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A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
Protistology Structure and Development of Pelomyxa Gruberi
Protistology 4 (3), 227244 (2006) Protistology Structure and development of Pelomyxa gruberi sp. n. (Peloflagellatea, Pelobiontida) Alexander O. Frolov 1, Andrew V. Goodkov 2, Ludmila V. Chystjakova 3 and Sergei O. Skarlato 2 1 Zoological Institute RAS, St. Petersburg, Russia 2 Institute of Cytology RAS, St. Petersburg, Russia 3 Biological Research Institute of St. Petersburg State University, Russia Summary The general morphology, ultrastructure, and development of a new pelobiont protist, Pelomyxa gruberi, have been described. The entire life cycle of this eukaryotic microbe involves an alteration of uni and multinucleate stages and is commonly completed within a year. Reproduction occurs by plasmotomy of multinucleate amoebae: they form division rosettes or divide unequally. Various surface parts of this slowlymoving organism characteristically form fingershaped hyaline protrusions. Besides, during the directed monopodial movement, a broad zone of hyaline cytoplasm with slender fingershaped hyaline protrusions is formed at the anterior part of the cell. In multinucleate stages up to 16 or even 32 nuclei of a vesicular type may be counted. Individuals with the highest numbers of nuclei were reported from the southernmost part of the investigated area: the NorthWest Russia. Each nucleus of all life cycle stages is surrounded with microtubules. The structure of the flagellar apparatus differs in individuals of different age. Small uninucleate forms have considerably fewer flagella per cell than do larger or multinucleate amoebae but these may have aflagellated basal bodies submerged into the cytoplasm. In young individuals, undulipodia, where available, emerge from a characteristic flagellar pocket or tunnel. The basal bodies and associated rootlet microtubular derivatives (one radial and one basal) are organized similarly at all life cycle stages. -
Comprehensive Phylogenetic Reconstruction of Amoebozoa Based on Concatenated Analyses of SSU-Rdna and Actin Genes
Smith ScholarWorks Biological Sciences: Faculty Publications Biological Sciences 8-2-2011 Comprehensive Phylogenetic Reconstruction of Amoebozoa Based on Concatenated Analyses of SSU-rDNA and Actin Genes Daniel J.G. Lahr University of Massachusetts Amherst Jessica Grant Smith College Truc Nguyen Smith College Jian Hua Lin Smith College Laura A. Katz Smith College, [email protected] Follow this and additional works at: https://scholarworks.smith.edu/bio_facpubs Part of the Biology Commons Recommended Citation Lahr, Daniel J.G.; Grant, Jessica; Nguyen, Truc; Lin, Jian Hua; and Katz, Laura A., "Comprehensive Phylogenetic Reconstruction of Amoebozoa Based on Concatenated Analyses of SSU-rDNA and Actin Genes" (2011). Biological Sciences: Faculty Publications, Smith College, Northampton, MA. https://scholarworks.smith.edu/bio_facpubs/121 This Article has been accepted for inclusion in Biological Sciences: Faculty Publications by an authorized administrator of Smith ScholarWorks. For more information, please contact [email protected] Comprehensive Phylogenetic Reconstruction of Amoebozoa Based on Concatenated Analyses of SSU- rDNA and Actin Genes Daniel J. G. Lahr1,2, Jessica Grant2, Truc Nguyen2, Jian Hua Lin2, Laura A. Katz1,2* 1 Graduate Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, Massachusetts, United States of America, 2 Department of Biological Sciences, Smith College, Northampton, Massachusetts, United States of America Abstract Evolutionary relationships within Amoebozoa have been the subject -
Marine Biological Laboratory) Data Are All from EST Analyses
