Git Basic Concepts and Usage
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Efficient Algorithms for Comparing, Storing, and Sharing
EFFICIENT ALGORITHMS FOR COMPARING, STORING, AND SHARING LARGE COLLECTIONS OF EVOLUTIONARY TREES A Dissertation by SUZANNE JUDE MATTHEWS Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY May 2012 Major Subject: Computer Science EFFICIENT ALGORITHMS FOR COMPARING, STORING, AND SHARING LARGE COLLECTIONS OF EVOLUTIONARY TREES A Dissertation by SUZANNE JUDE MATTHEWS Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Approved by: Chair of Committee, Tiffani L. Williams Committee Members, Nancy M. Amato Jennifer L. Welch James B. Woolley Head of Department, Hank W. Walker May 2012 Major Subject: Computer Science iii ABSTRACT Efficient Algorithms for Comparing, Storing, and Sharing Large Collections of Evolutionary Trees. (May 2012) Suzanne Jude Matthews, B.S.; M.S., Rensselaer Polytechnic Institute Chair of Advisory Committee: Dr. Tiffani L. Williams Evolutionary relationships between a group of organisms are commonly summarized in a phylogenetic (or evolutionary) tree. The goal of phylogenetic inference is to infer the best tree structure that represents the relationships between a group of organisms, given a set of observations (e.g. molecular sequences). However, popular heuristics for inferring phylogenies output tens to hundreds of thousands of equally weighted candidate trees. Biologists summarize these trees into a single structure called the consensus tree. The central assumption is that the information discarded has less value than the information retained. But, what if this assumption is not true? In this dissertation, we demonstrate the value of retaining and studying tree collections. -
Higher Inductive Types (Hits) Are a New Type Former!
Git as a HIT Dan Licata Wesleyan University 1 1 Darcs Git as a HIT Dan Licata Wesleyan University 1 1 HITs 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] Higher inductive types (HITs) are a new type former! 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] Higher inductive types (HITs) are a new type former! They were originally invented[Lumsdaine,Shulman,…] to model basic spaces (circle, spheres, the torus, …) and constructions in homotopy theory 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] Higher inductive types (HITs) are a new type former! They were originally invented[Lumsdaine,Shulman,…] to model basic spaces (circle, spheres, the torus, …) and constructions in homotopy theory But they have many other applications, including some programming ones! 2 Generator for 2 equality of equality Patches Patch a a 2c2 diff b d = < b c c --- > d 3 3 id a a b b -
Analysis of Devops Tools to Predict an Optimized Pipeline by Adding Weightage for Parameters
International Journal of Computer Applications (0975 – 8887) Volume 181 – No. 33, December 2018 Analysis of DevOps Tools to Predict an Optimized Pipeline by Adding Weightage for Parameters R. Vaasanthi V. Prasanna Kumari, PhD S. Philip Kingston Research Scholar, HOD, MCA Project Manager SCSVMV University Rajalakshmi Engineering Infosys, Mahindra City, Kanchipuram College, Chennai Chennai ABSTRACT cloud. Now-a-days more than ever, DevOps [Development + Operations] has gained a tremendous amount of attention in 2. SCM software industry. Selecting the tools for building the DevOps Source code management (SCM) is a software tool used for pipeline is not a trivial exercise as there are plethora’s of tools development, versioning and enables team working in available in market. It requires thought, planning, and multiple locations to work together more effectively. This preferably enough time to investigate and consult other plays a vital role in increasing team’s productivity. Some of people. Unfortunately, there isn’t enough time in the day to the SCM tools, considered for this study are GIT, SVN, CVS, dig for top-rated DevOps tools and its compatibility with ClearCase, Mercurial, TFS, Monotone, Bitkeeper, Code co- other tools. Each tool has its own pros/cons and compatibility op, Darcs, Endevor, Fossil, Perforce, Rational Synergy, of integrating with other tools. The objective of this paper is Source Safe, and GNU Bazaar. Table1 consists of SCM tools to propose an approach by adding weightage to each with weightage. parameter for the curated list of the DevOps tools. 3. BUILD Keywords Build is a process that enables source code to be automatically DevOps, SCM, dependencies, compatibility and pipeline compiled into binaries including code level unit testing to ensure individual pieces of code behave as expected [4]. -
