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Critical Evaluation of Gene Expression Changes in Human Tissues In
Review Critical Evaluation of Gene Expression Changes in Human Tissues in Response to Supplementation with Dietary Bioactive Compounds: Moving Towards Better-Quality Studies Biljana Pokimica 1 and María-Teresa García-Conesa 2,* 1 Center of Research Excellence in Nutrition and Metabolism, Institute for Medical Research, University of Belgrade, Belgrade 11000, Serbia; [email protected] 2 Research Group on Quality, Safety and Bioactivity of Plant Foods, Campus de Espinardo, Centro de Edafologia y Biologia Aplicada del Segura-Consejo Superior de Investigaciones Científicas (CEBAS-CSIC), P.O. Box 164, 30100 Murcia, Spain * Correspondence: [email protected]; Tel.: +34-968-396276 Received: 4 June 2018; Accepted: 19 June 2018; Published: 22 June 2018 Abstract: Pre-clinical cell and animal nutrigenomic studies have long suggested the modulation of the transcription of multiple gene targets in cells and tissues as a potential molecular mechanism of action underlying the beneficial effects attributed to plant-derived bioactive compounds. To try to demonstrate these molecular effects in humans, a considerable number of clinical trials have now explored the changes in the expression levels of selected genes in various human cell and tissue samples following intervention with different dietary sources of bioactive compounds. In this review, we have compiled a total of 75 human studies exploring gene expression changes using quantitative reverse transcription PCR (RT-qPCR). We have critically appraised the study design and methodology used as well as the gene expression results reported. We herein pinpoint some of the main drawbacks and gaps in the experimental strategies applied, as well as the high interindividual variability of the results and the limited evidence supporting some of the investigated genes as potential responsive targets. -
A Natural Antimicrobial Ingredient
Mustard: A Natural Antimicrobial Ingredient Did you know? Mustard has natural antimicrobial properties, the bioactive compounds ‐ glucosinolates in mustard, are converted to the antimicrobial isothiocyanates in the presence of water Natural preservative functionality of mustard can be very valuable to the food industry Mustard isothiocyanates can effect up to a 5‐log reduction of E. coli 0157:H7 in fermented meats Mustard Essential Oils (MEO) can be added to bakery products to inhibit fungal growth and production of aflatoxins Glucosinolates from deheated / deodorized (bland) mustard can be converted into highly antimicrobial isothiocyanate by bacterial myrosinase‐like enzyme action present in E. coli, 0157:H7, Staphylococcus carnosus and Pediococcus pentosaceus11,12,13 and in L. monocytogenes, Enterococcus faecalis, Staphylococcus aureus and Salmonella typhimurium Mustard’s inherent antimicrobial properties should fit well with the food industry’s growing interest and increasing consumer demand for the use of a natural preservative to enhance food safety and increase shelf‐life of prepared packaged foods with a “clean label” claim. Mustards in Foods Mustards (Yellow and Brown) are commercially available as whole seeds, ground/cracked seeds, meals or flour forms and are widely used in the manufacture of condiments, salad dressings, pickles, sauces, processed meats and as substitutes for egg ingredients. While mainly used as a spice or for its functional properties, mustard can also provide raw and processed foods protection against pathogenic and spoilage microorganisms. Antimicrobial Bioactives in Mustard All mustards, Yellow (& White) (Sinapis alba) and Brown/Oriental (Brassica juncea), contain glucosinolates. It is these glucosinolates and their isothiocyanate (ITC) breakdown products which contribute to its natural antimicrobial activity and to the heat and pungency of mustard. -
Soil Mobility of Allyl Isothiocyanate and Chloropicrin As Influenced By