TABLE S1. Data characterized for this study. rDNA 3 - - Culture 3 - etK sp70cyt rc5 f1a f2 ps22a ps23a Lineage Taxon accession # Lab sec61 SSU 14 40S Actin Atub Btub E E G H Hsp90 M R R T SUM Cercomonadida Heteromita globosa 50780 Katz 1 1 Cercomonadida Bodomorpha minima 50339 Katz 1 1 Euglyphida Capsellina sp. 50039 Katz 1 1 1 1 4 Gymnophrea Gymnophrys sp. 50923 Katz 1 1 2 Cercomonadida Massisteria marina 50266 Katz 1 1 1 1 4 Foraminifera Ammonia sp. T7 Katz 1 1 2 Foraminifera Ovammina opaca Katz 1 1 1 1 4 Gromia Gromia sp. Antarctica Katz 1 1 Proleptomonas Proleptomonas faecicola 50735 Katz 1 1 1 1 4 Theratromyxa Theratromyxa weberi 50200 Katz 1 1 Ministeria Ministeria vibrans 50519 Katz 1 1 Fornicata Trepomonas agilis 50286 Katz 1 1 Soginia “Soginia anisocystis” 50646 Katz 1 1 1 1 1 5 Stephanopogon Stephanopogon apogon 50096 Katz 1 1 Carolina Tubulinea Arcella hemisphaerica 13-1310 Katz 1 1 2 Cercomonadida Heteromita sp. PRA-74 MBL 1 1 1 1 1 1 1 7 Rhizaria Corallomyxa tenera 50975 MBL 1 1 1 3 Euglenozoa Diplonema papillatum 50162 MBL 1 1 1 1 1 1 1 1 8 Euglenozoa Bodo saltans CCAP1907 MBL 1 1 1 1 1 5 Alveolates Chilodonella uncinata 50194 MBL 1 1 1 1 4 Amoebozoa Arachnula sp. 50593 MBL 1 1 2 Katz lab work based on genomic PCRs and MBL (Marine Biological Laboratory) data are all from EST analyses. Culture accession number is ATTC unless noted. GenBank accession numbers for new sequences (including paralogs) are GQ377645-GQ377715 and HM244866-HM244878. -
Biological Diversity 3
BIOLOGICAL DIVERSITY: PROTISTS: STEM EUKARYOTES Table of Contents Evolution of Eukaryotes | Eukaryotic Organelles and Prokaryotic Symbionts | Classification of Protists Kingdom Archaezoa | Kingdom Euglenozoa | Kingdom Alveolata | Algae | Kingdom Stramenopila Kingdom Rhodophyta | Slime Molds | The Fossil Record | Links Evolution of Eukaryotes | Back to Top The transition to eukaryotic cells appears to have occurred during the Proterozoic Era, about 1.2 to 1.5 billion years ago. However, recent genetic studies suggest eukaryotes diverged from prokaryotes closer to 2 billion years ago. Fossils do not yet agree with this date. The old Kingdom Protista, as I learned it long ago, thus contains some living groups that might serve as possible models for the early eukaryotes. This taxonomic kingdom has been broken into many new kingdoms, reflecting new studies and techniques that help elucidate the true phylogenetic sequence of life on Earth. Protists exhibit a great deal of variation in their life histories (life cycles). They exhibit an alternation between diploid and haploid phases that is similar to the alternation of generations found in plants. Protist life cycles vary from diploid dominant, to haploid dominant. A generalized eukaryote life cycle is shown in Figure 1. Figure 1. Life cycle of an unspecified organism. Image from Purves et al., Life: The Science of Biology, 4th Edition, by Sinauer Associates (www.sinauer.com) and WH Freeman (www.whfreeman.com), used with permission. The great diversity of form, habitat, mode of nutrition, and life history exhibited by eukaryotes suggests they evolved several times from various groups of prokaryotes. This makes the Protista a polyphyletic group. Eukaryotes are generally larger, have a variety of membrane-bound organelles, greater internal complexity than prokaryotic cells, and has a secialized method of cell division (meiosis) that is a prelude to true sexual reproduction. -
Autumn Congregation
THE UNIVERSITY OF BRITISH COLUMBIA AUTUMN CONGREGATION FOR THE CONFERRING OF DEGREES FRIDAY, OCTOBER TWENTY-SIXTH NINETEEN HUNDRED AND SIXTY-TWO 0 CANADA O Canada! Our Home and Native Land! True patriot-love in all thy sons command. With glowing hearts we see thee rise, The True North, strong and free, And stand on guard, O Canada, We stand on guard for thee. O Canada, glorious and free! O Canada, we stand on guard for thee! O Canada, we stand on guard for thee! MUSICAL PROGRAMME by PROFESSOR LESLIE G. CROUCH ORGANIST i PROGRAMME OF CEREMONY THE DEGREE OF DOCTOR OF PHILOSOPHY AM, Mohammed Youssouf, B.Sc. (Calcutta), M.Sc. (Brit. Col.), Pakistan Zoology Thesis: "Meristic Variation in the Medaka (Oryzias latipes) Produced by Tem O CANADA perature and by Chemicals Affecting Metabolism." Brown, Alistair Chalmers Ramsay, B.Sc. (St. Andrews), Scotland Chemistry