Lafora Disease — from Pathogenesis to Treatment Strategies
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Analyses of Allele-Specific Gene Expression in Highly Divergent
ARTICLES Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance James J Crowley1,10, Vasyl Zhabotynsky1,10, Wei Sun1,2,10, Shunping Huang3, Isa Kemal Pakatci3, Yunjung Kim1, Jeremy R Wang3, Andrew P Morgan1,4,5, John D Calaway1,4,5, David L Aylor1,9, Zaining Yun1, Timothy A Bell1,4,5, Ryan J Buus1,4,5, Mark E Calaway1,4,5, John P Didion1,4,5, Terry J Gooch1,4,5, Stephanie D Hansen1,4,5, Nashiya N Robinson1,4,5, Ginger D Shaw1,4,5, Jason S Spence1, Corey R Quackenbush1, Cordelia J Barrick1, Randal J Nonneman1, Kyungsu Kim2, James Xenakis2, Yuying Xie1, William Valdar1,4, Alan B Lenarcic1, Wei Wang3,9, Catherine E Welsh3, Chen-Ping Fu3, Zhaojun Zhang3, James Holt3, Zhishan Guo3, David W Threadgill6, Lisa M Tarantino7, Darla R Miller1,4,5, Fei Zou2,11, Leonard McMillan3,11, Patrick F Sullivan1,5,7,8,11 & Fernando Pardo-Manuel de Villena1,4,5,11 Complex human traits are influenced by variation in regulatory DNA through mechanisms that are not fully understood. Because regulatory elements are conserved between humans and mice, a thorough annotation of cis regulatory variants in mice could aid in further characterizing these mechanisms. Here we provide a detailed portrait of mouse gene expression across multiple tissues in a three-way diallel. Greater than 80% of mouse genes have cis regulatory variation. Effects from these variants influence complex traits and usually extend to the human ortholog. Further, we estimate that at least one in every thousand SNPs creates a cis regulatory effect. -
Partial Deletion of Chromosome 6P Causing Developmental Delay and Mild Dysmorphisms in a Child
Vrachnis et al. Mol Cytogenet (2021) 14:39 https://doi.org/10.1186/s13039-021-00557-y CASE REPORT Open Access Partial deletion of chromosome 6p causing developmental delay and mild dysmorphisms in a child: molecular and developmental investigation and literature search Nikolaos Vrachnis1,2,3* , Ioannis Papoulidis4, Dionysios Vrachnis5, Elisavet Siomou4, Nikolaos Antonakopoulos1,2, Stavroula Oikonomou6, Dimitrios Zygouris2, Nikolaos Loukas7, Zoi Iliodromiti8, Efterpi Pavlidou9, Loretta Thomaidis6 and Emmanouil Manolakos4 Abstract Background: The interstitial 6p22.3 deletions concern rare chromosomal events afecting numerous aspects of both physical and mental development. The syndrome is characterized by partial deletion of chromosome 6, which may arise in a number of ways. Case presentation: We report a 2.8-year old boy presenting with developmental delay and mild dysmorphisms. High-resolution oligonucleotide microarray analysis revealed with high precision a 2.5 Mb interstitial 6p deletion in the 6p22.3 region which encompasses 13 genes. Conclusions: Identifcation and in-depth analysis of cases presenting with mild features of the syndrome will sharpen our understanding of the genetic spectrum of the 6p22.3 deletion. Keywords: 6p22.3 deletion, Syndrome, Developmental delay, Intellectual disability, Dysmorphism, Behavioral abnormalities, High-resolution microarray analysis Background dysmorphic features, and structural organ defects, as well Te interstitial deletion of chromosomal region 6p22.3 as intellectual disability. is a rare condition with variable phenotypic expression. We report herein a case of interstitial deletion of chro- To date, more than 30 children and adolescents with this mosome 6p investigated by array-CGH in a 2.8-year old deletion have been reported [1–11]. -
Lafora Disease: Molecular Etiology Lafora Hastalığı: Moleküler Etiyoloji S
