P75ntr-Dependent Rac1 Activation Requires Receptor Cleavage And
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HEF1 (NEDD9) Mouse Monoclonal Antibody [Clone ID: 2G9] Product Data
OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TA319568 HEF1 (NEDD9) Mouse Monoclonal Antibody [Clone ID: 2G9] Product data: Product Type: Primary Antibodies Clone Name: 2G9 Applications: IF, WB Recommend Dilution: ELISA: 1:5,000 - 1:20,000, WB: 1:5,000, IF: 1:500, IP: 1:1,000 Reactivity: Human Host: Mouse Clonality: Monoclonal Immunogen: Anti-HEF1 monoclonal antibody was produced by repeated immunizations with a synthetic peptide corresponding to amino acid residues 82-398 of human HEF1 protein (hHEF1, 843 aa, predicted MW 92.8 kDa). Formulation: 0.02 M Potassium Phosphate, 0.15 M Sodium Chloride, pH 7.2 Concentration: 1 mg/ml Gene Name: neural precursor cell expressed, developmentally down-regulated 9 Database Link: NP_001135865 Entrez Gene 4739 Human Synonyms: CAS-L; CAS2; CASL; CASS2; HEF1 This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2020 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 3 HEF1 (NEDD9) Mouse Monoclonal Antibody [Clone ID: 2G9] – TA319568 Note: HEF1, also known as Enhancer of filamentation 1, CRK-associated substrate-related protein, CAS-L, CasL, p105 and Neural precursor cell expressed developmentally down-regulated 9 is the product of the NEDD9 (CASGL) gene. HEF1 functions as a docking protein that plays a central coordinating role for tyrosine-kinase-based signaling related to cell adhesion. HEF1 may also function in transmitting growth control signals between focal adhesions at the cell periphery and the mitotic spindle in response to adhesion or growth factor signals initiating cell proliferation. -
Supplemental Table S1
Entrez Gene Symbol Gene Name Affymetrix EST Glomchip SAGE Stanford Literature HPA confirmed Gene ID Profiling profiling Profiling Profiling array profiling confirmed 1 2 A2M alpha-2-macroglobulin 0 0 0 1 0 2 10347 ABCA7 ATP-binding cassette, sub-family A (ABC1), member 7 1 0 0 0 0 3 10350 ABCA9 ATP-binding cassette, sub-family A (ABC1), member 9 1 0 0 0 0 4 10057 ABCC5 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 1 0 0 0 0 5 10060 ABCC9 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 1 0 0 0 0 6 79575 ABHD8 abhydrolase domain containing 8 1 0 0 0 0 7 51225 ABI3 ABI gene family, member 3 1 0 1 0 0 8 29 ABR active BCR-related gene 1 0 0 0 0 9 25841 ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 1 0 1 0 0 10 30 ACAA1 acetyl-Coenzyme A acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A thiol 0 1 0 0 0 11 43 ACHE acetylcholinesterase (Yt blood group) 1 0 0 0 0 12 58 ACTA1 actin, alpha 1, skeletal muscle 0 1 0 0 0 13 60 ACTB actin, beta 01000 1 14 71 ACTG1 actin, gamma 1 0 1 0 0 0 15 81 ACTN4 actinin, alpha 4 0 0 1 1 1 10700177 16 10096 ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0 1 0 0 0 17 94 ACVRL1 activin A receptor type II-like 1 1 0 1 0 0 18 8038 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 1 0 0 0 0 19 8751 ADAM15 ADAM metallopeptidase domain 15 (metargidin) 1 0 0 0 0 20 8728 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 1 0 0 0 0 21 81792 ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 1 0 0 0 0 22 9507 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 -
Immunohistochemical Expression of NEDD9, E-Cadherin and Γ-Catenin and Their Prognostic Significance in Pancreatic Ductal Adenocarcinoma (PDAC)
BOSNIAN JOURNAL of Basic Medical Sciences RESEARCH ARTICLE WWW.BJBMS.ORG Immunohistochemical expression of NEDD9, E-cadherin and γ-catenin and their prognostic significance in pancreatic ductal adenocarcinoma (PDAC) Petra Radulović*, Božo Krušlin Department of Pathology and Cytology, Sestre Milosrdnice University Hospital, Zagreb, Croatia ABSTRACT Extensive research is being conducted to identify novel diagnostic, predictive and prognostic biomarkers for pancreatic ductal adenocarcinoma (PDAC), as only a few markers have been routinely used so far with limited success. Our aim was to assess the expression of neural precur- sor cell expressed developmentally down-regulated protein 9 (NEDD9), E-cadherin, and γ-catenin in PDAC in relation to clinicopathological parameters and patient survival. We also investigated if there is a correlation of NEDD9 expression with E-cadherin or γ-catenin. The protein expression was determined by immunohistochemistry in 61 PDAC and 61 samples of normal pancreatic tissue. The log rank test and Kaplan- Meier