HORTSCIENCE 54(4):706–714. 2019. https://doi.org/10.21273/HORTSCI13836-18 and some soil arthropods, but it provides little control of fungi and weeds, whereas Met-Na controls weeds, nematodes, and some fungi. CP Soil Mobility of Allyl Isothiocyanate controls insects and fungi, but it has less activity against nematodes and weeds (Ajwa and Trout, and Chloropicrin as Influenced by 2004). The most promising MeBr alternatives are chloropicrin and Met-Na (Gao et al., 2012; Surfactants and Soil Texture Jacoby, 2016; Klose et al., 2008; Yates et al., 2002); therefore, more than 7000 tons of chlo- Feras Almasri ropicrin were used in 2011 (Nelson et al., 2013) Department of Plant Sciences, University of California at Davis, Davis, CA in California. 95616 Although Met-Na is an effective fumigant (Nelson et al., 2002), the use of Met-Na is Husein A. Ajwa strongly regulated due to the excessive soil fu- Department of Plant Sciences, University of California at Davis, 1636 East migant release into the atmosphere (Goodhue et al., 2016; Saeed et al., 1997). Because of Alisal Street, Salinas, CA 93905 this excessive release into the atmosphere, Sanjai J. Parikh Met-Na, Met-K, and DMTT labels require wide buffer zones and specific measures to University of California at Davis, Department of Land, Air and Water protect people from off-target movement Resources, Davis, CA 95616 (Guthman and Brown, 2016). Furthermore, 1 Met-Na, Met-K, and DMTT degrade in soil Kassim Al-Khatib to MITC, which is classified as a toxicity I Department of Plant Sciences, University of California at Davis, Davis, CA category pesticide (Gao et al., 2012; Klose 95616 et al., 2008). -
Isothiocyanates; Sources, Physiological Functions and Food Applications
1 Plant Archives Vol. 20, Supplement 2, 2020 pp. 2758-2763 e-ISSN:2581-6063 (online), ISSN:0972-5210 ISOTHIOCYANATES; SOURCES, PHYSIOLOGICAL FUNCTIONS AND FOOD APPLICATIONS Mudasir Yaqoob* 1,2 , Poonam Aggarwal 2, Mukul Kumar 1, Neha Purandare 1 1Department of Food Technology and Nutrition, Lovely professional University Phagwara India 2Department of Food Science &Technology Punjab agriculture University Ludhiana Email: [email protected] Abstract Foods are complex mixture of major and minor nutrients. They also contain some non-nutrient mixtures which exert beneficial effects to the human body known as phytochemicals. Phytochemicals are the chemical compounds that are synthesised by the plant cells to fight any kind of stress conditions. Isothiocyanates (ITCs) are the secondary metabolites produced by the plant from the enzymatic hydrolysis of glucosinolates by myrosinase during the plant tissue injury. They are present in Cruciferous vegetables, such as cabbage, broccoli and kale and are sulphur rich compounds. Isothiocyanates have been found to play an important role for the plant against microbial and pest infections. ITCs have been found to have beneficial activities like antibacterial, antifungal, bioherbicidal, and antioxidant, biopesticidal, anticarcinogenic and antimutagenic. Due to these activities they are having applications in food preservation like fruit juices and as an additive in Mayonnaise. Their recent application has been in the food packing’s and in MAP. The present review gives the insight of these phytochemicals, their physiological functions and food applications Keywords : Isothiocyanates, glucosionolate, sources, biocidal, food applications. Introduction in the vapour phase (Isshiki et al., 1992) and due to this characteristic property, it has been able to be used as food Isothiocyanates are the type of phytochemicals that are preservative in a number of foods stuffs. -
THE Glucosinolates & Cyanogenic Glycosides
THE Glucosinolates & Cyanogenic Glycosides Assimilatory Sulphate Reduction - Animals depend on organo-sulphur - In contrast, plants and other organisms (e.g. fungi, bacteria) can assimilate it - Sulphate is assimilated from the environment, reduced inside the cell, and fixed to sulphur containing amino acids and other organic compounds Assimilatory Sulphate Reduction The Glucosinolates The Glucosinolates - Found in the Capparales order and are the main secondary metabolites in cruciferous crops The Glucosinolates - The glucosinolates are a class of organic compounds (water soluble anions) that contain sulfur, nitrogen and a group derived from glucose - Every glucosinolate contains a central carbon atom which is bond via a sulfur atom to the glycone group, and via a nitrogen atom to a sulfonated oxime group. In addition, the central carbon is bond to a side group; different glucosinolates have different side groups The Glucosinolates Central carbon atom The Glucosinolates - About 120 different glucosinolates are known to occur naturally in plants. - They are synthesized from certain amino acids: methionine, phenylalanine, tyrosine or tryptophan. - The plants contain the enzyme myrosinase which, in the presence of water, cleaves off the glucose group from a glucosinolate The Glucosinolates -Post myrosinase activity the remaining molecule then quickly converts to a thiocyanate, an isothiocyanate or a nitrile; these are the active substances that serve as defense for the plant - To prevent damage to the plant itself, the myrosinase and glucosinolates -
