Continuous Integration for Decentralised Development of Service-Based Software Systems
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Efficient Algorithms for Comparing, Storing, and Sharing
EFFICIENT ALGORITHMS FOR COMPARING, STORING, AND SHARING LARGE COLLECTIONS OF EVOLUTIONARY TREES A Dissertation by SUZANNE JUDE MATTHEWS Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY May 2012 Major Subject: Computer Science EFFICIENT ALGORITHMS FOR COMPARING, STORING, AND SHARING LARGE COLLECTIONS OF EVOLUTIONARY TREES A Dissertation by SUZANNE JUDE MATTHEWS Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Approved by: Chair of Committee, Tiffani L. Williams Committee Members, Nancy M. Amato Jennifer L. Welch James B. Woolley Head of Department, Hank W. Walker May 2012 Major Subject: Computer Science iii ABSTRACT Efficient Algorithms for Comparing, Storing, and Sharing Large Collections of Evolutionary Trees. (May 2012) Suzanne Jude Matthews, B.S.; M.S., Rensselaer Polytechnic Institute Chair of Advisory Committee: Dr. Tiffani L. Williams Evolutionary relationships between a group of organisms are commonly summarized in a phylogenetic (or evolutionary) tree. The goal of phylogenetic inference is to infer the best tree structure that represents the relationships between a group of organisms, given a set of observations (e.g. molecular sequences). However, popular heuristics for inferring phylogenies output tens to hundreds of thousands of equally weighted candidate trees. Biologists summarize these trees into a single structure called the consensus tree. The central assumption is that the information discarded has less value than the information retained. But, what if this assumption is not true? In this dissertation, we demonstrate the value of retaining and studying tree collections. -
Higher Inductive Types (Hits) Are a New Type Former!
Git as a HIT Dan Licata Wesleyan University 1 1 Darcs Git as a HIT Dan Licata Wesleyan University 1 1 HITs 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] Higher inductive types (HITs) are a new type former! 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] Higher inductive types (HITs) are a new type former! They were originally invented[Lumsdaine,Shulman,…] to model basic spaces (circle, spheres, the torus, …) and constructions in homotopy theory 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] Higher inductive types (HITs) are a new type former! They were originally invented[Lumsdaine,Shulman,…] to model basic spaces (circle, spheres, the torus, …) and constructions in homotopy theory But they have many other applications, including some programming ones! 2 Generator for 2 equality of equality Patches Patch a a 2c2 diff b d = < b c c --- > d 3 3 id a a b b -
DVCS Or a New Way to Use Version Control Systems for Freebsd
Brief history of VCS FreeBSD context & gures Is Arch/baz suited for FreeBSD? Mercurial to the rescue New processes & policies needed Conclusions DVCS or a new way to use Version Control Systems for FreeBSD Ollivier ROBERT <[email protected]> BSDCan 2006 Ottawa, Canada May, 12-13th, 2006 Ollivier ROBERT <[email protected]> DVCS or a new way to use Version Control Systems for FreeBSD Brief history of VCS FreeBSD context & gures Is Arch/baz suited for FreeBSD? Mercurial to the rescue New processes & policies needed Conclusions Agenda 1 Brief history of VCS 2 FreeBSD context & gures 3 Is Arch/baz suited for FreeBSD? 4 Mercurial to the rescue 5 New processes & policies needed 6 Conclusions Ollivier ROBERT <[email protected]> DVCS or a new way to use Version Control Systems for FreeBSD Brief history of VCS FreeBSD context & gures Is Arch/baz suited for FreeBSD? Mercurial to the rescue New processes & policies needed Conclusions The ancestors: SCCS, RCS File-oriented Use a subdirectory to store deltas and metadata Use lock-based architecture Support shared developments through NFS (fragile) SCCS is proprietary (System V), RCS is Open Source a SCCS clone exists: CSSC You can have a central repository with symlinks (RCS) Ollivier ROBERT <[email protected]> DVCS or a new way to use Version Control Systems for FreeBSD Brief history of VCS FreeBSD context & gures Is Arch/baz suited