survival curve were used for survival analysis. E-cadherin and γ-catenin expressions were reduced in PDAC, and completely retained in normal pancreatic tissue. Expression of NEDD9 was significantly increased in PDAC (strong expression in 78.7% of cases and moderate in 21.3%) and reduced in normal pancreatic tissue (strong positivity in 45.9% of cases, moderate in 31.1%, and weak in 23%). There was a positive correlation between reduced E-cadherin and γ-catenin expression in PDAC (p = 0.015). The loss or reduced expression of E-cadherin had a negative impact on patient survival (p = 0.020). A negative correlation between E-cadherin expression and tumor grade was also observed (p = 0.011). -
Dioxin) Receptor
TOXICOLOGICAL SCIENCES 124(1), 1–22 (2011) doi:10.1093/toxsci/kfr218 Advance Access publication September 9, 2011 Exactly the Same but Different: Promiscuity and Diversity in the Molecular Mechanisms of Action of the Aryl Hydrocarbon (Dioxin) Receptor Michael S. Denison,*,1 Anatoly A. Soshilov,* Guochun He,* Danica E. DeGroot,* and Bin Zhao† Downloaded from *Department of Environmental Toxicology, University of California, Davis, California 95616; and †Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China 1To whom correspondence should be addressed at Department of Environmental Toxicology, University of California, Meyer Hall, One Shields Avenue, Davis, CA 95616-8588. Fax: (530) 752-3394. E-mail: [email protected]. http://toxsci.oxfordjournals.org/ Received June 6, 2011; accepted August 12, 2011 toxic effects in a wide range of species and tissues (Beischlag The Ah receptor (AhR) is a ligand-dependent transcription et al., 2008; Furness and Whelan, 2009; Hankinson, 2005; factor that mediates a wide range of biological and toxicological Humblet et al., 2008; Marinkovic´ et al., 2010; Poland and effects that result from exposure to a structurally diverse variety Knutson, 1982; Safe, 1990; White and Birnbaum, 2009). The of synthetic and naturally occurring chemicals. Although the overall mechanism of action of the AhR has been extensively best-characterized high-affinity ligands for the AhR include at University of California, Davis - Library on May 4, 2012 studied and involves a classical nuclear receptor mechanism of a wide variety of ubiquitous hydrophobic environmental action (i.e., ligand-dependent nuclear localization, protein hetero- contaminants such as the halogenated aromatic hydrocarbons dimerization, binding of liganded receptor as a protein complex to (HAHs) and nonhalogenated polycyclic aromatic hydrocarbons its specific DNA recognition sequence and activation of gene (PAHs). -
Functions of Nogo Proteins and Their Receptors in the Nervous System
REVIEWS Functions of Nogo proteins and their receptors in the nervous system Martin E. Schwab Abstract | The membrane protein Nogo-A was initially characterized as a CNS-specific inhibitor of axonal regeneration. Recent studies have uncovered regulatory roles of Nogo proteins and their receptors — in precursor migration, neurite growth and branching in the developing nervous system — as well as a growth-restricting function during CNS maturation. The function of Nogo in the adult CNS is now understood to be that of a negative regulator of neuronal growth, leading to stabilization of the CNS wiring at the expense of extensive plastic rearrangements and regeneration after injury. In addition, Nogo proteins interact with various intracellular components and may have roles in the regulation of endoplasmic reticulum (ER) structure, processing of amyloid precursor protein and cell survival. Nogo proteins were discovered, and have been exten- The amino-terminal segments of the proteins sively studied, in the context of injury and repair of fibre encoded by the different RTN genes have differing tracts in the CNS1 — a topic of great research interest lengths and there is no homology between them3,5. The and clinical relevance. However, much less in known N termini of the RTN4 products Nogo-A and Nogo-B are about the physiological functions of Nogo proteins in identical, consisting of a 172-amino acid sequence that development and in the intact adult organism, including is encoded by a single exon (exon 1) that is followed by in the brain. Through a number of recent publications, a short exon 2 and, in Nogo-A, by the very long exon Nogo proteins have emerged as important regulators of 3 encoding 800 amino acids2,6 (FIG. -
This Research Was Originally Published in the Journal of Biological Chemistry