Thesis: "A Kinetic Study of the Addition of the Ethyl Radical to Conjugated INVOCATION Dlenes and Related Compounds." by The Reverend W. John Bishop Cavell, Ronald George, B.Sc. (McGill), M.Sc. (Brit. Col.), Quebec Chemistry Thesis: 'The Fluorides of Vanadium." REMARKS Csizmadia, Imre Gyula, Eng. Chem., Polytech. (Budapest), by PHYLLIS GREGORY ROSS M.Sc. (Brit. Col.), Vancouver Chemistry Thesis: "Synthesis and Photolysis of Aromatic Nitrate Esters." Chancellor of the University of British Columbia George, Simon, B.Sc. (Travancore), M.Sc. (Saugar), India Physics Thesis: "A Study of the Spark Spectra of Selenium." CONFERRING OF HONORARY DEGREES Gilson, Denis Frank Robert, B.Sc. (London), M.Sc.( Brit. Col.), by the Chancellor England Chemistry Thesis: "Nuclear Magnetic Resonance and Infra-Red Spectroscopic Studies on Clathrates and Weak Charge Transfer Complexes." THE DEGREE OF DOCTOR OF LAWS Hattingh, Willem Hendrlk Jacobus, B.Sc. -
Amoebae and Amoeboid Protists Form a Large and Diverse Assemblage of Eukaryotes Characterized by Various Types of Pseudopodia
J. Eukaryot. Microbiol., 56(1), 2009 pp. 16–25 r 2009 The Author(s) Journal compilation r 2009 by the International Society of Protistologists DOI: 10.1111/j.1550-7408.2008.00379.x Untangling the Phylogeny of Amoeboid Protists1 JAN PAWLOWSKI and FABIEN BURKI Department of Zoology and Animal Biology, University of Geneva, Geneva, Switzerland ABSTRACT. The amoebae and amoeboid protists form a large and diverse assemblage of eukaryotes characterized by various types of pseudopodia. For convenience, the traditional morphology-based classification grouped them together in a macrotaxon named Sarcodina. Molecular phylogenies contributed to the dismantlement of this assemblage, placing the majority of sarcodinids into two new supergroups: Amoebozoa and Rhizaria. In this review, we describe the taxonomic composition of both supergroups and present their small subunit rDNA-based phylogeny. We comment on the advantages and weaknesses of these phylogenies and emphasize the necessity of taxon-rich multigene datasets to resolve phylogenetic relationships within Amoebozoa and Rhizaria. We show the importance of environmental sequencing as a way of increasing taxon sampling in these supergroups. Finally, we highlight the interest of Amoebozoa and Rhizaria for understanding eukaryotic evolution and suggest that resolving their phylogenies will be among the main challenges for future phylogenomic analyses. Key Words. Amoebae, Amoebozoa, eukaryote, evolution, Foraminifera, Radiolaria, Rhizaria, SSU, rDNA. FROM SARCODINA TO AMOEBOZOA AND RHIZARIA ribosomal genes. The most spectacular fast-evolving lineages, HE amoebae and amoeboid protists form an important part of such as foraminiferans (Pawlowski et al. 1996), polycystines Teukaryotic diversity, amounting for about 15,000 described (Amaral Zettler, Sogin, and Caron 1997), pelobionts (Hinkle species (Adl et al. -
The Phagotrophic Origin of Eukaryotes and Phylogenetic Classification Of
International Journal of Systematic and Evolutionary Microbiology (2002), 52, 297–354 DOI: 10.1099/ijs.0.02058-0 The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa Department of Zoology, T. Cavalier-Smith University of Oxford, South Parks Road, Oxford OX1 3PS, UK Tel: j44 1865 281065. Fax: j44 1865 281310. e-mail: tom.cavalier-smith!zoo.ox.ac.uk Eukaryotes and archaebacteria form the clade neomura and are sisters, as shown decisively by genes fragmented only in archaebacteria and by many sequence trees. This sisterhood refutes all theories that eukaryotes originated by merging an archaebacterium and an α-proteobacterium, which also fail to account for numerous features shared specifically by eukaryotes and actinobacteria. I revise the phagotrophy theory of eukaryote origins by arguing that the essentially autogenous origins of most eukaryotic cell properties (phagotrophy, endomembrane system including peroxisomes, cytoskeleton, nucleus, mitosis and sex) partially overlapped and were synergistic with the