Manual on Field Recording Techniques and Protocols for All Taxa Biodiversity Inventories (Atbis), Part 1
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Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
DNR Letterhead
ATU F N RA O L T R N E E S M O T U STATE OF MICHIGAN R R C A P DNR E E S D MI N DEPARTMENT OF NATURAL RESOURCES CHIG A JENNIFER M. GRANHOLM LANSING REBECCA A. HUMPHRIES GOVERNOR DIRECTOR Michigan Frog and Toad Survey 2009 Data Summary There were 759 unique sites surveyed in Zone 1, 218 in Zone 2, 20 in Zone 3, and 100 in Zone 4, for a total of 1097 sites statewide. This is a slight decrease from the number of sites statewide surveyed last year. Zone 3 (the eastern half of the Upper Peninsula) is significantly declining in routes. Recruiting in that area has become necessary. A few of the species (i.e. Fowler’s toad, Blanchard’s cricket frog, and mink frog) have ranges that include only a portion of the state. As was done in previous years, only data from those sites within the native range of those species were used in analyses. A calling index of abundance of 0, 1, 2, or 3 (less abundant to more abundant) is assigned for each species at each site. Calling indices were averaged for a particular species for each zone (Tables 1-4). This will vary widely and cannot be considered a good estimate of abundance. Calling varies greatly with weather conditions. Calling indices will also vary between observers. Results from the evaluation of methods and data quality showed that volunteers were very reliable in their abilities to identify species by their calls, but there was variability in abundance estimation (Genet and Sargent 2003). -
Order HARPACTICOIDA Manual Versión Española
Revista IDE@ - SEA, nº 91B (30-06-2015): 1–12. ISSN 2386-7183 1 Ibero Diversidad Entomológica @ccesible www.sea-entomologia.org/IDE@ Class: Maxillopoda: Copepoda Order HARPACTICOIDA Manual Versión española CLASS MAXILLOPODA: SUBCLASS COPEPODA: Order Harpacticoida Maria José Caramujo CE3C – Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal. [email protected] 1. Brief definition of the group and main diagnosing characters The Harpacticoida is one of the orders of the subclass Copepoda, and includes mainly free-living epibenthic aquatic organisms, although many species have successfully exploited other habitats, including semi-terrestial habitats and have established symbiotic relationships with other metazoans. Harpacticoids have a size range between 0.2 and 2.5 mm and have a podoplean morphology. This morphology is char- acterized by a body formed by several articulated segments, metameres or somites that form two separate regions; the anterior prosome and the posterior urosome. The division between the urosome and prosome may be present as a constriction in the more cylindric shaped harpacticoid families (e.g. Ectinosomatidae) or may be very pronounced in other familes (e.g. Tisbidae). The adults retain the central eye of the larval stages, with the exception of some underground species that lack visual organs. The harpacticoids have shorter first antennae, and relatively wider urosome than the copepods from other orders. The basic body plan of harpacticoids is more adapted to life in the benthic environment than in the pelagic environment i.e. they are more vermiform in shape than other copepods. Harpacticoida is a very diverse group of copepods both in terms of morphological diversity and in the species-richness of some of the families. -
Slime Moulds
Queen’s University Biological Station Species List: Slime Molds The current list has been compiled by Richard Aaron, a naturalist and educator from Toronto, who has been running the Fabulous Fall Fungi workshop at QUBS between 2009 and 2019. Dr. Ivy Schoepf, QUBS Research Coordinator, edited the list in 2020 to include full taxonomy and information regarding species’ status using resources from The Natural Heritage Information Centre (April 2018) and The IUCN Red List of Threatened Species (February 2018); iNaturalist and GBIF. Contact Ivy to report any errors, omissions and/or new sightings. Based on the aforementioned criteria we can expect to find a total of 33 species of slime molds (kingdom: Protozoa, phylum: Mycetozoa) present at QUBS. Species are Figure 1. One of the most commonly encountered reported using their full taxonomy; common slime mold at QUBS is the Dog Vomit Slime Mold (Fuligo septica). Slime molds are unique in the way name and status, based on whether the species is that they do not have cell walls. Unlike fungi, they of global or provincial concern (see Table 1 for also phagocytose their food before they digest it. details). All species are considered QUBS Photo courtesy of Mark Conboy. residents unless otherwise stated. Table 1. Status classification reported for the amphibians of QUBS. Global status based on IUCN Red List of Threatened Species rankings. Provincial status based on Ontario Natural Heritage Information Centre SRank. Global Status Provincial Status Extinct (EX) Presumed Extirpated (SX) Extinct in the -