Epilepsi 2018;24(1):1-7 DOI: 10.14744/epilepsi.2017.48278 REVIEW / DERLEME Lafora Disease: Molecular Etiology Lafora Hastalığı: Moleküler Etiyoloji S. Hande ÇAĞLAYAN1,2 1Department of Molecular Biology and Genetics, Boğaziçi University, İstanbul, Turkey S. Hande CAĞLAYAN, Ph.D. 2International Biomedicine and Genome Center, Dokuz Eylül University, İzmir, Turkey Summary Lafora Disease (LD) is a fatal neurodegenerative condition characterized by the accumulation of abnormal glycogen inclusions known as Lafora bodies (LBs). Patients with LD manifest myoclonus and tonic-clonic seizures, visual hallucinations, and progressive neurological deteri- oration beginning at the age of 8-18 years. Mutations in either EPM2A gene encoding protein phosphatase laforin or NHLRC1 gene encoding ubiquitin-ligase malin cause LD. Approximately, 200 distinct mutations accounting for the disease are listed in the Lafora progressive my- oclonus epilepsy mutation and polymorphism database. In this review, the genotype-phenotype correlations, the genetic diagnosis of LD, the downregulation of glycogen metabolism as the main cause of LD pathogenesis and the regulation of glycogen synthesis as a key target for the treatment of LD are discussed. Key words: EPM2A and NHLRC1 gene mutations; genotype-phenotype relationship; Lafora progressive myoclonus epilepsy; LD pathogenesis. Özet Lafora hastalığı (LD) Lafora cisimleri (LB) olarak bilinen anormal glikojen yapıların birikmesi ile karakterize olan ölümcül bir nörodejeneratif hastalıktır. Lafora hastalarında 8–18 yaş arası başlayan miyoklonik ve tonik-klonik nöbetler, halüsinasyonlar ve ilerleyen nörolojik bozulma görülür. Lafora hastalığı protein fosfataz laforini kodlayan EPM2A geni veya ubikitin ligaz malini kodlayan NHLRC1 geni mutasyonları ile orta- ya çıkar. Hastalığa sebep olan yaklaşık 200 farklı mutasyon “Lafora Progressive Myoclonus Epilepsy Mutation and Polymorphism Database” de listelenmiştir. -
ILAE Classification and Definition of Epilepsy Syndromes with Onset in Childhood: Position Paper by the ILAE Task Force on Nosology and Definitions
ILAE Classification and Definition of Epilepsy Syndromes with Onset in Childhood: Position Paper by the ILAE Task Force on Nosology and Definitions N Specchio1, EC Wirrell2*, IE Scheffer3, R Nabbout4, K Riney5, P Samia6, SM Zuberi7, JM Wilmshurst8, E Yozawitz9, R Pressler10, E Hirsch11, S Wiebe12, JH Cross13, P Tinuper14, S Auvin15 1. Rare and Complex Epilepsy Unit, Department of Neuroscience, Bambino Gesu’ Children’s Hospital, IRCCS, Member of European Reference Network EpiCARE, Rome, Italy 2. Divisions of Child and Adolescent Neurology and Epilepsy, Department of Neurology, Mayo Clinic, Rochester MN, USA. 3. University of Melbourne, Austin Health and Royal Children’s Hospital, Florey Institute, Murdoch Children’s Research Institute, Melbourne, Australia. 4. Reference Centre for Rare Epilepsies, Department of Pediatric Neurology, Necker–Enfants Malades Hospital, APHP, Member of European Reference Network EpiCARE, Institut Imagine, INSERM, UMR 1163, Université de Paris, Paris, France. 5. Neurosciences Unit, Queensland Children's Hospital, South Brisbane, Queensland, Australia. Faculty of Medicine, University of Queensland, Queensland, Australia. 6. Department of Paediatrics and Child Health, Aga Khan University, East Africa. 7. Paediatric Neurosciences Research Group, Royal Hospital for Children & Institute of Health & Wellbeing, University of Glasgow, Member of European Refence Network EpiCARE, Glasgow, UK. 8. Department of Paediatric Neurology, Red Cross War Memorial Children’s Hospital, Neuroscience Institute, University of Cape Town, South Africa. 9. Isabelle Rapin Division of Child Neurology of the Saul R Korey Department of Neurology, Montefiore Medical Center, Bronx, NY USA. 10. Programme of Developmental Neurosciences, UCL NIHR BRC Great Ormond Street Institute of Child Health, Department of Clinical Neurophysiology, Great Ormond Street Hospital for Children, London, UK 11. -