symbiogenetic origin of mitochondria from an α-proteobacterium. These radical innovations occurred in a derivative of the neomuran common ancestor, which itself had evolved immediately prior to the divergence of eukaryotes and archaebacteria by drastic alterations to its eubacterial ancestor, an actinobacterial posibacterium able to make sterols, by replacing murein peptidoglycan by N-linked glycoproteins and a multitude of other shared neomuran novelties. The conversion of the rigid neomuran wall into a flexible surface coat and the associated origin of phagotrophy were instrumental in the evolution of the endomembrane system, cytoskeleton, nuclear organization and division and sexual life-cycles. Cilia evolved not by symbiogenesis but by autogenous specialization of the cytoskeleton. -
Branches on the Tree of Life: Protists
BRANCHES ON THE TREE OF LIFE: PROTISTS . A New DVD for Biology Teaching from BioMEDIA ASSOCIATES ©2004 Branches on the Tree of Life: PROTISTS Written, produced and photographed by Bruce Russell All photos in this guide are from the DVD Cosmerium, a green alga Arcella The goal of this program is to show a representative sample of the great diversity of protists, and to show why they need a new classification reflecting our growing understanding of their long evolutionary history. The protists shown can be found in habitats such as: roadside puddles, park duck ponds, aquariums, birdbaths and in the gut of termites. We hope that these observations will encourage students to collect pond water samples and see for themselves this amazing hidden world. The live photography was accomplished using a variety microscope techniques, including dark field (good for showing the natural color of subjects) and the most advanced forms of differential interference contrast (DIC gives contrast to transparent structures that would be invisible in normal bright field microscopy). While these forms of imaging living protists are particularly revealing for some aspects of micro-organism biology, all of the organisms seen here can be studied BRANCHES ON THE TREE OF LIFE: PROTISTS successfully with student microscopes. IMPORTANT NOTE: This program packs a lot of information and a wealth of observational data into nine different modules. We recommend that the material be viewed module by module, stopping for discussion and replay as needed. “Discussion starters” for the various modules are provided in this guide. Chapters on this DVD: What is a Protist? The Euglenids Micrasterias Diatoms and Their Unlikely Relatives Amoebas and Heliozoans Green Protists Colonial Protists Insiders Ciliated Protists Paramecium (Additional Opservations): Flagellated Protists Flagellate “Unknowns” to identify Amoeboid Protists Amoeba “Unknowns” to identify Ciliated Protists Ciliate “Unknowns” to identify CHAPTER CONTENTS What is a Protist ... -
Observations on the Biology of Pelomyxa Palustris Greeff, Collected Under Polysaprobic Conditions Daniel Henry Stern
University of Richmond UR Scholarship Repository Master's Theses Student Research 1959 Observations on the biology of Pelomyxa palustris Greeff, collected under polysaprobic conditions Daniel Henry Stern Follow this and additional works at: http://scholarship.richmond.edu/masters-theses Part of the Biology Commons Recommended Citation Stern, Daniel Henry, "Observations on the biology of Pelomyxa palustris Greeff, collected under polysaprobic conditions" (1959). Master's Theses. Paper 1048. This Thesis is brought to you for free and open access by the Student Research at UR Scholarship Repository. It has been accepted for inclusion in Master's Theses by an authorized administrator of UR Scholarship Repository. For more information, please contact [email protected]. OBSERVATIONS ON THE BIOLOGY OF PELOMYXA PALUSTRIS GREEFF COLLECTED UNDER POLYSAPROBIC CONDITIONS by Daniel Henry Stern A Thesis Presented to the Graduate School of the University of Richmond in Partial Fulfillment of the Requirements for the Degre~ of Mast.er of Science University of Richmond May, 1959 ii. ACKNOWLEDGEMENTS It is a pleasure to express my gratitude to the members of the faculty of the Department of Biology for the opportunity of conducting this investigation. I am especially grateful to Dr. Nolan E. Rice for his suggestion of the problem and for his guidance throughout its course. I am indebted to Dr. John c. Strickland and Dr. Wilton R. Tenney for their advice and criticism and for use of personal equipment. Grateful acknowledgement is made to the other members of the staff of the Department of Biology, Dr. Jack D. Burke, . Dr. Warwick R. West, and Dr. William s. -
