The Occurrence of Brassicasterol and Epibrassicasterol in the Chromophycota
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University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Safety Assessment of Red Algae-Derived Ingredients As Used in Cosmetics
Safety Assessment of Red Algae-Derived Ingredients as Used in Cosmetics Status: Draft Report for Panel Review Release Date: August 21, 2020 Panel Meeting Date: September 14 – 15, 2020 The Expert Panel for Cosmetic Ingredient Safety members are: Chair, Wilma F. Bergfeld, M.D., F.A.C.P.; Donald V. Belsito, M.D.; Curtis D. Klaassen, Ph.D.; Daniel C. Liebler, Ph.D.; James G. Marks, Jr., M.D.; Lisa A. Peterson, Ph.D.; Ronald C. Shank, Ph.D.; Thomas J. Slaga, Ph.D.; and Paul W. Snyder, D.V.M., Ph.D. The Cosmetic Ingredient Review (CIR) Executive Director is Bart Heldreth, Ph.D. This safety assessment was prepared by Priya Cherian, Scientific Analyst/Writer, CIR. © Cosmetic Ingredient Review 1620 L Street, NW, Suite 1200 ♢ Washington, DC 20036-4702 ♢ ph 202.331.0651 ♢ fax 202.331.0088 ♢ [email protected] Algal diversity and application. Rex L. Lowe Bowling Green State University Presentation Roadmap What are these things called algae? Species diversity & properties Ecosystem services, Ecosystem hazards Algal communities might look homogeneous but are very complex A stone this size may contain hundreds of species in a very complex community. A complex community of epilithic algae A complex community of epiphytic algae on Cladophora Ra = Rhoicosphenia abbreviata Esp = Epithemia sp. Es = Epithemia sorex Am = Achnanthidium minutissimum Cp = Cocconeis pediculus Cpl = Cocconeis placentula C = Cladophora What are algae? Algos = Latin seaweed Phycos = Greek seaweed ♦Thalloid organisms bearing chlorophyll a, lacking multicellular gametangia and their colorless relatives. ♦Morphologically diverse: ♦Prokaryotes, mesokaryotes, eukaryotes ♦Largest to smallest phototrophs (0.5µm-220 m) ♦Physiologically diverse: autotrophs, facultative heterotrophs, obligate heterotrophs (molecules or particles), parasites). -
Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
Seasonal and Depth Variations in Molecular and Isotopic Alkenone Composition of Sinking Particles from the Western Title North Pacific
Seasonal and depth variations in molecular and isotopic alkenone composition of sinking particles from the western Title North Pacific Author(s) Yamamoto, Masanobu; Shimamoto, Akifumi; Fukuhara, Tatsuo; Naraoka, Hiroshi; Tanaka, Yuichiro; Nishimura, Akira Deep Sea Research Part I : Oceanographic Research Papers, 54(9), 1571-1592 Citation https://doi.org/10.1016/j.dsr.2007.05.012 Issue Date 2007-09 Doc URL http://hdl.handle.net/2115/28776 Type article (author version) File Information DSR54-9.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Seasonal and depth variations in molecular and isotopic alkenone composition of sinking particles from the western North Pacific Masanobu Yamamoto1,*, Akifumi Shimamoto2, Tatsuo Fukuhara2, Hiroshi Naraoka3, Yuichiro Tanaka4 and Akira Nishimura4 1Faculty of Environmental Earth Science, Hokkaido University, Sapporo 060-0810, Japan. 2The General Environmental Technos Co., LTD., Osaka 541-0052, Japan. 3Department of Earth Sciences, Okayama University, Okayama 700-8530, Japan. 4National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki 305-8567, Japan *Corresponding author; [email protected] Abstract: Seasonal and depth variations in alkenone flux and molecular and isotopic composition of sinking particles were examined using a 21-month time-series sediment trap experiment at a mooring station WCT-2 (39°N, 147°E) in the mid-latitude NW Pacific to assess the influences of seasonality, production depth, and degradation in the K’ water column on the alkenone unsaturation index U 37. Analysis of the underlying sediments was also conducted to evaluate the effects of alkenone degradation at the 1 K’ K’ water-sediment interface on U 37. -
Isolation and Characterization of Two Sterols from the Green Alga, Selenastrum Capricornutum