Zootaxa 1368: 57–68 (2006) ISSN 1175-5326 (Print Edition) ZOOTAXA 1368 Copyright © 2006 Magnolia Press ISSN 1175-5334 (Online Edition)
Zootaxa 1368: 57–68 (2006) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 1368 Copyright © 2006 Magnolia Press ISSN 1175-5334 (online edition) A new species of Parastenocaris from Mindoro Island, Philippines: Parastenocaris distincta sp. nov. (Crustacea: Copepoda: Harpacticoida: Parastenocarididae) VEZIO COTTARELLI, MARIA CRISTINA BRUNO* & RAFFAELLA BERERA Department of Environmental Sciences, “della Tuscia” University, Largo dell’Università snc, Viterbo, 01100 Italy *Corresponding author. E-mail: [email protected] Abstract A new species of harpacticoid, Parastenocaris distincta sp. nov., is described and discussed. The new species was collected in a freshwater interstitial habitat near the mouth of a river in Western Mindoro Province, the Philippines. This is the second species of Parastenocaris described from this country. The medial ornamentation of P1 basis, the morphology of male P3 and the number and distribution of the integumental pores in the new species differ from those previously reported in other species of Parastenocaris. We review and discuss the more common arrangements of these features in recently described species, emphasizing the taxonomic discriminative value of their variations. Key words: Parastenocaris, Philippines, interstitial habitat, Harpacticoida, groundwater Introduction The harpacticoid family Parastenocarididae Chappuis is composed of seven genera: Parastenocaris Kessler, Forficatocaris Jakobi, Paraforficatocaris Jakobi, Remaneicaris Jakobi, Potamocaris Dussart, Murunducaris Reid, Simplicaris Galassi and De Laurentiis. All of them are exclusive to freshwater subterranean waters, Paraforficatocaris, Forficatocaris, Potamocaris, and Murunducaris are neotropical with a more or less limited distribution, Remaneicaris is neotropical with a wide distribution (Corgosinho & Martínez Arbizou 2005), Simplicaris has very restricted distribution being known only for Central Italy (Galassi & De Laurentiis 2004; Ruffo and Stoch 2005). -
Slime Molds: Biology and Diversity
Glime, J. M. 2019. Slime Molds: Biology and Diversity. Chapt. 3-1. In: Glime, J. M. Bryophyte Ecology. Volume 2. Bryological 3-1-1 Interaction. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 18 July 2020 and available at <https://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 3-1 SLIME MOLDS: BIOLOGY AND DIVERSITY TABLE OF CONTENTS What are Slime Molds? ....................................................................................................................................... 3-1-2 Identification Difficulties ...................................................................................................................................... 3-1- Reproduction and Colonization ........................................................................................................................... 3-1-5 General Life Cycle ....................................................................................................................................... 3-1-6 Seasonal Changes ......................................................................................................................................... 3-1-7 Environmental Stimuli ............................................................................................................................... 3-1-13 Light .................................................................................................................................................... 3-1-13 pH and Volatile Substances -
A Comparative Study of Zoospore Cytoskeleton in Symphytocarpus Impexus, Arcyria Cinerea and Lycogala Epidendrum (Eumycetozoa)