1958-1959 Undergraduate Catalogue
FOUNDED 1791 • BURLINGTON, VERMONT Bulletin of THE UNIVERSITY OF V E R M O N T THE CATALOGUE • 1958-1959 ANNOUNCEMENTS • 1959-1960 CORRESPONDENCE Admissions For all matters pertaining to the admission of undergraduate students, including requisitions for the catalogue, and information concerning rooms, tuition, and scholarships Director of Admissions Evening Division Director of Evening Division College of Medicine Dean of the College of Medicine Graduate College Dean of the Graduate College Summer Session Director of the Summer Session Transcripts of Records Office of Admissions and Records Employment of Seniors and Alumni Director of Placement Matters of Alumni Interest Alumni Secretary Matters of General University Interest The President Bulletin of The University of Vermont VOLUME 56 APRIL, 1959 NUMBER 13 Published by the University of Vermont, Burlington, Vermont, sixteen times a year—twice each in September, November, December, February, and May; once in January and April; and four times in March. Second-class postage paid at Burlington, Vermont. THE CONTENTS EDUCATION AT VERMONT 1 STUDENT LIFE II THE ADMISSION OF STUDENTS 20 STUDENT EXPENSES 24 GENERAL INFORMATION 29 THE COLLEGE OF AGRICULTURE 34 THE COLLEGE OF ARTS AND SCIENCES 47 THE SCHOOL OF DENTAL HYGIENE S3 THE COLLEGE OF EDUCATION AND NURSING SS THE COLLEGE OF TECHNOLOGY 63 THE GRADUATE COLLEGE 73 THE COLLEGE OF MEDICINE 81 THE UNIVERSITY EXTENSION 84 COURSES OF INSTRUCTION 87 PERSONNEL 167 TFIE ALUMNI COUNCIL 189 ENROLLMENT STATISTICS 191 DEGREES AND PRIZES 194 LOAN FUNDS, SCHOLARSHIPS, AND PRIZES 204 GENERAL INDEX 212 ACADEMIC CALENDAR 21J UVM* § The University is located at Burlington, Vermont, overlooking an attractive tree-shaded city situated on the shores of Lake Champlain. -
Anaerobic Derivates of Mitochondria and Peroxisomes in the Free-Living Amoeba Pelomyxa Schiedti Revealed by Single-Cell Genomics
Anaerobic derivates of mitochondria and peroxisomes in the free-living amoeba Pelomyxa schiedti revealed by single-cell genomics Kristína Záhonová1,2, Sebastian Cristian Treitli1, Tien Le1, Ingrid Škodová-Sveráková2,3, Pavla Hanousková4, Ivan Čepička4, Jan Tachezy1, Vladimír Hampl1 1 Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Vestec, Czech Republic 2 Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice (Budweis), Czech Republic 3 Department of Biochemistry, Faculty of Natural Sciences, Comenius University, Bratislava, Slovakia 4 Department of Zoology, Faculty of Science, Charles University, Prague, Czech Republic Corresponding authors: [email protected] (KZ); [email protected] (VH) S1 – S6 FIGURES Ceratiomyxa fruticulosa EF513175 58 Clastostelium recurvatum FJ766474 0.1 substitution/site 98 Protosporangium articulatum FJ792705 Multicilia marina AY268037 Dictyamoeba vorax KP864096 79 Ceratiomyxella tahitiensis FJ544419 Phalansterium solitarium AF280078 Angulamoeba microcystivorans KP864083 Heliamoeba mirabilis KP864095 Darbyshirella terrestris KP864087 80 Ischnamoeba montana KP864092 O Flamella beringiania KP219432 U 97 Telaepolella sp. KP864099 T Schizoplasmodiopsis amoeboidea EF513179 G R Planoprotostelium aurantium EU004604 100 O Protostelium mycophaga EU004603 U Polysphondylium pallidum AY040338 P 100 Dyctiostelium polycephalum AY040334 100 Dictyostelium discoideum AM168071 Cavostelium apophysatum EF513172 Soliformovum irregulare EF513181 Arcyria denudata AY643825