Mutations in the NHLRC1 Gene Are the Common Cause for Lafora Disease in the Japanese Population
J Hum Genet (2005) 50:347–352 DOI 10.1007/s10038-005-0263-7 ORIGINAL ARTICLE Shweta Singh Æ Toshimitsu Suzuki Æ Akira Uchiyama Satoko Kumada Æ Nobuko Moriyama Æ Shinichi Hirose Yukitoshi Takahashi Æ Hideo Sugie Æ Koichi Mizoguchi Yushi Inoue Æ Kazue Kimura Æ Yukio Sawaishi Kazuhiro Yamakawa Æ Subramaniam Ganesh Mutations in the NHLRC1 gene are the common cause for Lafora disease in the Japanese population Received: 11 March 2005 / Accepted: 30 May 2005 / Published online: 15 July 2005 Ó The Japan Society of Human Genetics and Springer-Verlag 2005 Abstract Lafora disease (LD) is a rare autosomal NHLRC1 and encoding a putative E3 ubiquitin ligase, recessive genetic disorder characterized by epilepsy, was recently identified on chromosome 6p22. The LD is myoclonus, and progressive neurological deterioration. relatively common in southern Europe, the Middle East, LD is caused by mutations in the EMP2A gene encoding and Southeast Asia. A few sporadic cases with typical a protein phosphatase. A second gene for LD, termed LD phenotype have been reported from Japan; however, our earlier study failed to find EPM2A mutations in four Japanese families with LD. We recruited four new fam- S. Singh Æ S. Ganesh Department of Biological Sciences and Bioengineering, ilies from Japan and searched for mutations in EPM2A. Indian Institute of Technology, All eight families were also screened for NHLRC1 Kanpur, India mutations. We found five independent families having T. Suzuki Æ K. Yamakawa (&) novel mutations in NHLRC1. Identified mutations in- Laboratory for Neurogenetics, clude five missense mutations (p.I153M, p.C160R, RIKEN Brain Science Institute, 2-1, Hirosawa, Wako, p.W219R, p.D245N, and p.R253K) and a deletion Saitama 351-0198, Japan mutation (c.897insA; p.S299fs13). -
Lafora Disease Masquerading As Hepatic Dysfunction
Thomas Jefferson University Jefferson Digital Commons Abington Jefferson Health Papers Abington Jefferson Health 8-24-2018 Lafora Disease Masquerading as Hepatic Dysfunction Faisal Inayat Allama Iqbal Medical College Waqas Ullah Abington Jefferson Health Hanan T. Lodhi University of Nebraska at Omaha Zarak H. Khan St. Mary Mercy Hospital Livonia Ghulam Ilyas SUNY Downstate Medical Center Follow this and additional works at: https://jdc.jefferson.edu/abingtonfp See next page for additional authors Part of the Gastroenterology Commons, and the Medical Genetics Commons Let us know how access to this document benefits ouy Recommended Citation Inayat, Faisal; Ullah, Waqas; Lodhi, Hanan T.; Khan, Zarak H.; Ilyas, Ghulam; Ali, Nouman Safdar; and Abdullah, Hafez Mohammad A., "Lafora Disease Masquerading as Hepatic Dysfunction" (2018). Abington Jefferson Health Papers. Paper 7. https://jdc.jefferson.edu/abingtonfp/7 This Article is brought to you for free and open access by the Jefferson Digital Commons. The Jefferson Digital Commons is a service of Thomas Jefferson University's Center for Teaching and Learning (CTL). The Commons is a showcase for Jefferson books and journals, peer-reviewed scholarly publications, unique historical collections from the University archives, and teaching tools. The Jefferson Digital Commons allows researchers and interested readers anywhere in the world to learn about and keep up to date with Jefferson scholarship. This article has been accepted for inclusion in Abington Jefferson Health Papers by an authorized administrator of the Jefferson Digital Commons. For more information, please contact: [email protected]. Authors Faisal Inayat, Waqas Ullah, Hanan T. Lodhi, Zarak H. Khan, Ghulam Ilyas, Nouman Safdar Ali, and Hafez Mohammad A. -