Protistology 3 (1), 1529 (2003) Protistology A comparative study of zoospore cytoskeleton in Symphytocarpus impexus, Arcyria cinerea and Lycogala epidendrum (Eumycetozoa) Serguei A. Karpov1, Yuri K. Novozhilov2 and Ludmila V. Chistiakova3 1 Biological and Soil Science Faculty of St. Petersburg State University, St. Petersburg, Russia, 2 Komarov Botanical Institute, Russian Academy of Sciences, St. Petersburg, Russia, 3 Biological Research Institute of St. Petersburg State University, St. Petersburg, Russia Summary The ultrastructure of zoospores of the myxogastrids Symphytocarpus impexus B. Ing et Nann.Bremek. (Stemoniida), Arcyria cinerea (Bull.) Pers. (Trichiida), and Lycogala epidendrum (L.) Fr. (Liceida) is reported for the first time, with special reference to flagellar apparatus. The cytoskeleton in all three species includes microtubular and fibrillar rootlets arising from both basal bodies of the flagellar apparatus. There is a similarity in the presence and position of the rootlets N15 between our species and other studied species of myxogastrids and protostelids. Thus, general conservatism of cytoskeletal characters and homology among eumycetozoa have been confirmed for these taxa. At the same time there is variation in the details of flagellar rootlets’ structure in different orders and genera. The differences concern the shape of short striated fibre (SSF) which is an organizing structure for microtubular rootlets r2, r3 and r4. Its upper strand is more prominent in L. epidendrum. The fibrillar part of rootlet 1 is connected to basal body 1 in S. impexus, to basal body 2 in A. cinerea, and to both basal bodies in L. epidendrum. The rootlets r4 and r5 are very conservative and consist, correspondigly, of 7 and 2 microtubules in all three species. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Boreal Toad (Bufo Boreas Boreas) a Technical Conservation Assessment
Boreal Toad (Bufo boreas boreas) A Technical Conservation Assessment Prepared for the USDA Forest Service, Rocky Mountain Region, Species Conservation Project May 25, 2005 Doug Keinath1 and Matt McGee1 with assistance from Lauren Livo2 1Wyoming Natural Diversity Database, P.O. Box 3381, Laramie, WY 82071 2EPO Biology, P.O. Box 0334, University of Colorado, Boulder, CO 80309 Peer Review Administered by Society for Conservation Biology Keinath, D. and M. McGee. (2005, May 25). Boreal Toad (Bufo boreas boreas): a technical conservation assessment. [Online]. USDA Forest Service, Rocky Mountain Region. Available: http://www.fs.fed.us/r2/projects/scp/ assessments/borealtoad.pdf [date of access]. ACKNOWLEDGMENTS The authors would like to thank Deb Patla and Erin Muths for their suggestions during the preparation of this assessment. Also, many thanks go to Lauren Livo for advice and help with revising early drafts of this assessment. Thanks to Jason Bennet and Tessa Dutcher for assistance in preparing boreal toad location data for mapping. Thanks to Bill Turner for information and advice on amphibians in Wyoming. Finally, thanks to the Boreal Toad Recovery Team for continuing their efforts to conserve the boreal toad and documenting that effort to the best of their abilities … kudos! AUTHORS’ BIOGRAPHIES Doug Keinath is the Zoology Program Manager for the Wyoming Natural Diversity Database, which is a research unit of the University of Wyoming and a member of the Natural Heritage Network. He has been researching Wyoming’s wildlife for the past nine years and has 11 years experience in conducting technical and policy analyses for resource management professionals. -
Crustacea, Copepoda, Harpacticoida) from Western Australia
DOI: 10.18195/issn.0312-3162.22(4).2005.353-374 Records ofthe Western Australian Museum 22: 353-374 (2005). Two new subterranean Parastenocarididae (Crustacea, Copepoda, Harpacticoida) from Western Australia T. Karanovic Western Australian Museum, Locked Bag 49, Welshpool DC, Western Australia 6986, Australia E-mail: [email protected] Abstract - Two new species of the genus Parastenocaris Kessler, 1913 are described from Australian subterranean waters, both based upon males and females. Parastenocaris eberhardi sp. novo has been found in two small caves in southwestern Western Australia. It belongs to the "minuta"-group of species, having five large spinules at base of the fourth leg endopod in male. The integumental