This research was originally published in The Journal of Biological Chemistry. By Bradbury P, Bach CT, Paul A, O’Neill GM, Titled: Src Kinase Determines the Dynamic Exchange of the Docking Protein NEDD9 (Neural Precursor Cell Expressed Developmentally Down-regulated Gene 9) at Focal Adhesions. 2014 ;289(36): 24792-24800. doi:10.1074/jbc.M113.544106. Final publication is available at http://www.jbc.org/content/289/36/24792.long © 2016 The American Society for Biochemistry and Molecular Biology. Src and molecular exchange at adhesions Src Kinase Determines the Dynamic Exchange of the Docking Protein NEDD9 at Focal Adhesions* Peta Bradbury,1, 2 Cuc T Bach,1 Andre Paul,1 and Geraldine M O’Neill1, 2 1From the Children’s Cancer Research Unit, Kids Research Institute at The Children’s Hospital at Westmead, NSW, 2145 2Discipline of Paediatrics and Child Health, University of Sydney, NSW, 2006 * Running title: Src and molecular exchange at adhesions To whom correspondence should be addressed: Geraldine M. O’Neill, Children’s Cancer Research Unit, The Children’s Hospital at Westmead, Locked Bag 4001, Westmead, 2145, Australia Tel.: 61 2 98451206; Fax: 61 2 98453078; Email: [email protected] Key Words: NEDD9; focal adhesion; FRAP; Src kinase; FAK; migration Background: Dynamic exchange provides a focal adhesions is key in modulating rates of mechanism for rapidly reorganizing migration and invasion. Our study suggests that macromolecular structures. Src kinase activity determines NEDD9 Results: Exchange of the focal adhesion targeted exchange at focal adhesions and may similarly protein NEDD9 between the cytoplasm and focal modulate other focal adhesion-targeted Src adhesions is faster in the absence of Src kinase substrates to regulate cell migration. -
NEDD9 Depletion Destabilizes Aurora a Kinase and Heightens the Efficacy of Aurora a Inhibitors: Implications for Treatment of Metastatic Solid Tumors
Published OnlineFirst March 28, 2013; DOI: 10.1158/0008-5472.CAN-12-4008 Cancer Tumor and Stem Cell Biology Research NEDD9 Depletion Destabilizes Aurora A Kinase and Heightens the Efficacy of Aurora A Inhibitors: Implications for Treatment of Metastatic Solid Tumors Ryan J. Ice4, Sarah L. McLaughlin4, Ryan H. Livengood3, Mark V. Culp2, Erik R. Eddy2, Alexey V. Ivanov1,4, and Elena N. Pugacheva1,4 Abstract Aurora A kinase (AURKA) is overexpressed in 96% of human cancers and is considered an independent marker of poor prognosis. While the majority of tumors have elevated levels of AURKA protein, few have AURKA gene amplification, implying that posttranscriptional mechanisms regulating AURKA protein levels are significant. Here, we show that NEDD9, a known activator of AURKA, is directly involved in AURKA stability. Analysis of a comprehensive breast cancer tissue microarray revealed a tight correlation between the expression of both proteins, significantly corresponding with increased prognostic value. A decrease in AURKA, concomitant with increased ubiquitination and proteasome-dependent degradation, occurs due to depletion or knockout of NEDD9. Reexpression of wild-type NEDD9 was sufficient to rescue the observed phenomenon. Binding of NEDD9 to AURKA is critical for AURKA stabilization, as mutation of S296E was sufficient to disrupt binding and led to reduced AURKA protein levels. NEDD9 confers AURKA stability by limiting the binding of the cdh1–substrate recognition subunit of APC/C ubiquitin ligase to AURKA. Depletion of NEDD9 in tumor cells increases sensitivity to AURKA inhibitors. Combination therapy with NEDD9 short hairpin RNAs and AURKA inhibitors impairs tumor growth and distant metastasis in mice harboring xenografts of breast tumors. -
Recombinant Mouse Ngr (C-6His) Derived from Human Cells
Catalog # CM42 Recombinant Mouse NgR (C-6His) Derived from Human Cells Recombinant Mouse Nogo-66 Receptor/Reticulon 4 Receptor is produced by our Mammalian expression system and the target gene encoding Cys27-Ser447 is expressed with a 6His tag at the C-terminus. DESCRIPTION Accession Q99PI8 Known as Reticulon-4 Receptor; Nogo Receptor; NgR; Nogo-66 Receptor; RTN4R; NOGOR Mol Mass 46.6kDa AP Mol Mass 75-85 kDa, reducing conditions. QUALITY CONTROL Purity Greater than 95% as determined by reducing SDS-PAGE. Endotoxin Less than 0.1 ng/µg (1 EU/µg) as determined by LAL test. FORMULATION Lyophilized from a 0.2 μm filtered solution of PBS, pH 7.4. Always centrifuge tubes before opening. Do not mix by vortex or pipetting. It is not recommended to reconstitute