TFG Luque Gimeno.Pdf
D I A G N O S I S A N D S Y M P T O M A T O L O G Y O F L A F O R A ’ S D I S E A S E F I N A L D E G R E E P R O J E C T - J U N E 2 0 1 9 Main area: Physiology and physiopathology Secondary areas: Biochemistry and Public Health P A U L A L U Q U E G I M E N O Facultat de Farmàcia i Ciències de l’Alimentació Universitat de Barcelona (UB) This work is licenced under a Creative Commons license CONTENTS: 1. Acronyms……………………………………………………………………………….…page 0 2. Abstract ……………………………………………………………………………………page 1 3. Integration of the different scopes…………………………………………………… page 2 4. Introduction……………………………………………………………………………….page 3 4.1. Progressive myoclonic epilepsies……………………………………………… page 3 4.2. Lafora Disease (LD) ………………………………………………………………...page 3 4.2.1. Why is it so unknown? …………………………………………………….page 4 4.2.2. Nowadays: Actual treatments and research strategies………………page 5 5. Objectives..………………………………………………………………………………..page 7 6. Materials and methods…………………………………………………………………..page 8 7. Results and discussion…………………………………………………………………page 9 7.1. Lafora Bodies (LBs) formation and distribution……………………………....page 9 7.2. Signs and symptoms………………………………………….…………………..page 11 7.2.1. Presenting symptoms…………………………………………………….page 11 7.2.2. Clinical course………………………………………….……………….…page 13 7.2.3. Prognosis and evolution of phenotypic hetero- and homogeneity.page 14 7.2.4. Fatal consequences………………………………………….……………page 15 7.3. Diagnostic methods………………………………………….……………………page 16 7.3.1. Differential diagnosis based on types of PMEs………………………page 16 7.3.2. -
Autophagy and Neurodegeneration: Pathogenic Mechanisms and Therapeutic Opportunities
1 Autophagy and neurodegeneration: Pathogenic mechanisms and therapeutic opportunities Fiona M Menzies1ǂ,#, Angeleen Fleming1ǂ, Andrea Caricasole2ǂ, Carla F Bento1ǂ, Steven P Andrews2ǂ, Avraham Ashkenazi1ǂ, Jens Füllgrabe1ǂ, Anne Jackson1ǂ, Maria Jimenez Sanchez1ǂ, Cansu Karabiyik1ǂ, Floriana Licitra1ǂ, Ana Lopez Ramirez1ǂ, Mariana Pavel1ǂ, Claudia Puri1ǂ, Maurizio Renna1ǂ, Thomas Ricketts1ǂ Lars Schlotawa1ǂ, Mariella Vicinanza1ǂ, Hyeran Won1ǂ, Ye Zhu1ǂ, John Skidmore2ǂ and David C Rubinsztein1* 1 Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge School of Clinical Medicine, Wellcome Trust/MRC Building, Cambridge Biomedical Campus, Hills Road, Cambridge, CB2 0XY, UK. 2 Alzheimer's Research UK Cambridge Drug Discovery Institute, University of Cambridge, Cambridge Biomedical Campus, Hills Road, Cambridge, CB2 0AH, UK. # Current address: Eli Lilly and Company Limited, Erl Wood Manor, Sunninghill Road Windlesham, Surrey, GU20 6PH, UK. ǂDenotes equal contribution *E-mail address for correspondence: [email protected] (DCR) 2 In Brief This review discusses the importance of autophagy function for brain health, outlining connections between autophagy dysfunction and neurodegenerative disorders. The potential for autophagy as a therapeutic strategy for neurodegenerative disease is discussed, along with how this may be achieved. Summary Autophagy is a conserved pathway that delivers cytoplasmic contents to the lysosome for degradation. Here we consider its roles in neuronal health and disease. We review evidence from mouse knock-out studies demonstrating the normal functions of autophagy as a protective factor against neurodegeneration associated with intracytoplasmic aggregate-prone protein accumulation, as well as other roles including in neuronal stem cell differentiation. We then describe how autophagy may be affected in a range of neurodegenerative diseases. -