DVCS Or a New Way to Use Version Control Systems for Freebsd
Brief history of VCS FreeBSD context & gures Is Arch/baz suited for FreeBSD? Mercurial to the rescue New processes & policies needed Conclusions DVCS or a new way to use Version Control Systems for FreeBSD Ollivier ROBERT <[email protected]> BSDCan 2006 Ottawa, Canada May, 12-13th, 2006 Ollivier ROBERT <[email protected]> DVCS or a new way to use Version Control Systems for FreeBSD Brief history of VCS FreeBSD context & gures Is Arch/baz suited for FreeBSD? Mercurial to the rescue New processes & policies needed Conclusions Agenda 1 Brief history of VCS 2 FreeBSD context & gures 3 Is Arch/baz suited for FreeBSD? 4 Mercurial to the rescue 5 New processes & policies needed 6 Conclusions Ollivier ROBERT <[email protected]> DVCS or a new way to use Version Control Systems for FreeBSD Brief history of VCS FreeBSD context & gures Is Arch/baz suited for FreeBSD? Mercurial to the rescue New processes & policies needed Conclusions The ancestors: SCCS, RCS File-oriented Use a subdirectory to store deltas and metadata Use lock-based architecture Support shared developments through NFS (fragile) SCCS is proprietary (System V), RCS is Open Source a SCCS clone exists: CSSC You can have a central repository with symlinks (RCS) Ollivier ROBERT <[email protected]> DVCS or a new way to use Version Control Systems for FreeBSD Brief history of VCS FreeBSD context & gures Is Arch/baz suited for FreeBSD? Mercurial to the rescue New processes & policies needed Conclusions CVS, the de facto VCS for the free world Initially written as shell wrappers over RCS then rewritten in C Centralised server Easy UI Use sandboxes to avoid locking Simple 3-way merges Can be replicated through CVSup or even rsync Extensive documentation (papers, websites, books) Free software and used everywhere (SourceForge for example) Ollivier ROBERT <[email protected]> DVCS or a new way to use Version Control Systems for FreeBSD Brief history of VCS FreeBSD context & gures Is Arch/baz suited for FreeBSD? Mercurial to the rescue New processes & policies needed Conclusions CVS annoyances and aws BUT.. -
GIT—A Stupid Content Tracker
GIT—A Stupid Content Tracker Junio C. Hamano Twin Sun, Inc. [email protected] Abstract The paper gives an overview of how git evolved and discusses the strengths and weaknesses of its design. Git was hurriedly hacked together by Linus Torvalds, after the Linux kernel project lost its license to use BitKeeper as its source code management system (SCM). It has since 1 Low level design quickly grown to become capable of managing the Linux kernel project source code. Other projects have started to replace their existing Git is a “stupid content tracker.” It is designed SCMs with it. to record and compare the whole tree states ef- ficiently. Unlike traditional source code control Among interesting things that it does are: systems, its data structures are not geared to- ward recording changes between revisions, but for making it efficient to retrieve the state of in- 1. giving a quick whole-tree diff, dividual revisions. 2. quick, simple, stupid-but-safe merge, The unit in git storage is an object. It records: 3. facilitating e-mail based patch exchange workflow, and • blob – the contents of a file (either the 4. helping to pin-point the change that caused contents of a regular file, or the path a particular bug by a bisection search in pointed at by a symbolic link). the development history. • tree – the contents of a directory, by recording the mapping from names to ob- The core git functionality is implemented as a jects (either a blob object or a tree object set of programs to allow higher-layer systems that represents a subdirectory). -
