Bacillus Spp.: Attractive Sources of Anti-Cancer and Anti-Proliferative Biomolecules
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Bacillus Safensis FO-36B and Bacillus Pumilus SAFR-032: a Whole Genome Comparison of Two Spacecraft Assembly Facility Isolates
bioRxiv preprint doi: https://doi.org/10.1101/283937; this version posted April 24, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: A Whole Genome 2 Comparison of Two Spacecraft Assembly Facility Isolates 3 Madhan R Tirumalai1, Victor G. Stepanov1, Andrea Wünsche1, Saied Montazari1, 4 Racquel O. Gonzalez1, Kasturi Venkateswaran2, George. E. Fox1§ 5 1Department of Biology and Biochemistry, University of Houston, Houston, TX, 77204-5001. 6 2 Biotechnology & Planetary Protection Group, NASA Jet Propulsion Laboratories, California 7 Institute of Technology, Pasadena, CA, 91109. 8 9 §Corresponding author: 10 Dr. George E. Fox 11 Dept. Biology & Biochemistry 12 University of Houston, Houston, TX 77204-5001 13 713-743-8363; 713-743-8351 (FAX); email: [email protected] 14 15 Email addresses: 16 MRT: [email protected] 17 VGS: [email protected] 18 AW: [email protected] 19 SM: [email protected] 20 ROG: [email protected] 21 KV: [email protected] 22 GEF: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/283937; this version posted April 24, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 23 Keywords: Planetary protection, Bacillus endospores, extreme radiation resistance, peroxide 24 resistance, genome comparison, phage insertions 25 26 Background 27 Microbial persistence in built environments such as spacecraft cleanroom facilities [1-3] is often 28 characterized by their unusual resistances to different physical and chemical factors [1, 4-7]. -
Novel Bacterial Strains Pseudomonas Sp. and Bacillus Sp. Isolated from Petroleum Oil Contaminated Soils for Degradation of Flourene and Phenanthrene
Pollution, 5(3): 657-669, Summer 2019 DOI: 10.22059/poll.2019.274084.571 Print ISSN: 2383-451X Online ISSN: 2383-4501 Web Page: https://jpoll.ut.ac.ir, Email: [email protected] Novel Bacterial Strains Pseudomonas sp. and Bacillus sp. Isolated from Petroleum Oil Contaminated Soils for Degradation of Flourene and Phenanthrene Bharti, V., Gupta, B. and Kaur, J.* UIET, Biotechnology Branch, Panjab University, Chandigarh, P.O. Box 160014, India. Received: 16.01.2019 Accepted: 10.04.2019 ABSTRACT: Flourene and phenanthrene are organic compounds with high hydrophobicity and toxicity. Being recalcitrant in nature they are accumulating in the environment at an alarming concentration, posing serious threat to living beings. Thus in the present study, microorganisms were screened for their ability to degrade these contaminants at high concentrations in least period of time. Two out of fifteen isolates screened showed growth in basal medium containing 25 mg/l of fluorene/phenanthrene as the only carbon source. These selected isolates were acclimatised with step wise increased concentrations of flourene/phenanthrene for 165 days in basal medium. The acclimatised strains were identified and characterised on the basis of their morphological and biochemical characteristics and 16S rRNA gene sequence analysis. Results showed close relatedness of the isolates to Pseudomonas aeruginosa sp. and Bacillus safensis sp. Biodegradation studies carried out with these acclimatised strains at optimum conditions (pH 7 and temperature 30°C) showed 62.44% degradation of fluorene and 54.21% of phenanthrene in 10 days by Pseudomonas sp. VB92, whereas, Bacillus sp. JK17 degraded 43.64% of fluorene and 59.91% of phenanthrene in 12 days, at an initial concentration of 200 mg/l, as determined by HPTLC. -
Characterisation of Bacteria Isolated from the Stingless Bee, Heterotrigona Itama, Honey, Bee Bread and Propolis