Comprehensive Analysis of Copy Number and Allele Status Identifies Multiple Chromosome Defects Underlying Follicular Lymphoma Pathogenesis Charles W
Human Cancer Biology Comprehensive Analysis of Copy Number and Allele Status Identifies Multiple Chromosome Defects Underlying Follicular Lymphoma Pathogenesis Charles W. Ross,2 Peter D. Ouillette,1Chris M. Saddler,1Kerby A. Shedden,3 andSamiN.Malek1 Abstract Purpose: Follicular lymphoma (FL) constitutes the second most common non-Hodgkin’s lym- phoma in the Western world. The clinical course is variable and only in part explained by known tumor-intrinsic or -extrinsic factors. FL carries the hallmarkchromosomal translocation t(14;18), deregulating the expression of Bcl-2, but this is not sufficient to explain either FL biology or clin- ical behavior. Experimental Design: We have employed high-density genomic profiling technology using the Affymetrix 50K-XbaI oligonucleotide single nucleotide polymorphism ^ chip platform to interro- gate the genomes of 58 fluorescence-activated cell ^ sorted (FACS) FL specimens for chromo- somal copy number changes and 46 specimens for loss of heterozygosity (LOH). Results: We report (a) previously unknown high-frequency copy-neutral LOH (uniparental dis- omy) in FL on chromosomes1p(f50%)and6p(f30%);(b) that del6q is complex, as reported, with at least two regions of minimal common loss at 6q13-15 and 6q23-24, and that in addition, f8% of FL specimens contain a homozygous deletion at 6q23.3-24.1that spans the negative NFnBregulatorA20 and the p53 apoptosis effector PERP ;(c) that combined analysis of chro- mosome17p for LOH, copy number, and p53 mutations shows that most p53 mutationsinFLdo not involve del17p. Finally, we map high-frequency LOH with and without copy loss on chromo- somes 9p, 10q, and 16p and genomic gains on 2p15-16 and 8q24.22-24.3. -
Mouse Nhlrc1 Knockout Project (CRISPR/Cas9)
https://www.alphaknockout.com Mouse Nhlrc1 Knockout Project (CRISPR/Cas9) Objective: To create a Nhlrc1 knockout Mouse model (C57BL/6J) by CRISPR/Cas-mediated genome engineering. Strategy summary: The Nhlrc1 gene (NCBI Reference Sequence: NM_175340 ; Ensembl: ENSMUSG00000044231 ) is located on Mouse chromosome 13. 1 exon is identified, with the ATG start codon in exon 1 and the TGA stop codon in exon 1 (Transcript: ENSMUST00000052747). Exon 1 will be selected as target site. Cas9 and gRNA will be co-injected into fertilized eggs for KO Mouse production. The pups will be genotyped by PCR followed by sequencing analysis. Note: Mice homozygous for a knock-out allele exhibit accumulation of Lafora bodies and total glycogen levels in the heart muscle, skeletal muscle, and brain. Exon 1 starts from about 0.08% of the coding region. Exon 1 covers 100.0% of the coding region. The size of effective KO region: ~1201 bp. The KO region does not have any other known gene. Page 1 of 8 https://www.alphaknockout.com Overview of the Targeting Strategy Wildtype allele 5' gRNA region gRNA region 3' 1 Legends Exon of mouse Nhlrc1 Knockout region Page 2 of 8 https://www.alphaknockout.com Overview of the Dot Plot (up) Window size: 15 bp Forward Reverse Complement Sequence 12 Note: The 2000 bp section upstream of start codon is aligned with itself to determine if there are tandem repeats. No significant tandem repeat is found in the dot plot matrix. So this region is suitable for PCR screening or sequencing analysis. Overview of the Dot Plot (down) Window size: 15 bp Forward Reverse Complement Sequence 12 Note: The 2000 bp section downstream of stop codon is aligned with itself to determine if there are tandem repeats. -
Types of Photic-Induced Seizures and Epileptic Types Associated With