Isothiocyanates from Cruciferous Vegetables
Isothiocyanates from Cruciferous Vegetables: Kinetics, Biomarkers and Effects Martijn Vermeulen Promotoren Prof. dr. Peter J. van Bladeren Hoogleraar Toxicokinetiek en Biotransformatie, leerstoelgroep Toxicologie, Wageningen Universiteit Prof. dr. ir. Ivonne M.C.M. Rietjens Hoogleraar Toxicologie, Wageningen Universiteit Copromotor Dr. Wouter H.J. Vaes Productmanager Nutriënten en Biomarker analyse, TNO Kwaliteit van Leven, Zeist Promotiecommissie Prof. dr. Aalt Bast Universiteit Maastricht Prof. dr. ir. M.A.J.S. (Tiny) van Boekel Wageningen Universiteit Prof. dr. Renger Witkamp Wageningen Universiteit Prof. dr. Ruud A. Woutersen Wageningen Universiteit / TNO, Zeist Dit onderzoek is uitgevoerd binnen de onderzoeksschool VLAG (Voeding, Levensmiddelen- technologie, Agrobiotechnologie en Gezondheid) Isothiocyanates from Cruciferous Vegetables: Kinetics, Biomarkers and Effects Martijn Vermeulen Proefschrift ter verkrijging van de graad van doctor op gezag van de rector magnificus van Wageningen Universiteit, prof. dr. M.J. Kropff, in het openbaar te verdedigen op vrijdag 13 februari 2009 des namiddags te half twee in de Aula. Title Isothiocyanates from cruciferous vegetables: kinetics, biomarkers and effects Author Martijn Vermeulen Thesis Wageningen University, Wageningen, The Netherlands (2009) with abstract-with references-with summary in Dutch ISBN 978-90-8585-312-1 ABSTRACT Cruciferous vegetables like cabbages, broccoli, mustard and cress, have been reported to be beneficial for human health. They contain glucosinolates, which are hydrolysed into isothiocyanates that have shown anticarcinogenic properties in animal experiments. To study the bioavailability, kinetics and effects of isothiocyanates from cruciferous vegetables, biomarkers of exposure and for selected beneficial effects were developed and validated. As a biomarker for intake and bioavailability, isothiocyanate mercapturic acids were chemically synthesised as reference compounds and a method for their quantification in urine was developed. -
PYK10 Myrosinase Reveals a Functional Coordination Between Endoplasmic Reticulum Bodies and Glucosinolates in Arabidopsis Thaliana
The Plant Journal (2017) 89, 204–220 doi: 10.1111/tpj.13377 PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana Ryohei T. Nakano1,2,3, Mariola Pislewska-Bednarek 4, Kenji Yamada5,†, Patrick P. Edger6,‡, Mado Miyahara3,§, Maki Kondo5, Christoph Bottcher€ 7,¶, Masashi Mori8, Mikio Nishimura5, Paul Schulze-Lefert1,2,*, Ikuko Hara-Nishimura3,*,#,k and Paweł Bednarek4,*,# 1Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linne-Weg 10, D-50829 Koln,€ Germany, 2Cluster of Excellence on Plant Sciences (CEPLAS), Max Planck Institute for Plant Breeding Research, Carl-von-Linne-Weg 10, D-50829 Koln,€ Germany, 3Department of Botany, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, 4Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 12/14, 61-704 Poznan, Poland, 5Department of Cell Biology, National Institute of Basic Biology, Okazaki 444-8585, Japan, 6Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA, 7Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, D-06120 Halle (Saale), Germany, and 8Ishikawa Prefectural University, Nonoichi, Ishikawa 834-1213, Japan Received 29 March 2016; revised 30 August 2016; accepted 5 September 2016; published online 19 December 2016. *For correspondence (e-mails [email protected]; [email protected]; [email protected]). #These authors contributed equally to this work. †Present address: Malopolska Centre of Biotechnology, Jagiellonian University, 30-387 Krakow, Poland. ‡Present address: Department of Horticulture, Michigan State University, East Lansing, MI, USA. §Present address: Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo 113-0033, Japan. -
Opposing Effects of Glucosinolates on a Specialist Herbivore and Its Predators