Darcs 2.0.0 (2.0.0 (+ 75 Patches)) Darcs
Darcs 2.0.0 (2.0.0 (+ 75 patches)) Darcs David Roundy April 23, 2008 2 Contents 1 Introduction 7 1.1 Features . 9 1.2 Switching from CVS . 11 1.3 Switching from arch . 12 2 Building darcs 15 2.1 Prerequisites . 15 2.2 Building on Mac OS X . 16 2.3 Building on Microsoft Windows . 16 2.4 Building from tarball . 16 2.5 Building darcs from the repository . 17 2.6 Building darcs with git . 18 2.7 Submitting patches to darcs . 18 3 Getting started 19 3.1 Creating your repository . 19 3.2 Making changes . 20 3.3 Making your repository visible to others . 20 3.4 Getting changes made to another repository . 21 3.5 Moving patches from one repository to another . 21 3.5.1 All pulls . 21 3.5.2 Send and apply manually . 21 3.5.3 Push . 22 3.5.4 Push —apply-as . 22 3.5.5 Sending signed patches by email . 23 3.6 Reducing disk space usage . 26 3.6.1 Linking between repositories . 26 3.6.2 Alternate formats for the pristine tree . 26 4 Configuring darcs 29 4.1 prefs . 29 4.2 Environment variables . 32 4.3 General-purpose variables . 33 4.4 Remote repositories . 34 3 4 CONTENTS 4.5 Highlighted output . 36 4.6 Character escaping and non-ASCII character encodings . 36 5 Best practices 39 5.1 Introduction . 39 5.2 Creating patches . 39 5.2.1 Changes . 40 5.2.2 Keeping or discarding changes . 40 5.2.3 Unrecording changes . -
Bazaar, Das DVCS
Bazaar, das DVCS Marek Kubica 20. November 2008 Marek Kubica Bazaar, das DVCS Vorweg ein paar Infos Mit was ich so spiele Bazaar in der Arbeit Mercurial für Python-Projekte Git für den Rest Welche Spielzeuge lass ich links liegen CVS wozu noch wo es SVN gibt? SVN wozu noch wenn es DVCS gibt? darcs lohnt sich nicht mehr monotone, codeville, arch obsolete das selbsgehackte, tolle DVCS deines Nachbarn ;) Marek Kubica Bazaar, das DVCS Geschichte In the beginning, there was GNU Arch Marek Kubica Bazaar, das DVCS GNU Arch Die Anfänge von DVCS CVS stinkt, wir brauchen was besseres SVN ist Evolution, keine Revolution GNU Arch war das erste DVCS mit dem ich in Kontakt kam (larch) fürchterlich kompliziert wurde dann von tla ersetzt immer noch fürchterlich Canonical hat tla 1.2 geforkt und Bazaar, baz genannt Paralell dazu: revc = Arch 2.0 Marek Kubica Bazaar, das DVCS Baz als Rettung? Von heiÿen Kartoeln baz war in C Was passiert: Canonical ruft Bazaar-NG ins Leben, bzr, lässt baz fallen Bazaar-NG wird in Bazaar umgetauft baz ist tot, tla ist tot, larch ist tot, revc ist bedeutungslos Hurra, GNU Arch ist endlich tot, es lebe bzr! Marek Kubica Bazaar, das DVCS bzr, der Retter Was bietet Bazaar? in Python geschrieben, mit einigen Speedups in Pyrex (C) reguläre Releases (quasi jeden Monat) Einfache Bedienung Meist ausreichende Performance Umfangreiche Dokumentation: Programmmeldungen, Manpages, Wiki, IRC-Channel (wenn man Geduld hat) Flexible Einsatzmöglichkeiten (verschiedene Workows) 1 Git mit Bazaar simulieren 2 SVN in Bazaar nachbauen (für Nostalgiker) freier Hoster wo man Code hochladen kann (Launchpad) Marek Kubica Bazaar, das DVCS Zeitleiste 2005 war eine aufregende Zeit 26. -
CSE 391 Lecture 9
CSE 391 Lecture 9 Version control with Git slides created by Ruth Anderson & Marty Stepp, images from http://git-scm.com/book/en/ http://www.cs.washington.edu/391/ 1 Problems Working Alone • Ever done one of the following? . Had code that worked, made a bunch of changes and saved it, which broke the code, and now you just want the working version back… . Accidentally deleted a critical file, hundreds of lines of code gone… . Somehow messed up the structure/contents of your code base, and want to just “undo” the crazy action you just did . Hard drive crash!!!! Everything’s gone, the day before deadline. • Possible options: . Save as (MyClass-v1.java) • Ugh. Just ugh. And now a single line