Characterisation of bacteria isolated from the stingless bee, Heterotrigona itama, honey, bee bread and propolis Mohamad Syazwan Ngalimat1,2,*, Raja Noor Zaliha Raja Abd. Rahman1,2, Mohd Termizi Yusof2, Amir Syahir1,3 and Suriana Sabri1,2,* 1 Enzyme and Microbial Technology Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor, Malaysia 2 Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor, Malaysia 3 Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor, Malaysia * These authors contributed equally to this work. ABSTRACT Bacteria are present in stingless bee nest products. However, detailed information on their characteristics is scarce. Thus, this study aims to investigate the characteristics of bacterial species isolated from Malaysian stingless bee, Heterotrigona itama, nest products. Honey, bee bread and propolis were collected aseptically from four geographical localities of Malaysia. Total plate count (TPC), bacterial identification, phenotypic profile and enzymatic and antibacterial activities were studied. The results indicated that the number of TPC varies from one location to another. A total of 41 different bacterial isolates from the phyla Firmicutes, Proteobacteria and Actinobacteria were identified. Bacillus species were the major bacteria found. Therein, Bacillus cereus was the most frequently isolated species followed by -
Unraveling the Underlying Heavy Metal Detoxification Mechanisms Of
microorganisms Review Unraveling the Underlying Heavy Metal Detoxification Mechanisms of Bacillus Species Badriyah Shadid Alotaibi 1, Maryam Khan 2 and Saba Shamim 2,* 1 Department of Pharmaceutical Sciences, College of Pharmacy, Princess Nourah Bint Abdulrahman University, Riyadh 11671, Saudi Arabia; [email protected] 2 Institute of Molecular Biology and Biotechnology (IMBB), Defence Road Campus, The University of Lahore, Lahore 55150, Pakistan; [email protected] * Correspondence: [email protected] Abstract: The rise of anthropogenic activities has resulted in the increasing release of various contaminants into the environment, jeopardizing fragile ecosystems in the process. Heavy metals are one of the major pollutants that contribute to the escalating problem of environmental pollution, being primarily introduced in sensitive ecological habitats through industrial effluents, wastewater, as well as sewage of various industries. Where heavy metals like zinc, copper, manganese, and nickel serve key roles in regulating different biological processes in living systems, many heavy metals can be toxic even at low concentrations, such as mercury, arsenic, cadmium, chromium, and lead, and can accumulate in intricate food chains resulting in health concerns. Over the years, many physical and chemical methods of heavy metal removal have essentially been investigated, but their disadvantages like the generation of chemical waste, complex downstream processing, and the uneconomical cost of both methods, have rendered them inefficient,. Since then, microbial bioremediation, particularly the Citation: Alotaibi, B.S.; Khan, M.; use of bacteria, has gained attention due to the feasibility and efficiency of using them in removing Shamim, S. Unraveling the heavy metals from contaminated environments. Bacteria have several methods of processing heavy Underlying Heavy Metal metals through general resistance mechanisms, biosorption, adsorption, and efflux mechanisms. -
Klaus Et Al., 1997
UC Davis UC Davis Previously Published Works Title Growth of 48 built environment bacterial isolates on board the International Space Station (ISS). Permalink https://escholarship.org/uc/item/3sw238hb Journal PeerJ, 4(3) ISSN 2167-8359 Authors Coil, David A Neches, Russell Y Lang, Jenna M et al. Publication Date 2016 DOI 10.7717/peerj.1842 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Growth of 48 built environment bacterial isolates on board the International Space Station (ISS) David A. Coil1, Russell Y. Neches1, Jenna M. Lang1, Wendy E. Brown1,2, Mark Severance2,3, Darlene Cavalier2,3 and Jonathan A. Eisen1,4,5 1 Genome Center, University of California, Davis, CA, United States 2 Science Cheerleader, Philadelphia, PA, United States 3 SciStarter.com, Philadelphia, PA, United States 4 Department of Medical Microbiology and Immunology, University of California, Davis, CA, United States 5 Department of Evolution and Ecology, University of California, Davis, CA, United States ABSTRACT Background. While significant attention has been paid to the potential risk of pathogenic microbes aboard crewed spacecraft, the non-pathogenic microbes in these habitats have received less consideration. Preliminary work has demonstrated that the interior of the International Space Station (ISS) has a microbial community resembling those of built environments on Earth. Here we report the results of sending 48 bacterial strains, collected from built environments on Earth, for a growth experiment on the ISS. This project was a component of Project MERCCURI (Microbial Ecology Research Combining Citizen and University Researchers on ISS). Results. Of the 48 strains sent to the ISS, 45 of them showed similar growth in space and on Earth using a relative growth measurement adapted for microgravity. -