Portland State University PDXScholar Dissertations and Theses Dissertations and Theses 1-1-1976 Isolation and characterization of two sterols from the green alga, Selenastrum capricornutum Raymond Mark Owings Portland State University Follow this and additional works at: https://pdxscholar.library.pdx.edu/open_access_etds Let us know how access to this document benefits ou.y Recommended Citation Owings, Raymond Mark, "Isolation and characterization of two sterols from the green alga, Selenastrum capricornutum" (1976). Dissertations and Theses. Paper 861. https://doi.org/10.15760/etd.861 This Dissertation is brought to you for free and open access. It has been accepted for inclusion in Dissertations and Theses by an authorized administrator of PDXScholar. Please contact us if we can make this document more accessible: [email protected]. ISOLATIO[\ At\D CHAHACTERIZATIOi\ OF 1\'JO STEROLS FRON Tr-lE GREEi\ ALGA. SELENASTRL::I CAPRICORl\UTt.:~l by RA YNOND HARK O~\ Ii\GS A thesis submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in Ef\VIRONHEl\TAL SCIEI\CE-CHEtv1[STRY Portland State University 1976 Ai': ABSTRA.CT OF THE THESIS OF Raymond tvlark O\vings for the Doctor of Philosophy in Environmental Science-Chemistry presented August 4, 1975. Title: Isolation and Characterization of Two Sterols From the Green Alga, Selanastrum capricornutum. APPROVED BY NEivlBERS OF THE THESIS COHNITTEE: Karl Dittmer, Chairman Norman C. Rose Edward N. Perdue Dennis \V. Barnum Richard R. Petersen 2 The green alga, Selenastrum capricornutum, was cul tured in artificial nutrient medium utilizing five-gallon carboys, each of which contained 16 1. -
Evaluation of Certain Food Additives
952 Food Additives WHO Technical Report Series WHO Technical Sixty-ninth report of the FOOD ADDITIVES Joint FAO/WHO Expert Committee on Food and Agriculture Organization of the United Nations S I N A P T A F I EVALUATION OF CERTAIN EVALUATION OF CERTAIN FOOD ADDITIVES WHO Technical Report Series 952 ISBN 978 92 4 120952 6 2,3-trimethylbutyramide (No. 1595) and N, , phytosterols, phytostanols and their esters, , calcium lignosulfonate (40–65), ethyl lauroyl arginate, paprika Pichia pastoris A. niger -unsaturated aldehydes, acids and related alcohols, acetals and esters; β , α expressed in niger Aspergillus L-monomenthyl glutarate (No. 1414). recommendations for intakes and Annexed to the report are tables summarizing the Committee’s toxicological evaluations of the food additives considered. aliphatic secondary alcohols, ketones and related esters; alkoxy-substituted allylbenzenes present in foods and essential oils and used as flavouring agents; esters of aliphatic acyclic primary alcohols with aliphatic linear saturated carboxylic acids; furan-substituted aliphatic hydrocarbons, alcohols, aldehydes, ketones, carboxylic acids and related esters, sulfides, disulfides and ethers; miscellaneous nitrogen-containing substances; monocyclic and bicyclic secondary alcohols, ketones and related esters; hydroxy- and alkoxy-substituted benzyl derivatives; and substances structurally related to menthol). Specifications for the following food additives were revised: canthaxanthin; carob bean gum and carob bean gum (clarified); chlorophyllin copper -
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. New phylogenomic analysis of the enigmatic phylum Telonemia further resolves the eukaryote tree of life Jürgen F. H. Strassert1, Mahwash Jamy1, Alexander P. Mylnikov2, Denis V. Tikhonenkov2, Fabien Burki1,* 1Department of Organismal Biology, Program in Systematic Biology, Uppsala University, Uppsala, Sweden 2Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavl Region, Russia *Corresponding author: E-mail: [email protected] Keywords: TSAR, Telonemia, phylogenomics, eukaryotes, tree of life, protists bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The broad-scale tree of eukaryotes is constantly improving, but the evolutionary origin of several major groups remains unknown. Resolving the phylogenetic position of these ‘orphan’ groups is important, especially those that originated early in evolution, because they represent missing evolutionary links between established groups. Telonemia is one such orphan taxon for which little is known. The group is composed of molecularly diverse biflagellated protists, often prevalent although not abundant in aquatic environments. -
Genetic Tool Development in Marine Protists: Emerging Model Organisms for Experimental Cell Biology