SEIZURE DISORDERS EPILEPTIC SYNDROMES AND PHOTOSENSITIVE SEIZURES The clinical features of different types of photic-induced seizures and epileptic syndromes characterized by visual sensitivity are reviewed from the University of Pisa, Italy, and Centre St Paul, Marseille, France. Seizure types associated with clinical photosensitivity include eyelid myoclonus, generalized myoclonic jerks, tonic-versive seizures, absence, generalized tonic clonic, and focal seizures. Epileptic syndromes with photic-induced seizures include benign myoclonic epilepsy in infancy, absence epilepsy, juvenile myoclonic epilepsy, epilepsy with myoclonic-astatic seizures, primary reading epilepsy, severe myoclonic epilepsy of infancy, photosensitive occipital lobe epilepsy, and progressive myoclonus epilepsies (PME). PME with photic sensitivity are symptoms of neuronal ceroid lipofuscinosis, Lafora's disease, Unverricht-Lundborg disease, and myoclonus epilepsy and ragged red fibers (MERRF). Visually induced seizures can be generalized or focal, idiopathic or symptomatic, or represent a pure reflex photosensitive epilepsy. (Guerrini R, Genton P. Epileptic syndromes and visually induced seizures. Epilepsia January 2004;45 (Suppl 1): 14- 18). (Reprints: Dr R Guerrini, Division of Child Neurology and Psychiatry, University of Pisa & IRCCS Fondazione Stella Maris, via dei Giacinti 2, 56018 Calambrone, Pisa, Italy). COMMENT. The treatment of photosensitive epilepsies involves preventive measures and antiepileptic medications (AED). (Covanis A et al. Epilepsia Jan 2004;45(Suppl l):40-45; Bureau M et al. Epilepsia Jan 2004;45(Suppl l):24-26). Preventive measures include the following: avoid stimuli (eg TV, videogames); use small TV, 100-Hz screen, remote control, sit >2 m away from screen, wear spectacles, avoid stress and fatigue. Usually a combination of avoidance of stimuli and an AED is necessary. -
Relation of Photosensitivity to Epileptic Syndromes
J Neurol Neurosurg Psychiatry: first published as 10.1136/jnnp.49.12.1386 on 1 December 1986. Downloaded from Journal of Neurology, Neurosurgery, and Psychiatry 1986;49:1386-1391 Relation of photosensitivity to epileptic syndromes P WOLF,* R GOOSSES Abteilungfiir Neurologie, Klinikum Charlottenburg der Freien Universitdt, Berlin, Federal Republic ofGermany SUMMARY Photosensitivity is the most common mode of seizure precipitation. It is age-related, more frequent in females, and most often found in generalised epilepsies. Little is known about its relation to individual epileptic syndromes. This study on 1062 epileptic patients who had 4007 split screen video EEG investigations revealed that the relation to generalised epilepsy is even more close than generally believed. Versive seizures with visual hallucinations was the only focal seizure type related to photosensitivity. Of the syndromes of generalised epilepsy, only childhood absence epi- lepsy, juvenile myoclonic epilepsy, and epilepsy with grand mal on awakening were related to photosensitivity. The closest correlation was with juvenile myoclonic epilepsy. This is confirmed by a relation to the poly-spike wave pattern, and by an increase of myoclonic seizures by intermittent light stimuli. No relation was found with early childhood syndromes of generalised epilepsy, or generalised tonic-clonic seizures in the evening, or, most remarkably, with juvenile absence epilepsy. guest. Protected by copyright. In generalised epilepsies with onset around puberty, photosensitivity could thus act as a patho- plastic factor. The female preponderance in both childhood absences and photosensitivity could be due to the same unknown factor. Photosensitivity does not necessarily signify epi- of increasing and decreasing frequency from 3 to 30 Hz were lepsy.' In connection with epilepsy, photosensitivity applied.