Bacillus Pumilus Group Comparative Genomics: Toward Pangenome Features, Diversity, and Marine Environmental Adaptation
fmicb-12-571212 May 7, 2021 Time: 11:31 # 1 ORIGINAL RESEARCH published: 07 May 2021 doi: 10.3389/fmicb.2021.571212 Bacillus pumilus Group Comparative Genomics: Toward Pangenome Features, Diversity, and Marine Environmental Adaptation Xiaoteng Fu1,2,3, Linfeng Gong1,2,3, Yang Liu5, Qiliang Lai1,2,3, Guangyu Li1,2,3 and Zongze Shao1,2,3,4* 1 Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, China, 2 State Key Laboratory Breeding Base of Marine Genetic Resources, Xiamen, China, 3 Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen, China, 4 Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai, China, 5 State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Open Laboratory of Applied Microbiology, Guangdong Microbial Culture Collection Center (GDMCC), Guangdong Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China Edited by: John R. Battista, Background: Members of the Bacillus pumilus group (abbreviated as the Bp group) are Louisiana State University, United States quite diverse and ubiquitous in marine environments, but little is known about correlation Reviewed by: with their terrestrial counterparts. In this study, 16 marine strains that we had isolated Martín Espariz, before were sequenced and comparative genome analyses were performed with a Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), total of 52 Bp group strains. The analyses included 20 marine isolates (which included Instituto de Biología Molecular y the 16 new strains) and 32 terrestrial isolates, and their evolutionary relationships, Celular de Rosario (IBR), Argentina differentiation, and environmental adaptation. -
In Vitro Degradation of Polycyclic Aromatic Hydrocarbons by Sphingobium Xenophagum, Bacillus Pumilus and Pseudomonas Plecoglossicida
J. Bio. & Env. Sci. 2015 Journal of Biodiversity and Environmental Sciences (JBES) ISSN: 2220-6663 (Print) 2222-3045 (Online) Vol. 6, No. 4, p. 246-259, 2015 http://www.innspub.net RESEARCH PAPER OPEN ACCESS In vitro degradation of polycyclic aromatic hydrocarbons by Sphingobium xenophagum, Bacillus pumilus and Pseudomonas plecoglossicida Imaneh Amini1*, Arezoo Tahmourespour2, Atousa Abdollahi3, Mansour Bayat4 1Department of Microbiology, Islamic Azad University, Falavarjan Branch, Falavarjan, Isfahan, Iran 2Department of Basic Medical Sciences, Islamic Azad University, Khorasgan (Isfahan) Branch, Isfahan, Iran 3Department of Basic Sciences, Islamic Azad University, Khorasgan (Isfahan) Branch, Isfahan, Iran 4Department of Medical and Veterinary Mycology, Faculty of Veterinary Specialized Sciences, Science and Research Branch, Islamic Azad University, Tehran, Iran Article published on April 21, 2015 Key words: Polycyclic aromatic hydrocarbons; Biodegradation; Sphingobium xenophagum; Bacillus pumilus; Pseudomonas plecoglossicida. Abstract Polycyclic aromatic hydrocarbons are a class of organic compounds with carcinogenic and genotoxic properties. Biodegradation of such pollutants using microorganisms, especially bacteria, would be a cheap and environmentally safe clean up method. In the present study, a total of 30 anthracene, phenanthrene and pyrene degrading bacteria were isolated from two petroleum contaminated soils in Isfahan-Iran using enrichment technique. Three isolates, showing the highest growth and the lowest pH in their media, were considered as the best hydrocarbon degraders. These isolates were identified to be Sphingobium xenophagum ATAI16, Bacillus pumilus ATAI17 and Pseudomonas plecoglossicida ATAI18 using 16S rDNA gene sequences analyses, and were submitted to GenBank under accession number of KF040087, KF040088 and KF113842, respectively. They were able to degrade 43.31% of phenanthrene, 56.94% of anthracene and 45.32% of pyrene after 9 days, respectively. -