for FreeBSD? Mercurial to the rescue New processes & policies needed Conclusions CVS, the de facto VCS for the free world Initially written as shell wrappers over RCS then rewritten in C Centralised server Easy UI Use sandboxes to avoid locking Simple 3-way merges Can be replicated through CVSup or even rsync Extensive documentation (papers, websites, books) Free software and used everywhere (SourceForge for example) Ollivier ROBERT <[email protected]> DVCS or a new way to use Version Control Systems for FreeBSD Brief history of VCS FreeBSD context & gures Is Arch/baz suited for FreeBSD? Mercurial to the rescue New processes & policies needed Conclusions CVS annoyances and aws BUT.. -
Darcs 2.0.0 (2.0.0 (+ 75 Patches)) Darcs
Darcs 2.0.0 (2.0.0 (+ 75 patches)) Darcs David Roundy April 23, 2008 2 Contents 1 Introduction 7 1.1 Features . 9 1.2 Switching from CVS . 11 1.3 Switching from arch . 12 2 Building darcs 15 2.1 Prerequisites . 15 2.2 Building on Mac OS X . 16 2.3 Building on Microsoft Windows . 16 2.4 Building from tarball . 16 2.5 Building darcs from the repository . 17 2.6 Building darcs with git . 18 2.7 Submitting patches to darcs . 18 3 Getting started 19 3.1 Creating your repository . 19 3.2 Making changes . 20 3.3 Making your repository visible to others . 20 3.4 Getting changes made to another repository . 21 3.5 Moving patches from one repository to another . 21 3.5.1 All pulls . 21 3.5.2 Send and apply manually . 21 3.5.3 Push . 22 3.5.4 Push —apply-as . 22 3.5.5 Sending signed patches by email . 23 3.6 Reducing disk space usage . 26 3.6.1 Linking between repositories . 26 3.6.2 Alternate formats for the pristine tree . 26 4 Configuring darcs 29 4.1 prefs . 29 4.2 Environment variables . 32 4.3 General-purpose variables . 33 4.4 Remote repositories . 34 3 4 CONTENTS 4.5 Highlighted output . 36 4.6 Character escaping and non-ASCII character encodings . 36 5 Best practices 39 5.1 Introduction . 39 5.2 Creating patches . 39 5.2.1 Changes . 40 5.2.2 Keeping or discarding changes . 40 5.2.3 Unrecording changes . -
Distributed Versioning for Everyone
Distributed versioning for everyone Distributed versioning for everyone Nicolas Pouillard [email protected] March 20, 2008 Nicolas Pouillard Distributed versioning for everyoneMarch 20, 2008 1 / 48 Distributed versioning for everyone Introduction Outline 1 Introduction 2 Principles of Distributed Versioning 3 Darcs is one of them 4 Conclusion Nicolas Pouillard Distributed versioning for everyoneMarch 20, 2008 2 / 48 Distributed versioning for everyone Introduction SCM: “Source Code Manager” Keeps track of changes to source code so you can track down bugs and work collaboratively. Most famous example: CVS Numerous acronyms: RCS, SCM, VCS DSCM: Distributed Source Code Manager Nicolas Pouillard Distributed versioning for everyoneMarch 20, 2008 3 / 48 Distributed versioning for everyone Introduction Purpose What’s the purpose of this presentation Show the importance of the distributed feature Enrich your toolbox with a DSCM Exorcize rumors about darcs Show how DSCM are adapted for personal use What’s not the purpose of it A flame against other DSCMs A precise darcs tutorial A real explanation of the Theory of patches Nicolas Pouillard Distributed versioning for everyoneMarch 20, 2008 4 / 48 Distributed versioning for everyone Principles of Distributed Versioning Outline 1 Introduction 2 Principles of Distributed Versioning 3 Darcs is one of them 4 Conclusion Nicolas Pouillard Distributed versioning for everyoneMarch 20, 2008 5 / 48 Distributed versioning for everyone Principles of Distributed Versioning Distributed rather than centralized -
Git and Gerrit in Action and Lessons Learned Along the Path to Distributed Version Control