RESOURCE https://doi.org/10.1038/s41592-020-0796-x Genetic tool development in marine protists: emerging model organisms for experimental cell biology Diverse microbial ecosystems underpin life in the sea. Among these microbes are many unicellular eukaryotes that span the diversity of the eukaryotic tree of life. However, genetic tractability has been limited to a few species, which do not represent eukaryotic diversity or environmentally relevant taxa. Here, we report on the development of genetic tools in a range of pro- tists primarily from marine environments. We present evidence for foreign DNA delivery and expression in 13 species never before transformed and for advancement of tools for eight other species, as well as potential reasons for why transformation of yet another 17 species tested was not achieved. Our resource in genetic manipulation will provide insights into the ancestral eukaryotic lifeforms, general eukaryote cell biology, protein diversification and the evolution of cellular pathways. he ocean represents the largest continuous planetary ecosys- Results tem, hosting an enormous variety of organisms, which include Overview of taxa in the EMS initiative. Taxa were selected from Tmicroscopic biota such as unicellular eukaryotes (protists). multiple eukaryotic supergroups1,7 to maximize the potential of cel- Despite their small size, protists play key roles in marine biogeo- lular biology and to evaluate the numerous unigenes with unknown chemical cycles and harbor tremendous evolutionary diversity1,2. functions found in marine protists (Fig. 1). Before the EMS initia- Notwithstanding their significance for understanding the evolution tive, reproducible transformation of marine protists was limited to of life on Earth and their role in marine food webs, as well as driv- only a few species such as Thalassiosira pseudonana, Phaeodactylum ing biogeochemical cycles to maintain habitability, little is known tricornutum and Ostreococcus tauri (Supplementary Table 1). -
The Ecology and Glycobiology of Prymnesium Parvum
The Ecology and Glycobiology of Prymnesium parvum Ben Adam Wagstaff This thesis is submitted in fulfilment of the requirements of the degree of Doctor of Philosophy at the University of East Anglia Department of Biological Chemistry John Innes Centre Norwich September 2017 ©This copy of the thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and that use of any information derived there from must be in accordance with current UK Copyright Law. In addition, any quotation or extract must include full attribution. Page | 1 Abstract Prymnesium parvum is a toxin-producing haptophyte that causes harmful algal blooms (HABs) globally, leading to large scale fish kills that have severe ecological and economic implications. A HAB on the Norfolk Broads, U.K, in 2015 caused the deaths of thousands of fish. Using optical microscopy and 16S rRNA gene sequencing of water samples, P. parvum was shown to dominate the microbial community during the fish-kill. Using liquid chromatography-mass spectrometry (LC-MS), the ladder-frame polyether prymnesin-B1 was detected in natural water samples for the first time. Furthermore, prymnesin-B1 was detected in the gill tissue of a deceased pike (Exos lucius) taken from the site of the bloom; clearing up literature doubt on the biologically relevant toxins and their targets. Using microscopy, natural P. parvum populations from Hickling Broad were shown to be infected by a virus during the fish-kill. A new species of lytic virus that infects P. parvum was subsequently isolated, Prymnesium parvum DNA virus (PpDNAV-BW1). -
Water Column Distribution and Carbon Isotopic Signal of Cholesterol
Water column distribution and carbon isotopic signal of cholesterol, brassicasterol and particulate organic carbon in the Atlantic sector of the Southern Ocean Anne-Julie Cavagna, Frank Dehairs, Steven Bouillon, V. Woule-Ebongué, Frédéric Planchon, Bruno Delille, Ioanna Bouloubassi To cite this version: Anne-Julie Cavagna, Frank Dehairs, Steven Bouillon, V. Woule-Ebongué, Frédéric Planchon, et al.. Water column distribution and carbon isotopic signal of cholesterol, brassicasterol and particulate organic carbon in the Atlantic sector of the Southern Ocean. Biogeosciences, European Geosciences Union, 2013, 10 (4), pp.2787-2801. 10.5194/bg-10-2787-2013. hal-00914348v2 HAL Id: hal-00914348 https://hal.archives-ouvertes.fr/hal-00914348v2 Submitted on 25 Apr 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License EGU Journal Logos (RGB) Open Access Open Access Open Access Advances in Annales Nonlinear Processes Geosciences Geophysicae in Geophysics Open Access Open Access Natural Hazards Natural Hazards and Earth System and Earth System Sciences Sciences Discussions Open Access Open Access Atmospheric Atmospheric Chemistry Chemistry and Physics and Physics Discussions Open Access Open Access Atmospheric Atmospheric Measurement Measurement Techniques Techniques Discussions Open Access Biogeosciences, 10, 2787–2801, 2013 Open Access www.biogeosciences.net/10/2787/2013/ Biogeosciences doi:10.5194/bg-10-2787-2013 Biogeosciences Discussions © Author(s) 2013. -