Journal of Applied Ecology 2011, 48, 880–887 doi: 10.1111/j.1365-2664.2011.01990.x Chemically mediated tritrophic interactions: opposing effects of glucosinolates on a specialist herbivore and its predators Rebecca Chaplin-Kramer1*, Daniel J. Kliebenstein2, Andrea Chiem3, Elizabeth Morrill1, Nicholas J. Mills1 and Claire Kremen1 1Department of Environmental Science Policy & Management, University of California, Berkeley, 130 Mulford Hall #3114, Berkeley, CA 94720, USA; 2Department of Plant Sciences, University of California, Davis, One Shields Ave., Davis, CA 95616, USA; and 3Department of Integrative Biology, University of California, Berkeley, 3060 Valley Life Sciences Bldg #3140, Berkeley, CA 94720, USA Summary 1. The occurrence of enemy-free space presents a challenge to the top-down control of agricultural pests by natural enemies, making bottom-up factors such as phytochemistry and plant distributions important considerations for successful pest management. Specialist herbivores like the cabbage aphid Brevicoryne brassicae co-opt the defence system of plants in the family Brassicaceae by sequestering glucosinolates to utilize in their own defence. The wild mustard Brassica nigra,analter- nate host for cabbage aphids, contains more glucosinolates than cultivated Brassica oleracea,and these co-occur in agricultural landscapes. We examined trade-offs between aphid performance and predator impact on these two host plants to test for chemically mediated enemy-free space. 2. Glucosinolate content of broccoli B. oleracea and mustard B. nigra was measured in plant mat- ter and in cabbage aphids feeding on each food source. Aphid development, aphid fecundity, preda- tion and predator mortality, and field densities of aphids and their natural enemies were also tested for each food source. -
Molecular Mechanisms of Fibroblast Growth Factor Signaling in Physiology and Pathology
Downloaded from http://cshperspectives.cshlp.org/ on September 28, 2021 - Published by Cold Spring Harbor Laboratory Press Molecular Mechanisms of Fibroblast Growth Factor Signaling in Physiology and Pathology Artur A. Belov and Moosa Mohammadi Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, New York 10016 Correspondence: [email protected] Fibroblast growth factors (FGFs) signal in a paracrine or endocrine fashion to mediate a myriad of biological activities, ranging from issuing developmental cues, maintaining tissue homeostasis, and regulating metabolic processes. FGFs carry out their diverse func- tions by binding and dimerizing FGF receptors (FGFRs) in a heparan sulfate (HS) cofactor- or Klotho coreceptor-assisted manner. The accumulated wealth of structural and biophysical data in the past decade has transformed our understanding of the mechanism of FGF signal- ing in human health and development, and has provided novel concepts in receptor tyrosine kinase (RTK) signaling. Among these contributions are the elucidation of HS-assisted recep- tor dimerization, delineation of the molecular determinants of ligand–receptor specificity, tyrosine kinase regulation, receptor cis-autoinhibition, and tyrosine trans-autophosphoryla- tion. These structural studies have also revealed how disease-associated mutations highjack the physiological mechanisms of FGFR regulation to contribute to human diseases. In this paper, we will discuss the structurally and biophysically derived mechanisms of FGF signal- ing, and how the insights gained may guide the development of therapies for treatment of a diverse array of human diseases. ibroblast growth factor (FGF) signaling ful- (Goldfarb 1996; Kato and Sekine 1999; Sekine Ffills essential roles in metazoan development et al. -
An Introduction to Nutrition and Metabolism, 3Rd Edition
INTRODUCTION TO NUTRITION AND METABOLISM INTRODUCTION TO NUTRITION AND METABOLISM third edition DAVID A BENDER Senior Lecturer in Biochemistry University College London First published 2002 by Taylor & Francis 11 New Fetter Lane, London EC4P 4EE Simultaneously published in the USA and Canada by Taylor & Francis Inc 29 West 35th Street, New York, NY 10001 Taylor & Francis is an imprint of the Taylor & Francis Group This edition published in the Taylor & Francis e-Library, 2004. © 2002 David A Bender All rights reserved. No part of this book may be reprinted or reproduced or utilised in any form or by any electronic, mechanical, or other means, now known or hereafter invented, including photocopying and recording, or in any information storage or retrieval system, without permission in writing from the publishers. British Library Cataloguing in Publication Data A catalogue record for this book is available from the British Library Library of Congress Cataloging in Publication Data Bender, David A. Introduction to nutrition and metabolism/David A. Bender.–3rd ed. p. cm. Includes bibliographical references and index. 1. Nutrition. 2. Metabolism. I. Title. QP141 .B38 2002 612.3′9–dc21 2001052290 ISBN 0-203-36154-7 Master e-book ISBN ISBN 0-203-37411-8 (Adobe eReader Format) ISBN 0–415–25798–0 (hbk) ISBN 0–415–25799–9 (pbk) Contents Preface viii Additional resources x chapter 1 Why eat? 1 1.1 The need for energy 2 1.2 Metabolic fuels 4 1.3 Hunger and appetite 6 chapter 2Enzymes and metabolic pathways 15 2.1 Chemical reactions: breaking and -
