, which would allow for comparison among ecosystems and biomes and provide a foundation for general rules and theories, the so-called “Holy Grail” of ecology. However, the majority of these studies focus on functional trait patterns of vascular plants, with a minority examining the patterns of cryptograms such as lichens. Lichens are an important component of many ecosystems due to their contributions to biodiversity and their key ecosystem services, such as contributions to mineral and hydrological cycles and ecosystem food webs. Lichens are also of special interest because of their reliance on atmospheric deposition for nutrients and water, which makes them particularly sensitive to air pollution. Therefore, they are often used as bioindicators of air pollution, climate change, and general ecosystem health. This thesis examines the functional trait patterns of lichens in two contrasting regions with fundamentally different kinds of data. To better understand the patterns of lichen functional traits, we examined reproductive, morphological, and chemical trait variation along precipitation and temperature gradients in Oregon. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Cladoniaceae, Ascomycota)
Persoonia 37, 2016: 1–12 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X688081 Sharpening the species boundaries in the Cladonia mediterranea complex (Cladoniaceae, Ascomycota) R. Pino-Bodas1, I. Pérez-Vargas2, S. Stenroos1, T. Ahti1, A.R. Burgaz 3 Key words Abstract The complex Cladonia mediterranea belongs to the section Impexae and is formed by C. azorica, C. maca ronesica and C. mediterranea. These species are basically distributed in the Mediterranean and Macaronesian coalescence Regions. In the present work the limits between the species of this complex are re-examined. To this end, the mor- Iberian Peninsula phological characters were studied along with the secondary metabolites and the DNA sequences from three loci integrative taxonomy (ITS rDNA, IGS rDNA and rpb2). The morphological data were studied by principal component analysis (PCA), while lichen forming fungi the DNA sequences were analyzed using several approaches available to delimit species: genealogical concor dance Macaronesia phylogenetic species recognition, species tree (BEAST* and spedeSTEM) and cohesion species recognition. In molecular systematic addition, the genealogical sorting index was used in order to assess the monophyly of the species. The different species delimitation procedures used in our study turned out to be highly congruent with respect to the limits they establish, but these taxonomy limits are not the ones separating the prior species. Either the morphological analysis or the different approaches to species delimitation indicate that C. mediterranea is a different species from C. macaronesica, while C. azorica and C. macaronesica, which are reduced to synonyms of C. portentosa, constitute a separate lineage. -
Trinity Alps Proposed Wilderness Area Additions
Proposed Wilderness Pattison Northern California Mountains and Rivers Trinity Alps Proposed Wilderness Area Additions Description Quick Facts The southern proposed additions are composed of rugged, heavily forested Management Agencies: mid to low-elevation country that would complement the adjacent Shasta-Trinity and Six Rivers highlands of the Trinity Alps Wilderness if protected. National Forests The Wild and Scenic New River, Canyon Creek Proposed Wild and Scenic River and other streams that flow out of the proposed additions provide Location: cold, clear water essential for the survival of endangered steelhead trout Trinity and Humboldt nd and coho and Chinook salmon populations in the Trinity River. Large Counties, CA; 2 boulders and abundant small waterfalls grace many of these streams, and Congressional District the fish can often be seen leaping up the rapids to spawn. Watershed: The New River watershed is well known for its purity, even during fierce Trinity River rainstorms. The proposed additions are an extremely important refuge for unique and endangered species, including nine rare plants. Reminders of Size: 73,802 acres the area’s Gold Rush history abound in the proposed additions in the form of abandoned mines, rock piles, and ditches. As is the case in the adjacent Recreational Uses: Trinity Alps Wilderness, these disturbances are more often than not covered Whitewater boating, by vegetation, and do not in any way detract from the region’s overall wild swimming, picnicking, character. Indeed, these historical features simply add to the public’s hiking, horseback riding, fascination with this wild, remote country. The New River offers challenging hunting, fishing, scenic vistas. -
Lichens and Allied Fungi of the Indiana Forest Alliance
2017. Proceedings of the Indiana Academy of Science 126(2):129–152 LICHENS AND ALLIED FUNGI OF THE INDIANA FOREST ALLIANCE ECOBLITZ AREA, BROWN AND MONROE COUNTIES, INDIANA INCORPORATED INTO A REVISED CHECKLIST FOR THE STATE OF INDIANA James C. Lendemer: Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY 10458-5126 USA ABSTRACT. Based upon voucher collections, 108 lichen species are reported from the Indiana Forest Alliance Ecoblitz area, a 900 acre unit in Morgan-Monroe and Yellowwood State Forests, Brown and Monroe Counties, Indiana. The lichen biota of the study area was characterized as: i) dominated by species with green coccoid photobionts (80% of taxa); ii) comprised of 49% species that reproduce primarily with lichenized diaspores vs. 44% that reproduce primarily through sexual ascospores; iii) comprised of 65% crustose taxa, 29% foliose taxa, and 6% fruticose taxa; iv) one wherein many species are rare (e.g., 55% of species were collected fewer than three times) and fruticose lichens other than Cladonia were entirely absent; and v) one wherein cyanolichens were poorly represented, comprising only three species. Taxonomic diversity ranged from 21 to 56 species per site, with the lowest diversity sites concentrated in riparian corridors and the highest diversity sites on ridges. Low Gap Nature Preserve, located within the study area, was found to have comparable species richness to areas outside the nature preserve, although many species rare in the study area were found only outside preserve boundaries. Sets of rare species are delimited and discussed, as are observations as to the overall low abundance of lichens on corticolous substrates and the presence of many unhealthy foliose lichens on mature tree boles. -
Bulletin of the California Lichen Society
Bulletin of the California Lichen Society Volume 5 No. 1 Summer 1998 The California Lichen Society seeks to promote the appreciation, conservation, and study of the lichens. The focus of the Society is on California, but its interests include the entire western part of the continent. Dues are $15 per year ( $20 for foreign subscribers) payable to The Cal ifornia Li chen Society, 362 Scenic Avenue, Santa Rosa, CA, 95407. Members receive the Bulletin and notices of meetings, field trips, and workshops. The Bulletin of the California Lichen Society (ISSN 1 093-9148) is edited by Isabelle Tavares, Shirley Tucker, William Sanders, Richard Moe, and Darrell Wright and is produced by Richard Moe. The Bulletin welcomes manuscripts on technical topics in lichenology relating to western North America and on conservation of the lichens, as well as news of lichenologists and their activities. Manuscripts may be submitted to Richard Moe, Bulletin of the California Lichen Society, University Herbarium, 1001 Valley Life Sciences Bldg . #2465, University of California, Berkeley, CA 94 720-2465. The best way to submit manuscripts apart from short articles and announcements is by E-mail or on diskette in Word Perfect or Microsoft Word format; ASCII format is a very good alternative. Manuscripts should be double-spaced. Figures are the usual line drawings and sharp black and white glossy photos, unmounted, and must be sent by surface mail. A review process is followed . Nomenclature follows Esslinger and Egan's Sixth Checklist (The Bryologist 98: 467-549, 1995). and subsequent on-line updateshttp://www.ndsu.nodak.edul instruct/chcklst/chcklst7 .htm.