change results in duplicating the entire file… 2 Problems Working in teams . Whose computer stores the "official" copy of the project? • Can we store the project files in a neutral "official" location? . Will we be able to read/write each other's changes? • Do we have the right file permissions? • Lets just email changed files back and forth! Yay! . What happens if we both try to edit the same file? • Bill just overwrote a file I worked on for 6 hours! . What happens if we make a mistake and corrupt an important file? • Is there a way to keep backups of our project files? . How do I know what code each teammate is working on? 3 Solution: Version Control • version control system: Software that tracks and manages changes to a set of files and resources. • You use version control all the time . -
Software Development a Practical Approach!
Software Development A Practical Approach! Hans-Petter Halvorsen https://www.halvorsen.blog https://halvorsen.blog Software Development A Practical Approach! Hans-Petter Halvorsen Software Development A Practical Approach! Hans-Petter Halvorsen Copyright © 2020 ISBN: 978-82-691106-0-9 Publisher Identifier: 978-82-691106 https://halvorsen.blog ii Preface The main goal with this document: • To give you an overview of what software engineering is • To take you beyond programming to engineering software What is Software Development? It is a complex process to develop modern and professional software today. This document tries to give a brief overview of Software Development. This document tries to focus on a practical approach regarding Software Development. So why do we need System Engineering? Here are some key factors: • Understand Customer Requirements o What does the customer needs (because they may not know it!) o Transform Customer requirements into working software • Planning o How do we reach our goals? o Will we finish within deadline? o Resources o What can go wrong? • Implementation o What kind of platforms and architecture should be used? o Split your work into manageable pieces iii • Quality and Performance o Make sure the software fulfills the customers’ needs We will learn how to build good (i.e. high quality) software, which includes: • Requirements Specification • Technical Design • Good User Experience (UX) • Improved Code Quality and Implementation • Testing • System Documentation • User Documentation • etc. You will find additional resources on this web page: http://www.halvorsen.blog/documents/programming/software_engineering/ iv Information about the author: Hans-Petter Halvorsen The author currently works at the University of South-Eastern Norway. -
Analysis and Comparison of Distributed Version Control Systems
Fachhochschul-Bachelorstudiengang SOFTWARE ENGINEERING A-4232 Hagenberg, Austria Analysis and Comparison of Distributed Version Control Systems Bachelorarbeit Teil 1 zur Erlangung des akademischen Grades Bachelor of Science in Engineering Eingereicht von Daniel Knittl-Frank Begutachter: DI Dr. Stefan Wagner Hagenberg, Juni 2010 Contents Abstract iii Kurzfassung iv 1 Introduction1 1.1 Motivation............................1 1.2 Goals...............................2 1.3 Content..............................2 2 Version Control in General3 2.1 Workflows.............................4 2.2 Foundations............................5 2.2.1 Glossary..........................5 2.2.2 Repository........................6 2.2.3 Working Directory....................7 2.2.4 Diff and Patch......................7 2.2.5 Merge...........................9 2.2.6 Mainline, Branches and Tags.............. 12 3 Centralized Version Control 14 3.1 Tools................................ 14 3.1.1 CVS............................ 14 3.1.2 Subversion........................ 15 4 Distributed Version Control 17 4.1 Differences............................. 17 4.2 Concepts............................. 19 4.2.1 Revision identifiers.................... 20 4.2.2 Integrity.......................... 20 4.2.3 History representation.................. 21 4.3 Tools................................ 