Federal Register/Vol. 84, No. 230/Friday, November 29, 2019
Federal Register / Vol. 84, No. 230 / Friday, November 29, 2019 / Proposed Rules 65739 are operated by a government LIBRARY OF CONGRESS 49966 (Sept. 24, 2019). The Office overseeing a population below 50,000. solicited public comments on a broad Of the impacts we estimate accruing U.S. Copyright Office range of subjects concerning the to grantees or eligible entities, all are administration of the new blanket voluntary and related mostly to an 37 CFR Part 210 compulsory license for digital uses of increase in the number of applications [Docket No. 2019–5] musical works that was created by the prepared and submitted annually for MMA, including regulations regarding competitive grant competitions. Music Modernization Act Implementing notices of license, notices of nonblanket Therefore, we do not believe that the Regulations for the Blanket License for activity, usage reports and adjustments, proposed priorities would significantly Digital Uses and Mechanical Licensing information to be included in the impact small entities beyond the Collective: Extension of Comment mechanical licensing collective’s potential for increasing the likelihood of Period database, database usability, their applying for, and receiving, interoperability, and usage restrictions, competitive grants from the Department. AGENCY: U.S. Copyright Office, Library and the handling of confidential of Congress. information. Paperwork Reduction Act ACTION: Notification of inquiry; To ensure that members of the public The proposed priorities do not extension of comment period. have sufficient time to respond, and to contain any information collection ensure that the Office has the benefit of SUMMARY: The U.S. Copyright Office is requirements. a complete record, the Office is extending the deadline for the extending the deadline for the Intergovernmental Review: This submission of written reply comments program is subject to Executive Order submission of written reply comments in response to its September 24, 2019 to no later than 5:00 p.m. -
DNA Damage, Repair and Mutational Spectrum
University of Rhode Island DigitalCommons@URI Open Access Dissertations 2019 DNA damage, repair and mutational spectrum Ke Bian University of Rhode Island, [email protected] Follow this and additional works at: https://digitalcommons.uri.edu/oa_diss Recommended Citation Bian, Ke, "DNA damage, repair and mutational spectrum" (2019). Open Access Dissertations. Paper 850. https://digitalcommons.uri.edu/oa_diss/850 This Dissertation is brought to you for free and open access by DigitalCommons@URI. It has been accepted for inclusion in Open Access Dissertations by an authorized administrator of DigitalCommons@URI. For more information, please contact [email protected]. DNA DAMAGE, REPAIR, AND MUTATIONAL SPECTRUM BY KE BIAN A DISSERTATION SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN PHARMACEUTICAL SCIENCES UNIVERSITY OF RHODE ISLAND 2019 DOCTOR OF PHILOSOPHY DISSERTATION OF KE BIAN APPROVED: Dissertation Committee: Major Professor Deyu Li Bongsup Cho Gongqin Sun Nasser H. Zawia DEAN OF THE GRADUATE SCHOOL UNIVERSITY OF RHODE ISLAND 2019 ABSTRACT The integrity and stability of DNA is essential to life since it stores genetic information in every living cell. Chemicals from the environment will assault DNA to form various types of DNA damage, ranging from small covalent crosslinks between neighboring DNA bases as seen in cyclobutane pyrimidine dimers, to big bulky adducts derived from benzo[a]pyrene. This resultant damage will lead to replication block and mutation if remain unrepaired and will eventually cause cancer or other genetic diseases. The work presented in this dissertation has illustrated the important role of the AlkB family DNA repair enzymes in cancer and Wilson’s Disease.