to a concentration less than 100μg/ml. RECONSTITUTION Dissolve the lyophilized protein in distilled water. Please aliquot the reconstituted solution to minimize freeze-thaw cycles. The product is shipped at ambient temperature. SHIPPING Upon receipt, store it immediately at the temperature listed below. Lyophilized protein should be stored at < -20°C, though stable at room temperature for 3 weeks. STORAGE Reconstituted protein solution can be stored at 4-7°C for 2-7 days. Aliquots of reconstituted samples are stable at < -20°C for 3 months. Nogo Receptor (NgR) is a glycosylphosphoinositol (GPI)-anchored protein that belongs to the Nogo recptor family. Human NgR is predominantly expressed in neurons and their axons in the central nervous systems. As a receptor for myelin-derived proteins Nogo, myelin-associated glycoprotein (MAG) and myelin BACKGROUND oligodendrocyte glycoprotein (OMG), NgR mediates axonal growth inhibition and may play a role in regulating axonal regeneration and plasticity in the adult central nervous system. -
Recombinant Human Nogo Receptor/Ngr Fc Chimera
Recombinant Human Nogo Receptor/NgR Fc Chimera Catalog Number: 1208-NG DESCRIPTION Source Mouse myeloma cell line, NS0derived Human Nogo Receptor Human IgG (Cys27 Ser 447) IEGRMD 1 (Pro100 Lys330) Accession # Q9BZR6 Nterminus Cterminus Nterminal Sequence Cys27 Analysis Structure / Form Disulfidelinked homodimer Predicted Molecular 71.8 kDa (monomer) Mass SPECIFICATIONS SDSPAGE 95105 kDa, reducing conditions Activity Measured by its ability to bind rrMAG/Fc Chimera in a functional ELISA. Endotoxin Level <0.01 EU per 1 μg of the protein by the LAL method. Purity >95%, by SDSPAGE under reducing conditions and visualized by silver stain. Formulation Lyophilized from a 0.2 μm filtered solution in PBS. See Certificate of Analysis for details. PREPARATION AND STORAGE Reconstitution Reconstitute at 100 μg/mL in sterile PBS. Shipping The product is shipped at ambient temperature. Upon receipt, store it immediately at the temperature recommended below. Stability & Storage Use a manual defrost freezer and avoid repeated freezethaw cycles. l 12 months from date of receipt, 20 to 70 °C as supplied. l 1 month, 2 to 8 °C under sterile conditions after reconstitution. l 3 months, 20 to 70 °C under sterile conditions after reconstitution. BACKGROUND Nogo Receptor (NgR), also named reticulon 4 receptor, is a glycosylphosphoinositol (GPI)anchored protein that belongs to the family of leucinerich repeat (LRR) proteins (1). It is expressed predominantly in the central nervous systems in neurons and their axons. NgR plays an essential role in mediating axon growth inhibition induced by the structurally distinct myelinderived proteins Nogo, myelinassociated glycoprotein (MAG), and myelin oligodendrocyte glycoprotein (Omgp) (2, 3). -
Roles of Neural Precursor Cell Expressed, Developmentally Downregulated 9 in Tumor-Associated Cellular Processes (Review)
MOLECULAR MEDICINE REPORTS 12: 6415-6421, 2015 Roles of neural precursor cell expressed, developmentally downregulated 9 in tumor-associated cellular processes (Review) SISEN ZHANG and LIHUA WU Emergency Department, People's Hospital of Zhengzhou, Zhengzhou, Henan 450000, P.R. China Received September 26, 2014; Accepted June 15, 2015 DOI: 10.3892/mmr.2015.4240 Abstract. Neural precursor cell expressed, developmentally 1. Introduction downregulated 9 (NEDD9), a gene exclusively expressed in the brain during embryonic stages but not in brains of adult Neural precursor cell expressed, developmentally downregu- mice, is an important cytoskeletal protein and regarded lated 9 (NEDD9), a gene exclusively expressed in the brain as a ‘router/hub’ in cellular signal transduction processes during embryonic stages but not in the brains of mature mice, connecting external stimulation signals with downstream was firstly identified in 1992 by Kumar et al (1) by subtrac- target proteins that can directly promote tumor metastasis. tive cloning technology. In 1996, Law et al (2) was the first Numerous studies showed that NEDD9 has an essential to ascribe a biological function to NEDD9. They screened a role in cell proliferation, apoptosis, adhesion, migration and number of genes that can induce the sprouting of filamentous invasion. The roles of NEDD9, including the underlying yeast and found a number of proteins that was able to regulate mechanisms of its regulation of cell migration, its distinc- human cell polarity and the cell cycle. Among these proteins, tive functions in various tumor stages and its association human enhancer of filamentation 1 (HEF1) is expressed in a with other diseases, are required to be elucidated at large. -
Limiting Neuronal Nogo Receptor 1 Signaling During Experimental Autoimmune Encephalomyelitis Preserves Axonal Transport and Abrogates Inflammatory Demyelination
5562 • The Journal of Neuroscience, July 10, 2019 • 39(28):5562–5580 Neurobiology of Disease Limiting Neuronal Nogo Receptor 1 Signaling during Experimental Autoimmune Encephalomyelitis Preserves Axonal Transport and Abrogates Inflammatory Demyelination Jae Young Lee,1,4* Min Joung Kim,1* Speros Thomas,1 XViola Oorschot,5 Georg Ramm,6 XPei Mun Aui,1 Yuichi Sekine,7 X Devy Deliyanti,2 XJennifer Wilkinson-Berka,2 Be’eri Niego,3 XAlan R. Harvey,8,9 Paschalis Theotokis,10 X Catriona McLean,11 XStephen M. Strittmatter,7 and XSteven Petratos1 Departments of 1Neuroscience, 2Diabetes, 3Australian Centre of Blood Diseases, Central Clinical School, Monash University, Prahran, Victoria 3004, Australia, 4ToolGen Inc., Gasan Digital-Ro, Geumcheon, 08501, Seoul, Korea, 5Monash Ramaciotti Centre for Cryo Electron Microscopy, 6Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute and Monash Ramaciotti Centre for Cryo Electron Microscopy, Monash University, Melbourne, Victoria 3800, Australia, 7Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, Connecticut 06536, 8School of Human Sciences, The University of Western Australia, Nedlands, Washington 6009, Australia, 9Perron Institute for Neurological and Translational Science, Washington, Australia, 10B’ Department of Neurology, Laboratory of Experimental Neurology and Neuroimmunology, AHEPA University Hospital, 54636, Thessaloniki, Macedonia, Greece, and 11Department of Anatomical Pathology, Alfred Hospital, Prahran, Victoria 3004, Australia We previously identified that ngr1 allele deletion limits the severity of experimental autoimmune encephalomyelitis (EAE) by preserving axonal integrity. However, whether this favorable outcome observed in EAE is a consequence of an abrogated neuronal-specific patho- physiological mechanism, is yet to be defined. Here we show that, Cre-loxP-mediated neuron-specific deletion of ngr1 preserved axonal integrity, whereas its re-expression in ngr1؊/؊ female mice potentiated EAE-axonopathy. -
Pooled Extracellular Receptor-Ligand Interaction Screening Using CRISPR Activation Zheng-Shan Chong1, Shuhei Ohnishi2, Kosuke Yusa2 and Gavin J
Chong et al. Genome Biology (2018) 19:205 https://doi.org/10.1186/s13059-018-1581-3 METHOD Open Access Pooled extracellular receptor-ligand interaction screening using CRISPR activation Zheng-Shan Chong1, Shuhei Ohnishi2, Kosuke Yusa2 and Gavin J. Wright1* Abstract Extracellular interactions between cell surface receptors are necessary for signaling and adhesion but identifying them remains technically challenging. We describe a cell-based genome-wide approach employing CRISPR activation to identify receptors for a defined ligand. We show receptors for high-affinity antibodies and low-affinity ligands can be unambiguously identified when used in pools or as individual binding probes. We apply this technique to identify ligands for the adhesion G-protein-coupled receptors and show that the Nogo myelin- associated inhibitory proteins are ligands for ADGRB1. This method will enable extracellular receptor-ligand identification on a genome-wide scale. Keywords: Cell surface receptors, Cell signaling, CRISPR activation, Extracellular protein interactions, Flow cytometry, Genome-wide screening, G-protein-coupled receptor, Monoclonal antibodies Background captured in addressed arrays and tested for direct bind- Identifying cell surface receptors for ligands such as pro- ing with prey proteins that are oligomerized to increase teins, small molecules, or whole pathogens, is an import- local avidity and permit the detection of even very weak ant step towards understanding how intercellular interactions. While this approach has enabled the con- signaling events are initiated and discovering new drug struction of extracellular protein-protein interaction net- targets. Because the extracellular regions of receptors – are directly accessible to systemically delivered therapeu- works [4 6], creating comprehensive libraries containing tics, particularly monoclonal antibodies, these proteins thousands of different recombinant proteins is impracti- and their interactions are highly valued targets and cal for most laboratories.