21 4.3.1 Bazaar........................... 22 4.3.2 Git............................. 27 4.3.3 Mercurial......................... 32 i Contents ii 5 Comparison 38 5.1 Testing Scenario......................... 38 5.2 Results............................... 38 6 Conclusion 46 Abstract Version and configuration control systems have played an essential role in software development for the last decades. Starting with the new millennium a new trend surfaced, distributed version control: dedicated central servers for few authorized users lose importance in favor of a more dynamic workflow, in which every developer works with a copy of a project's complete history and changes are synchronized ad-hoc between developers. -
Linux-Cookbook.Pdf
LINUX COOKBOOK ™ Other Linux resources from O’Reilly Related titles Linux Device Drivers Exploring the JDS Linux Linux in a Nutshell Desktop Running Linux Learning Red Hat Enterprise Building Embedded Linux Linux and Fedora Systems Linux Pocket Guide Linux Security Cookbook Understanding the Linux Kernel Linux Books linux.oreilly.com is a complete catalog of O’Reilly’s books on Resource Center Linux and Unix and related technologies, including sample chapters and code examples. ONLamp.com is the premier site for the open source web plat- form: Linux, Apache, MySQL, and either Perl, Python, or PHP. Conferences O’Reilly brings diverse innovators together to nurture the ideas that spark revolutionary industries. We specialize in document- ing the latest tools and systems, translating the innovator’s knowledge into useful skills for those in the trenches. Visit conferences.oreilly.com for our upcoming events. Safari Bookshelf (safari.oreilly.com) is the premier online refer- ence library for programmers and IT professionals. Conduct searches across more than 1,000 books. Subscribers can zero in on answers to time-critical questions in a matter of seconds. Read the books on your Bookshelf from cover to cover or sim- ply flip to the page you need. Try it today with a free trial. LINUX COOKBOOK ™ Carla Schroder Beijing • Cambridge • Farnham • Köln • Paris • Sebastopol • Taipei • Tokyo Linux Cookbook™ by Carla Schroder Copyright © 2005 O’Reilly Media, Inc. All rights reserved. Printed in the United States of America. Published by O’Reilly Media, Inc., 1005 Gravenstein Highway North, Sebastopol, CA 95472. O’Reilly books may be purchased for educational, business, or sales promotional use. -
Distributed Versioning for Everyone
Distributed versioning for everyone Distributed versioning for everyone Nicolas Pouillard [email protected] March 20, 2008 Nicolas Pouillard Distributed versioning for everyoneMarch 20, 2008 1 / 48 Distributed versioning for everyone Introduction Outline 1 Introduction 2 Principles of Distributed Versioning 3 Darcs is one of them 4 Conclusion Nicolas Pouillard Distributed versioning for everyoneMarch 20, 2008 2 / 48 Distributed versioning for everyone Introduction SCM: “Source Code Manager” Keeps track of changes to source code so you can track down bugs and work collaboratively. Most famous example: CVS Numerous acronyms: RCS, SCM, VCS DSCM: Distributed Source Code Manager Nicolas Pouillard Distributed versioning for everyoneMarch 20, 2008 3 / 48 Distributed versioning for everyone Introduction Purpose What’s the purpose of this presentation Show the importance of the distributed feature Enrich your toolbox with a DSCM Exorcize rumors about darcs Show how DSCM are adapted for personal use What’s not the purpose of it A flame against other DSCMs A precise darcs tutorial A real explanation of the Theory of patches Nicolas Pouillard Distributed versioning for everyoneMarch 20, 2008 4 / 48 Distributed versioning for everyone Principles of Distributed Versioning Outline 1 Introduction 2 Principles of Distributed Versioning 3 Darcs is one of them 4 Conclusion Nicolas Pouillard Distributed versioning for everyoneMarch 20, 2008 5 / 48 Distributed versioning for everyone Principles of Distributed Versioning Distributed rather than centralized