window pattern of P. eberhardi is the same as for the first reported Australian representative (P. solitaria), which helps to establish its affinities too, since only females of the latter species were described. Parastenocaris eberhardi has a clear Eastern Gondwana connection, like many other Australian copepods of freshwater origins. Parastenocaris kimberleyensis sp. novo is described from a single water-monitoring bore in the Kimberley district, northeastern Western Australia. It belongs to the "brevipes"-group of species, for which a key to world species is given. The present state of systematics within the family Parastenocarididae is briefly discussed. INTRODUCTION almost exclusively freshwater in distribution Until relatively recently the groundwater fauna of (Boxshall and Jaume 2000) and has six well Australia was very poorly known (Marrnonier et al. recognized genera: Parastenocaris Kessler, 1913; 1993), and that mostly from the investigation of Forficatocaris Jakobi, 1969; Paraforficatocaris Jakobi, cave faunas in the eastern portion of the continent 1972; Potamocaris Dussart, 1979; Murunducaris Reid, (Thurgate et al. -
Volume 2, Chapter 10-1: Arthropods: Crustacea
Glime, J. M. 2017. Arthropods: Crustacea – Copepoda and Cladocera. Chapt. 10-1. In: Glime, J. M. Bryophyte Ecology. Volume 2. 10-1-1 Bryological Interaction. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 19 July 2020 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology2/>. CHAPTER 10-1 ARTHROPODS: CRUSTACEA – COPEPODA AND CLADOCERA TABLE OF CONTENTS SUBPHYLUM CRUSTACEA ......................................................................................................................... 10-1-2 Reproduction .............................................................................................................................................. 10-1-3 Dispersal .................................................................................................................................................... 10-1-3 Habitat Fragmentation ................................................................................................................................ 10-1-3 Habitat Importance ..................................................................................................................................... 10-1-3 Terrestrial ............................................................................................................................................ 10-1-3 Peatlands ............................................................................................................................................. 10-1-4 Springs ............................................................................................................................................... -
CORINA Classic Program Manual
CORINA Classic Generation of Three-Dimensional Molecular Models Version 4.4.0 Program Description Molecular Networks GmbH September 2021 www.mn-am.com Molecular Networks GmbH Altamira LLC Neumeyerstraße 28 470 W Broad St, Unit #5007 90411 Nuremberg Columbus, OH 43215 Germany USA mn-am.com This document is copyright © 1998-2021 by Molecular Networks GmbH Computerchemie and Altamira LLC. All rights reserved. Except as permitted under the terms of the Software Licensing Agreement of Molecular Networks GmbH Computerchemie, no part of this publication may be reproduced or distributed in any form or by any means or stored in a database retrieval system without the prior written permission of Molecular Networks GmbH or Altamira LLC. The software described in this document is furnished under a license and may be used and copied only in accordance with the terms of such license. (Document version: 4.4.0-2021-09-30) Content Content 1 Introducing CORINA Classic 1 1.1 Objective of CORINA Classic 1 1.2 CORINA Classic in Brief 1 2 Release Notes 3 2.1 CORINA (Full Version) 3 2.2 CORINA_F (Restricted FlexX Interface Version) 25 3 Getting Started with CORINA Classic 26 4 Using CORINA Classic 29 4.1 Synopsis 29 4.2 Options 29 5 Use Cases of CORINA Classic 60 6 Supported File Formats and Interfaces 64 6.1 V2000 Structure Data File (SD) and Reaction Data File (RD) 64 6.2 V3000 Structure Data File (SD) and Reaction Data File (RD) 67 6.3 SMILES Linear Notation 67 6.4 InChI file format 69 6.5 SYBYL File Formats 70 6.6 Brookhaven Protein Data Bank Format (PDB)