Git and Gerrit in Action And lessons learned along the path to distributed version control Chris Aniszczyk (Red Hat) Principal Software Engineer [email protected] http://aniszczyk.org About Me I've been using and hacking open source for ~12 years - contribute{d} to Gentoo Linux, Fedora Linux, Eclipse Hack on Eclipse, Git and other things at Red Hat Member of the Eclipse Board of Directors Member in the Eclipse Architecture Council I like to run! (2 mins short of Boston qualifying ;/) Co-author of RCP Book (www.eclipsercp.org) An Introduction to Git and Gerrit | © 2011 by Chris Aniszczyk Agenda History of Version Control (VCS) The Rise of Distributed Version Control (DVCS) Code Review with Git and Gerrit Lessons Learned at Eclipse moving to a DVCS Conclusion Q&A An Introduction to Git and Gerrit | © 2011 by Chris Aniszczyk Version Control Version Control Systems manage change “The only constant is change” (Heraclitus) An Introduction to Git and Gerrit | © 2011 by Chris Aniszczyk Why Version Control? VCS became essential to software development because: They allow teams to collaborate They manage change and allow for inspection They track ownership They track evolution of changes They allow for branching They allow for continuous integration An Introduction to Git and Gerrit | © 2011 by Chris Aniszczyk Version Control: The Ancients 1972 – Source Code Control System (SCCS) Born out of Bell Labs, based on interleaved deltas No open source implementations as far as I know 1982 – Revision Control System (RCS) Released as an alternative to SCCS -
Evolution of Version Control in Open Source Lessons Learned Along the Path to Distributed Version Control
Evolution of Version Control in Open Source Lessons learned along the path to distributed version control Chris Aniszczyk (Red Hat) Principal Software Engineer [email protected] http://aniszczyk.org About Me I've been using and hacking open source for ~12 years - contribute{d} to Gentoo Linux, Fedora Linux, Eclipse Eclipse Board of Directors, Committer Representative Member in the Eclipse {Architecture,Planning} Council I like to run! (just finished Chicago marathon in 3:20) Co-author of RCP Book (www.eclipsercp.org) Evolution of Version Control in Open Source | © 2010 by Chris Aniszczyk Agenda History of Version Control (VCS) The Rise of Distributed Version Control (DVCS) Lessons Learned at Eclipse moving to a DVCS Conclusion Q&A Picture 5 Evolution of Version Control in Open Source | © 2010 by Chris Aniszczyk Version Control Version Control Systems manage change “The only constant is change” (Heraclitus) Evolution of Version Control in Open Source | © 2010 by Chris Aniszczyk Why Version Control? VCS became essential to software development because: They allow teams to collaborate They manage change and allow for inspection They track ownership They track evolution of changes They allow for branching They allow for continuous integration Evolution of Version Control in Open Source | © 2010 by Chris Aniszczyk Version Control: The Ancients 1972 – Source Code Control System (SCCS) Born out of Bell Labs, based on interleaved deltas No open source implementations as far as I know 1982 – Revision Control System (RCS) Released as an alternative -
Version Control
Génie Logiciel Avancé Cours 7 — Version Control Stefano Zacchiroli [email protected] Laboratoire PPS, Université Paris Diderot - Paris 7 5 mai 2011 URL http://upsilon.cc/zack/teaching/1011/gla/ Copyright © 2011 Stefano Zacchiroli License Creative Commons Attribution-ShareAlike 3.0 Unported License http://creativecommons.org/licenses/by-sa/3.0/ Stefano Zacchiroli (Paris 7) Version Control 5 mai 2011 1 / 58 Disclaimer slides in English interactive demos Stefano Zacchiroli (Paris 7) Version Control 5 mai 2011 2 / 58 Sommaire 1 Version control Configuration management diff & patch Version control concepts Brief history of version control systems 2 Revision Control System (RCS) 3 Concurrent Versions System (CVS) 4 Subversion 5 Git 6 References Stefano Zacchiroli (Paris 7) Version Control 5 mai 2011 3 / 58 Sommaire 1 Version control Configuration management diff & patch Version control concepts Brief history of version control systems 2 Revision Control System (RCS) 3 Concurrent Versions System (CVS) 4 Subversion 5 Git 6 References Stefano Zacchiroli (Paris 7) Version Control 5 mai 2011 4 / 58 Sommaire 1 Version control Configuration management diff & patch Version control concepts Brief history of version control systems 2 Revision Control System (RCS) 3 Concurrent Versions System (CVS) 4 Subversion 5 Git 6 References Stefano Zacchiroli (Paris 7) Version Control 5 mai 2011 5 / 58 Change During the life time of a software