Assessing the Permissiveness of Complex Bacterial Communities Towards Conjugal Plasmids – Development of a Novel Method
Downloaded from orbit.dtu.dk on: Dec 20, 2017 Assessing the permissiveness of complex bacterial communities towards conjugal plasmids – Development of a novel method Klümper, Uli; Riber, Leise; Sannazzaro, Analia; Dechesne, Arnaud; Musovic, Sanin; Hansen, Lars H.; Sørensen, Søren J.; Smets, Barth F. Published in: 12th Symposium on Bacterial Genetics and Ecology (BAGECO 12) Publication date: 2013 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Klümper, U., Riber, L., Sannazzaro, A., Dechesne, A., Musovic, S., Hansen, L. H., ... Smets, B. F. (2013). Assessing the permissiveness of complex bacterial communities towards conjugal plasmids – Development of a novel method. In 12th Symposium on Bacterial Genetics and Ecology (BAGECO 12): Networking and plasticity of microbial communities: The secret to success (pp. 56-57). Ljubljana, Slovenia. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright -
In Vitro Preformed Biofilms of Bacillus Safensis Inhibit the Adhesion And
biomolecules Article In Vitro Preformed Biofilms of Bacillus safensis Inhibit the Adhesion and Subsequent Development of Listeria monocytogenes on Stainless-Steel Surfaces Anne-Sophie Hascoët, Carolina Ripolles-Avila , Brayan R. H. Cervantes-Huamán and José Juan Rodríguez-Jerez * Human Nutrition and Food Science Area, Departament de Ciència Animal i dels Aliments, Universitat Autònoma de Barcelona (UAB), Edifici V-Campus de la UAB, 08193 Bellaterra (Cerdanyola del Vallès), Barcelona, Spain; [email protected] (A.-S.H.); [email protected] (C.R.-A.); [email protected] (B.R.H.C.-H.) * Correspondence: [email protected]; Tel.: +34-935-811-448 Abstract: Listeria monocytogenes continues to be one of the most important public health challenges for the meat sector. Many attempts have been made to establish the most efficient cleaning and disinfection protocols, but there is still the need for the sector to develop plans with different lines of action. In this regard, an interesting strategy could be based on the control of this type of foodborne pathogen through the resident microbiota naturally established on the surfaces. A potential inhibitor, Bacillus safensis, was found in a previous study that screened the interaction between the resident microbiota and L. monocytogenes in an Iberian pig processing plant. The aim of the present study was to evaluate the effect of preformed biofilms of Bacillus safensis on the adhesion and implantation Citation: Hascoët, A.-S.; of 22 strains of L. monocytogenes. Mature preformed B. safensis biofilms can inhibit adhesion and Ripolles-Avila, C.; Cervantes- the biofilm formation of multiple L. monocytogenes strains, eliminating the pathogen by a currently Huamán, B.R.H.; Rodríguez-Jerez, J.J. -
Selection of Endophytic Strains for Enhanced Bacteria-Assisted Phytoremediation of Organic Pollutants Posing a Public Health Hazard
International Journal of Molecular Sciences Review Selection of Endophytic Strains for Enhanced Bacteria-Assisted Phytoremediation of Organic Pollutants Posing a Public Health Hazard Magdalena Anna Kara´s*, Sylwia Wdowiak-Wróbel and Wojciech Sokołowski Department of Genetics and Microbiology, Institute of Biological Sciences, Faculty of Biology and Biotechnology, Maria Curie-Skłodowska University, Akademicka 19, 20-033 Lublin, Poland; [email protected] (S.W.-W.); [email protected] (W.S.) * Correspondence: [email protected]; Tel.: +48-81-537-50-58 Abstract: Anthropogenic activities generate a high quantity of organic pollutants, which have an impact on human health and cause adverse environmental effects. Monitoring of many hazardous contaminations is subject to legal regulations, but some substances such as therapeutic agents, personal care products, hormones, and derivatives of common organic compounds are currently not included in these regulations. Classical methods of removal of organic pollutants involve economically challenging processes. In this regard, remediation with biological agents can be an alternative. For in situ decontamination, the plant-based approach called phytoremediation can be used. However, the main disadvantages of this method are the limited accumulation capacity of plants, sensitivity to the action of high concentrations of hazardous pollutants, and no possibility of using pollutants for growth. To overcome these drawbacks and additionally increase the efficiency of Citation: Kara´s,M.A.; the process, an integrated technology of bacteria-assisted phytoremediation is being used recently. Wdowiak-Wróbel, S.; Sokołowski, W. For the system to work, it is necessary to properly select partners, especially endophytes for specific Selection of Endophytic Strains for Enhanced Bacteria-Assisted plants, based on the knowledge of their metabolic abilities and plant colonization capacity. -