Cholesterol Homeostasis
FOR LIFE SCIENCE RESEARCH Volume 2 Number 7 Cholesterol Homeostasis ■ HMGR Assay Kit ■ Cholesterol Biosynthesis ■ Blocking Absorption of Dietary Cholesterol Hypercholesterolemia can lead to ■ Cholesterol Esterification the formation of plaques and the development of atherosclerosis. ■ Cholesterol Transport ■ Bile Acids Lipid Resource Sigma has now concentrated all its lipids and lipid related products into one easy-to-navigate location. Quickly find the specific lipids you need from over 2,000: ■ Fatty Acids ■ Sphingolipids ■ Glycerides ■ Prenols ■ Complex Lipids ■ Fluorescent Labeled Lipids ■ Oils ■ Analytical Standards ■ Bioactive Lipids Browse for lipids in cell signaling using our interactive pathway charts. Discover everything researchers need for lipid research at sigma.com/lipids. sigma-aldrich.com 1 Introduction Cholesterol is an essential biological molecule that performs many functions within the body. It is a structural component of all cell membranes and is also a precursor to steroid hormones, vitamin D, and bile acids that aid in digestion. Within membranes FOR LIFE SCIENCE RESEARCH the cholesterol to polar lipid ratios affect stability, permeability, and protein mobility. The hormones produced from cholesterol include androgens, estrogens, and the gluco- and 2007 mineralocorticoids. Volume 2 Cholesterol levels in the body are achieved via two sources. Adults with healthy diets will biosynthesize the majority of their cholesterol in the liver and other body tissues Number 7 and obtain the remainder from the dietary intake of foods high in saturated fatty acids. Free cholesterol is not found in blood; rather it is esterified to fatty acids and packaged in lipoprotein particles. Very low density lipoproteins (VLDL) are produced by Table of Contents the liver and consist of an outer core composed of apolipoproteins; apo-B100, apo-CI, apo-CII, apo-CIII, and apoE surrounding an inner core of phospholipids, triglycerides, cholesterol, and cholesteryl esters. -
Vanilla-Derived Ingredients As Used in Cosmetics
Safety Assessment of Vanilla-Derived Ingredients as Used in Cosmetics Status: Final Report Release Date: July 9, 2020 Panel Date: June 8-9, 2020 The Expert Panel for Cosmetic Ingredient Safety members are: Chair, Wilma F. Bergfeld, M.D., F.A.C.P.; Donald V. Belsito, M.D.; Curtis D. Klaassen, Ph.D.; Daniel C. Liebler, Ph.D.; James G. Marks, Jr., M.D.; Lisa A. Peterson, Ph.D.; Ronald C. Shank, Ph.D.; Thomas J. Slaga, Ph.D.; and Paul W. Snyder, D.V.M., Ph.D. The Cosmetic Ingredient Review (CIR) Executive Director is Bart Heldreth, Ph.D. This report was prepared by Wilbur Johnson, Jr., M.S., Senior Scientific Analyst, CIR. © Cosmetic Ingredient Review 1620 L STREET, NW, SUITE 1200 ◊ WASHINGTON, DC 20036-4702 ◊ PH 202.331.0651 ◊ FAX 202.331.0088 ◊ [email protected] ABSTRACT: The Expert Panel for Cosmetic Ingredient Safety (Panel) reviewed the safety of 9 vanilla-derived ingredients as used in cosmetics. These ingredients are reported to function mostly as skin conditioning agents in cosmetic products. Because final product formulations may contain multiple botanicals, each containing the same constituents of concern, formulators are advised to be aware of these constituents, and to avoid reaching levels that may be hazardous to consumers. Industry should continue to use good manufacturing practices to limit impurities. The Panel reviewed data relating to the safety of these ingredients and concluded that 7 ingredients are safe in cosmetics in the present practices of use and concentration when formulated to be non-sensitizing. The Panel further concluded that the available data are insufficient to make a determination of safety under the intended conditions of use in cosmetic formulations for Vanilla Planifolia Flower Extract and Vanilla Planifolia Leaf Cell Extract.