project, everything changes : bugs are discovered and have to be fixed (code) system requirements change and need to be implemented external dependencies (e.g. new version of hardware and software you depend upon) change competitors might catch up most software systems can be thought of as a set of evolving versions potentially, each of them has to be maintained concurrently with the others Stefano Zacchiroli (Paris 7) Version Control 5 mai 2011 6 / 58 Configuration management Definition (Configuration Management) Configuration Management (CM) is concerned with the policies, processes, and tools for managing changing software systems. -
Oreilly Version Control with GIT.Pdf
Version Control with Git Jon Loeliger Beijing • Cambridge • Farnham • Köln • Sebastopol • Taipei • Tokyo Version Control with Git by Jon Loeliger Copyright © 2009 Jon Loeliger. All rights reserved. Printed in the United States of America. Published by O’Reilly Media, Inc., 1005 Gravenstein Highway North, Sebastopol, CA 95472. O’Reilly books may be purchased for educational, business, or sales promotional use. Online editions are also available for most titles (http://my.safaribooksonline.com). For more information, contact our corporate/institutional sales department: (800) 998-9938 or [email protected]. Editor: Andy Oram Indexer: Fred Brown Production Editor: Loranah Dimant Cover Designer: Karen Montgomery Proofreader: Katie Nopper DePasquale Interior Designer: David Futato Production Services: Newgen North America Illustrator: Robert Romano Printing History: May 2009: First Edition. Nutshell Handbook, the Nutshell Handbook logo, and the O’Reilly logo are registered trademarks of O’Reilly Media, Inc. Version Control with Git, the image of a long-eared bat, and related trade dress are trademarks of O’Reilly Media, Inc. Many of the designations used by manufacturers and sellers to distinguish their products are claimed as trademarks. Where those designations appear in this book, and O’Reilly Media, Inc. was aware of a trademark claim, the designations have been printed in caps or initial caps. While every precaution has been taken in the preparation of this book, the publisher and author assume no responsibility for errors or omissions, or for damages resulting from the use of the information con- tained herein. ISBN: 978-0-596-52012-0 [M] 1242320486 Table of Contents Preface . xi 1. -
David's Advanced Revision Control System
Hazırlık Darcs Hakkında Pratik Okuma Odevi¨ David’s Advanced Revision Control System Can Burak C¸ilingir1 1Istanbul˙ Bilgi Universitesi¨ Bilgisayar Bilimleri B¨ol¨um¨u [email protected] 5 S¸ubat 2007 Can Burak C¸ilingir Darcs Hazırlık Darcs Hakkında Versiyon Y¨onetimi Pratik Ge¸cmi¸s Okuma Odevi¨ Ne zaman bitecek? 1 Hazırlık Versiyon Y¨onetimi Ge¸cmi¸s 2 Darcs Hakkında 3 Pratik 4 Okuma Odevi¨ Can Burak C¸ilingir Darcs Hazırlık Darcs Hakkında Versiyon Y¨onetimi Pratik Ge¸cmi¸s Okuma Odevi¨ neye yarar? Can Burak C¸ilingir Darcs Hazırlık Darcs Hakkında Versiyon Y¨onetimi Pratik Ge¸cmi¸s Okuma Odevi¨ Aegis, ArX, Arch, BitKeeper, CM Synergy, CVS, Code Co-Op, Codeville, IBM Rational ClearCase, Mercurial, Monotone, OpenCM Perforce, PureCM, RCS, Subversion, Superversion, Vesta, Visual SourceSafe, bazaar-ng, git, monotone, svk http://better-scm.berlios.de/comparison/ http://zooko.com/revision control quick ref.html Can Burak C¸ilingir Darcs Hazırlık Darcs Hakkında Versiyon Y¨onetimi Pratik Ge¸cmi¸s Okuma Odevi¨ Aegis, ArX, Arch, BitKeeper, CM Synergy, CVS, Code Co-Op, Codeville, IBM Rational ClearCase, Mercurial, Monotone, OpenCM Perforce, PureCM, RCS, Subversion, Superversion, Vesta, Visual SourceSafe, bazaar-ng, git, monotone, svk http://better-scm.berlios.de/comparison/ http://zooko.com/revision control quick ref.html Can Burak C¸ilingir Darcs Hazırlık Darcs Hakkında Versiyon Y¨onetimi Pratik Ge¸cmi¸s Okuma Odevi¨ rcs Revision Control System, tek ki¸si cvs Concurrent Versioning System, birden fazla ki¸si svn Subversion, daha d¨uzg¨un -
Esa Study Contract Report
ESA STUDY CONTRACT REPORT ESA Contract No: Subject: Contractor: ESA ITT Number Current and Future Tech- Distributed Systems Group, AO/3-12280/07/NL/CB nologies for Collaborative Vienna University of Tech- