On the Mechanism of the Generation of Petroleum
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Characterization of N-Alkanes, Pristane and Phytane in the Cretaceous/ Tertiary Boundary Sediments at Kawaruppu, Hokkaido, Japan
Geochemical Journal, Vol. 33, pp. 285 to 294, 1999 Characterization of n-alkanes, pristane and phytane in the Cretaceous/ Tertiary boundary sediments at Kawaruppu, Hokkaido, Japan HAJIME MITA and AKIRA SHIMOYAMA Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan (Received December 24, 1998; Accepted April 22 , 1999) Normal alkanes from C12 to C36, pristane and phytane were identified in the Cretaceous/Tertiary (K/T) boundary sediments at Kawaruppu, Hokkaido, Japan. These compounds were found at the levels of sub to a few nmol g-1. Total concentrations of the n-alkanes within the boundary claystone were generally one third to one half of those in the sediments above and below the claystone. The smaller concentrations within the claystone were mainly due to smaller concentrations of longer chain n-alkanes (C25 to C31) than in the sediments above and below it. The longer chain n-alkanes were likely from terrestrial plants and reflected their small population at the end of Cretaceous. The concentration of longer chain n-alkanes decreased rapidly at the base of the boundary claystone, indicating the sudden cease of terrestrial n-alkane input, continued low to the horizon at the upper two thirds of the claystone and then, started increasing toward the top of the claystone. The n-alkane concentration change indicates the period of the small input of terrestrial n-alkanes to be ca. 7,000 years at most and the recovery period to be ca. 2,000 years. The depth distribution pattern of pristane plus phytane concentrations in the K/T sediments roughly resembles that of the n-alkanes. -
Carbon Geochemistry of Serpentinites in the Lost City Hydrothermal System (30°N, MAR)
Available online at www.sciencedirect.com Geochimica et Cosmochimica Acta 72 (2008) 3681–3702 www.elsevier.com/locate/gca Carbon geochemistry of serpentinites in the Lost City Hydrothermal System (30°N, MAR) Ade´lie Delacour a,*, Gretchen L. Fru¨h-Green a, Stefano M. Bernasconi b, Philippe Schaeffer c, Deborah S. Kelley d a Institute for Mineralogy and Petrology, ETH Zurich, CH-8092 Zurich, Switzerland b Geological Institute, ETH Zurich, CH-8092 Zurich, Switzerland c Laboratoire de Ge´ochimie Bioorganique, UMR 7177 du CNRS, Universite´ Louis Pasteur, Strasbourg, France d School of Oceanography, University of Washington, Seattle, WA 98195, USA Received 18 June 2007; accepted in revised form 30 April 2008; available online 24 May 2008 Abstract The carbon geochemistry of serpentinized peridotites and gabbroic rocks recovered at the Lost City Hydrothermal Field (LCHF) and drilled at IODP Hole 1309D at the central dome of the Atlantis Massif (Mid-Atlantic Ridge, 30°N) was exam- ined to characterize carbon sources and speciation in oceanic basement rocks affected by long-lived hydrothermal alteration. Our study presents new data on the geochemistry of organic carbon in the oceanic lithosphere and provides constraints on the fate of dissolved organic carbon in seawater during serpentinization. The basement rocks of the Atlantis Massif are charac- 13 terized by total carbon (TC) contents of 59 ppm to 1.6 wt% and d CTC values ranging from À28.7& to +2.3&. In contrast, 13 total organic carbon (TOC) concentrations and isotopic compositions are relatively constant (d CTOC: À28.9& to À21.5&) 13 and variations in d CTC reflect mixing of organic carbon with carbonates of marine origin. -
De Novo Biosynthesis of Terminal Alkyne-Labeled Natural Products
De novo biosynthesis of terminal alkyne-labeled natural products Xuejun Zhu1,2, Joyce Liu2,3, Wenjun Zhang1,2,4* 1Department of Chemical and Biomolecular Engineering, 2Energy Biosciences Institute, 3Department of Bioengineering, University of California, Berkeley, CA 94720, USA. 4Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. *e-mail:[email protected] 1 Abstract: The terminal alkyne is a functionality widely used in organic synthesis, pharmaceutical science, material science, and bioorthogonal chemistry. This functionality is also found in acetylenic natural products, but the underlying biosynthetic pathways for its formation are not well understood. Here we report the characterization of the first carrier protein- dependent terminal alkyne biosynthetic machinery in microbes. We further demonstrate that this enzymatic machinery can be exploited for the in situ generation and incorporation of terminal alkynes into two natural product scaffolds in E. coli. These results highlight the prospect for tagging major classes of natural products, including polyketides and polyketide/non-ribosomal peptide hybrids, using biosynthetic pathway engineering. 2 Natural products are important small molecules widely used as drugs, pesticides, herbicides, and biological probes. Tagging natural products with a unique chemical handle enables the visualization, enrichment, quantification, and mode of action study of natural products through bioorthogonal chemistry1-4. One prevalent bioorthogonal reaction is -
Lipid Analysis of CO2-Rich Subsurface Aquifers Suggests an Autotrophy-Based Deep Biosphere with Lysolipids Enriched in CPR Bacteria
The ISME Journal (2020) 14:1547–1560 https://doi.org/10.1038/s41396-020-0624-4 ARTICLE Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria 1,2 3,4 1,3 3 3 Alexander J. Probst ● Felix J. Elling ● Cindy J. Castelle ● Qingzeng Zhu ● Marcus Elvert ● 5,6 6 1 7,9 7 Giovanni Birarda ● Hoi-Ying N. Holman ● Katherine R. Lane ● Bethany Ladd ● M. Cathryn Ryan ● 8 3 1 Tanja Woyke ● Kai-Uwe Hinrichs ● Jillian F. Banfield Received: 20 November 2018 / Revised: 5 February 2020 / Accepted: 25 February 2020 / Published online: 13 March 2020 © The Author(s) 2020. This article is published with open access Abstract Sediment-hosted CO2-rich aquifers deep below the Colorado Plateau (USA) contain a remarkable diversity of uncultivated microorganisms, including Candidate Phyla Radiation (CPR) bacteria that are putative symbionts unable to synthesize membrane lipids. The origin of organic carbon in these ecosystems is unknown and the source of CPR membrane lipids remains elusive. We collected cells from deep groundwater brought to the surface by eruptions of Crystal Geyser, sequenced 1234567890();,: 1234567890();,: the community, and analyzed the whole community lipidome over time. Characteristic stable carbon isotopic compositions of microbial lipids suggest that bacterial and archaeal CO2 fixation ongoing in the deep subsurface provides organic carbon for the complex communities that reside there. Coupled lipidomic-metagenomic analysis indicates that CPR bacteria lack complete lipid biosynthesis pathways but still possess regular lipid membranes. These lipids may therefore originate from other community members, which also adapt to high in situ pressure by increasing fatty acid unsaturation. -
Stable Carbon and Hydrogen Isotopic Fractionation of Individual N-Alkanes Accompanying Biodegradation: Evidence from a Group of Progressively Biodegraded Oils
中国科技论文在线 http://www.paper.edu.cn Organic Geochemistry 36 (2005) 225–238 Stable carbon and hydrogen isotopic fractionation of individual n-alkanes accompanying biodegradation: evidence from a group of progressively biodegraded oils Yongge Sun a,*, Zhenyan Chen b, Shiping Xu a, Pingxia Cai a a SKLOG, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Wushan, Guangzhou 510640, PR China b Exploration and Development Research Institute of Liaohe Oil Field Branch Company, PetroChina, Panjing, Liaoning 124010, PR China Received 10 March 2004; accepted 16 August 2004 (returned to author for revision 16 April 2004) Available online 11 November 2004 Abstract Seven crude oils of known source and maturity, representing a natural sequence of increasing degree of biodegrada- tion, were collected from reservoirs in the Liaohe Basin, NE China, in an effort to determine the magnitude and direction of isotopic shift of carbon and hydrogen in individual n-alkanes during microbial degradation. The results show that bio- degradation has little effect on the carbon isotopic composition of the whole oil. However, a sequential loss of n-alkanes leads to 13C depletion of the bulk residual saturate fraction. The stable carbon isotopic compositions of aromatics and macromolecular organic matter (resins and asphaltenes) follow a pattern, with an overall trend towards 13C enrichment of 0.8–1.7& in the residues. The stable carbon and hydrogen isotope values of individual n-alkanes demonstrate that they follow different trends during biodegradation. No significant carbon isotopic fractionation occurs for n-alkanes during slight to moderate biodegradation. However, there is a general increase of up to 4& in the d13C values of low molecular weight n-alkanes (C15–C18) during heavy biodegradation. -
Dehydrogenation by Heterogeneous Catalysts
Dehydrogenation by Heterogeneous Catalysts Daniel E. Resasco School of Chemical Engineering and Materials Science University of Oklahoma Encyclopedia of Catalysis January, 2000 1. INTRODUCTION Catalytic dehydrogenation of alkanes is an endothermic reaction, which occurs with an increase in the number of moles and can be represented by the expression Alkane ! Olefin + Hydrogen This reaction cannot be carried out thermally because it is highly unfavorable compared to the cracking of the hydrocarbon, since the C-C bond strength (about 246 kJ/mol) is much lower than that of the C-H bond (about 363 kJ/mol). However, in the presence of a suitable catalyst, dehydrogenation can be carried out with minimal C-C bond rupture. The strong C-H bond is a closed-shell σ orbital that can be activated by oxide or metal catalysts. Oxides can activate the C-H bond via hydrogen abstraction because they can form O-H bonds, which can have strengths comparable to that of the C- H bond. By contrast, metals cannot accomplish the hydrogen abstraction because the M- H bonds are much weaker than the C-H bond. However, the sum of the M-H and M-C bond strengths can exceed the C-H bond strength, making the process thermodynamically possible. In this case, the reaction is thought to proceed via a three centered transition state, which can be described as a metal atom inserting into the C-H bond. The C-H bond bridges across the metal atom until it breaks, followed by the formation of the corresponding M-H and M-C bonds.1 Therefore, dehydrogenation of alkanes can be carried out on oxides as well as on metal catalysts. -
Production of Pure Hydrogen by Ethanol Dehydrogenation Abstract
The Future Role of Hydrogen in Petrochemistry and Energy Supply DGMK Conference October 4-6, 2010, Berlin, Germany Production of Pure Hydrogen by Ethanol Dehydrogenation E. Santacesaria, G. Carotenuto, R. Tesser, M. Di Serio University of Naples “Federico II”, Department of Chemistry, Naples, Italy Abstract Hydrogen production from bio-ethanol is one of the most promising renewable processes to generate electricity using fuel cells. In this work, we have studied the production of pure hydrogen as by product of ethanol dehydrogenation reaction. This reaction is promoted by copper based catalysts and according to the catalyst used and the operative conditions gives place to acetaldehyde or ethyl acetate as main products. We studied in particular the performance of a commercial copper/copper chromite catalyst, supported on alumina and containing barium chromate as promoter that has given the best results. By operating at low pressure and temperature with short residence times, acetaldehyde is more selectively produced, while, by increasing the pressure (10-30 bars), the temperature (200-260°C) and the residence time (about 100 (grams hour/mol) of ethanol contact time) the selectivity is shifted to the production of ethyl acetate. However, in both cases pure hydrogen is obtained, as by product, that can easily be separated. Hydrogen obtained in this way is exempt of CO and can be directly fed to fuel cells without any inconvenience. In this work, runs performed in different operative conditions have been reported with the scope to individuate the best conditions. A carrier of H2 6% in N2 has been used. The studied catalyst has also shown a good thermal stability with respect to sintering phenomena, that generally occurs during the -1 -1 dehydrogenation on other copper catalysts. -
Development of Compound-Specific Hydrogen Isotope Ratio Analysis Of
Development of Compound-Specific Hydrogen Isotope Ratio Analysis of Biomarkers and their Application as New Proxy for Reconstruction of Palaeoenvironment and Palaeoclimate Entwicklung komponentenspezifischer Wasserstoffisotopen- Analyse von Biomarkern und deren Anwendung als neuartiger Proxy zur Rekonstruktion von Paläoumwelt und Paläoklima Dissertation zur Erlangung des akademischen Grades doctor rerum naturalium (Dr. rer. nat.) vorgelegt dem Rat der Chemisch-Geowissenschaftlichen Fakultät der Friedrich-Schiller-Universität Jena von Diplom Geologe Jens Radke geboren am 20.2.1967 in Bremerhaven Gutachter: 1. Prof.Dr.R.Gaupp 2. PD.Dr.G.Gleixner Tag der öffentlichen Verteidigung: 18.1.2006 Printed on 100% recycled paper (after ISO9706, 133 CIE, DIN 6738 LDK 24-85) Content Content ABSTRACT KURZFASSUNG ABBREVIATIONS 1 INTRODUCTION ......................................................................................................... 1 2 FRACTIONATION OF WATER ISOTOPES IN THE ENVIRONMENT ........................................ 2 2.1 Fractionation of water isotopes in the climate system......................................... 2 2.2 Fractionation of hydrogen in the biosynthesis of plant biomass.......................... 3 3 SEDIMENTS AND METHODS........................................................................................ 6 3.1 Sediment samples and stratigraphic framework ................................................. 6 3.2 Sample preparation for bulk and compound specific analysis ............................ 8 3.2.1 Sample -
Process Technologies and Projects for Biolpg
energies Review Process Technologies and Projects for BioLPG Eric Johnson Atlantic Consulting, 8136 Gattikon, Switzerland; [email protected]; Tel.: +41-44-772-1079 Received: 8 December 2018; Accepted: 9 January 2019; Published: 15 January 2019 Abstract: Liquified petroleum gas (LPG)—currently consumed at some 300 million tonnes per year—consists of propane, butane, or a mixture of the two. Most of the world’s LPG is fossil, but recently, BioLPG has been commercialized as well. This paper reviews all possible synthesis routes to BioLPG: conventional chemical processes, biological processes, advanced chemical processes, and other. Processes are described, and projects are documented as of early 2018. The paper was compiled through an extensive literature review and a series of interviews with participants and stakeholders. Only one process is already commercial: hydrotreatment of bio-oils. Another, fermentation of sugars, has reached demonstration scale. The process with the largest potential for volume is gaseous conversion and synthesis of two feedstocks, cellulosics or organic wastes. In most cases, BioLPG is produced as a byproduct, i.e., a minor output of a multi-product process. BioLPG’s proportion of output varies according to detailed process design: for example, the advanced chemical processes can produce BioLPG at anywhere from 0–10% of output. All these processes and projects will be of interest to researchers, developers and LPG producers/marketers. Keywords: Liquified petroleum gas (LPG); BioLPG; biofuels; process technologies; alternative fuels 1. Introduction Liquified petroleum gas (LPG) is a major fuel for heating and transport, with a current global market of around 300 million tonnes per year. -
Determination of Petroleum Hydrocarbons in Sediments
UNITED NATIONS ENVIRONMENT PROGRAMME NOVEMBER 1992 Determination of petroleum hydrocarbons in sediments Reference Methods For Marine Pollution Studies No. 20 Prepared in co-operation with IOC IAEA UNEP 1992 ~ i - PREFACE The Regional Seas Programme was initiated by UNEP in 1974. Since then the Governing Conncil ofUNEP has repeatedly endorsed a regional approach to the control of marine pollution and the management of marine and coastal resources and has requested the development of regional action plans. The Regional Seas Progranune at present includes ten regions and has over 120 coastal States participating in it (1),(2). One of the basic components of the action plans sponsored by UNEP in the framework of the Regional Seas Programme is the assessment of the state of the marine em~ronment and of its resources, and of the sources and trends of the pollution, and the impact of pollution on human health, marine ecosystems and amenities. In order to assist those participating in this activity and to ensure that the data obtained through this assessment can be compared. on a world-wide basis and thns contribute to the Global Environment Monitoring System (GEMS) of UNEP, a set of Reference Methods and Guidelines for marine pollution studies is being developed as part of a programme of c9mprehensive technical support which includes the provision of expert advice, reference methods and materials, training and data quality assurance (3). The Methods are recommended to be adopted by Governments participating in tbe Regional Seas Programme. The methods and guidelines are prepared in co-operation with the relevant specialized bodies of the United Nations system as well as other organizations and are tested by a number of experts competent in the field relevant to the methods described. -
Catalytic Hydrogenation and Dehydrogenation Reactions of N-Alkyl-Bis(Carbazole)-Based Hydrogen Storage Materials
catalysts Article Catalytic Hydrogenation and Dehydrogenation Reactions of N-alkyl-bis(carbazole)-Based Hydrogen Storage Materials Joori Jung 1,2,†, Byeong Soo Shin 3,4,†, Jeong Won Kang 4,5,* and Won-Sik Han 1,* 1 Department of Chemistry, Seoul Women’s University, Seoul 01797, Korea; [email protected] 2 REYON Pharmaceutical, Co., Ltd., Anyang 01459, Korea 3 Hyundai Motor Company, Strategy & Technology Division, Ulwang 16082, Korea; [email protected] 4 Department of Chemical and Biological Engineering, Korea University, Seoul 02841, Korea 5 Graduate School of Energy and Environment, Korea University, Seoul 02841, Korea * Correspondence: [email protected] (J.W.K.); [email protected] (W.-S.H.) † These authors contributed equally. Abstract: Recently, there have been numerous efforts to develop hydrogen-rich organic materials because hydrogen energy is emerging as a renewable energy source. In this regard, we designed and prepared four new materials based on N-alkyl-bis(carbazole), 9,90-(2-methylpropane-1,3-diyl)bis(9H- carbazole) (MBC), 9,90-(2-ethylpropane-1,3-diyl)bis(9H-carbazole) (EBC), 9,90-(2-propylpropane-1,3- diyl)bis(9H-carbazole) (PBC), and 9,90-(2-butylpropane-1,3-diyl)bis(9H-carbazole) (BBC), to investi- gate their hydrogen adsorption/hydrogen desorption reactivity depending on the length of the alkyl chain. The gravimetric densities of MBC, EBC, PBC, and BBC were 5.86, 5.76, 5.49, and 5.31 H2 wt %, respectively, again depending on the alkyl chain length. All materials showed complete hydro- genation reactions under ruthenium on an alumina catalyst at 190 ◦C, and complete reverse reactions ◦ and dehydrogenation reactions were observed under palladium on an alumina catalyst at <280 C. -
Upper Jurassic–Lower Cretaceous Source Rocks in the North Of
geosciences Article Upper Jurassic–Lower Cretaceous Source Rocks in the North of Western Siberia: Comprehensive Geochemical Characterization and Reconstruction of Paleo-Sedimentation Conditions Evgeniya Leushina 1,* , Timur Bulatov 1 , Elena Kozlova 1, Ivan Panchenko 2 , Andrey Voropaev 3, Tagir Karamov 1, Yakov Yermakov 1, Natalia Bogdanovich 1 and Mikhail Spasennykh 1 1 Skolkovo Institute of Science and Technology, Territory of Innovation Center “Skolkovo”, Bolshoy Boulevard 30, Bld. 1, 121205 Moscow, Russia; [email protected] (T.B.); [email protected] (E.K.); [email protected] (T.K.); [email protected] (Y.Y.); [email protected] (N.B.); [email protected] (M.S.) 2 MIMGO, Entuziastov Highway 21, 111123 Moscow, Russia; [email protected] 3 HYDROISOTOP GmbH, Woelkestr. 9, 85301 Schweitenkirchen, Germany; [email protected] * Correspondence: [email protected] Abstract: The present work is devoted to geochemical studies of the Bazhenov Formation in the north of the West Siberian Petroleum Basin. The object is the Upper Jurassic–Lower Cretaceous section, characterized by significant variations in total organic carbon content and petroleum gener- Citation: Leushina, E.; Bulatov, T.; ation potential of organic matter at the beginning of the oil window. The manuscript presents the Kozlova, E.; Panchenko, I.; Voropaev, integration of isotopic and geochemical analyses aimed at the evaluation of the genesis of the rocks in A.; Karamov, T.; Yermakov, Y.; the peripheral part of the Bazhenov Sea and reconstruction of paleoenvironments that controlled the Bogdanovich, N.; Spasennykh, M. accumulation of organic matter in sediments, its composition and diagenetic alterations. According Upper Jurassic–Lower Cretaceous to the obtained data, the sediments were accumulated under marine conditions with a generally Source Rocks in the North of Western moderate and periodically increasing terrigenous influx.