Resistant Staphylococcus Aureus (MRSA) in Seagrass from Rote Ndao, East Nusa Tenggara, Indonesia
BIODIVERSITAS ISSN: 1412-033X Volume 18, Number 2, April 2017 E-ISSN: 2085-4722 Pages: 733-740 DOI: 10.13057/biodiv/d180242 Endophytic bacteria producing antibacterial against methicillin- resistant Staphylococcus aureus (MRSA) in seagrass from Rote Ndao, East Nusa Tenggara, Indonesia DIAN SAGITA FITRI, ARTINI PANGASTUTI, ARI SUSILOWATI♥, SUTARNO Department of Bioscience, Graduate Program, Universitas Sebelas Maret. Jl. Ir. Sutami No. 36A Kentingan, Surakarta, 57126, Central Java, Indonesia. Tel./Fax.: +62-271-632450, ♥email: [email protected], [email protected] Manuscript received: 24 June 2016. Revision accepted: 13 April 2017. Abstract. Fitri DS, Pangastuti A, Susilowati A, Sutarno. 2017. Endophytic bacteria producing antibacterial against methicillin-resistant Staphylococcus aureus (MRSA) in seagrass from Rote Ndao, East Nusa Tenggara, Indonesia. Biodiversitas 18: 733-740. Methicillin- resistant Staphylococcus aureus (MRSA) are bacteria that resistant to the various type of antibiotics and yet cannot be handled comprehensively. The discovery of new antibiotic from endophytic bacteria in seagrass of Rote Island is an option to overcome the resistance. The aims of this research were to screen endophytic bacteria inhibit MRSA from seagrass, to determine the species of the endophytic bacteria and the genetic relationship. Isolation of endophytic bacteria has carried out by inoculating surface sterilization seagrass leaves on Marine Agar (MA) medium. Selection of potential endophytic bacteria-producing anti-MRSA has done using overlay method against MRSA, gram-positive Bacillus subtilis, and gram-negative Escherichia coli. Identification of the endophytic bacteria based on the sequence of 16S rRNA encoding gene. The results showed that there were eight isolates of endophytic bacteria which have antibacterial activity against MRSA of seagrass Enhalus acoroides, Thalassia hemprichii, and Cymodocea rotundata in the Litianak and Oeseli Beaches, Rote Ndao. -
Bacillus Massiliogorillae Sp. Nov
Standards in Genomic Sciences (2013) 9:93-105 DOI:10.4056/sigs.4388124 Non-contiguous finished genome sequence and description of Bacillus massiliogorillae sp. nov. Mamadou Bhoye Keita1, Seydina M. Diene1, Catherine Robert1, Didier Raoult1,2, Pierre- Edouard Fournier1, and Fadi Bittar1* 1URMITE, Aix-Marseille Université, Faculté de Médecine, Marseille, France 2King Fahad Medical Research Center, King Abdul Aziz University, Jeddah, Saudi Arabia *Correspondence: Fadi Bittar ([email protected]) Keywords: Bacillus massiliogorillae, genome, culturomics, taxonogenomics Strain G2T sp. nov. is the type strain of B. massiliogorillae, a proposed new species within the genus Bacillus. This strain, whose genome is described here, was isolated in France from the fecal sample of a wild western lowland gorilla from Cameroon. B. massiliogorillae is a facul- tative anaerobic, Gram-variable, rod-shaped bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 5,431,633 bp long genome (1 chromosome but no plasmid) contains 5,179 protein-coding and 98 RNA genes, including 91 tRNA genes. Introduction Strain G2T (= CSUR P206 = DSM 26159) is the type Here we present a summary classification and a strain of B. massiliogorillae sp. nov. This bacterium set of features for B. massiliogorillae sp. nov. strain is a Gram-variable, facultatively anaerobic, indole- G2T together with the description of the complete negative bacillus having rounded-ends. It was iso- genome sequence and annotation. These charac- lated from the stool sample of Gorilla gorilla goril- teristics support the circumscription of the spe- la as part of a “culturomics” study aiming at culti- cies B.