bioRxiv preprint doi: https://doi.org/10.1101/110296; this version posted February 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Léveillé-Bourret et al. 2016 Anchored phylogenomics resolves plant radiation Resolving Rapid Radiations Within Families Using Anchored Phylogenomics 5 Étienne Léveillé-Bourret1,*, Julian R. Starr1, Bruce A. Ford2, Emily Moriarty Lemmon3, Alan R. Lemmon4 1Department of Biology, University of Ottawa, K1N 6N5, Ottawa, Ontario, Canada. 2Department of Biological Sciences, University of Manitoba, R3T 2N2, Winnipeg, Manitoba, Canada. 10 3Department of Biological Science, Florida State University, Tallahassee, Florida 32306, United States. 4Department of Scientific Computing, Florida State University, Tallahassee, Florida 32306, United States. *Corresponding author. E-mail:
[email protected] 15 1/52 bioRxiv preprint doi: https://doi.org/10.1101/110296; this version posted February 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Léveillé-Bourret et al. 2016 Anchored phylogenomics resolves plant radiation Abstract. – Despite the promise that molecular data would provide a seemingly unlimited source of independent characters, many plant phylogenetic studies are based on only two regions, the plastid genome and nuclear ribosomal DNA (nrDNA). Their popularity can be explained by high copy numbers and universal PCR primers that make their sequences easily amplified and 20 converted into parallel datasets. Unfortunately, their utility is limited by linked loci and limited characters resulting in low confidence in the accuracy of phylogenetic estimates, especially when rapid radiations occur.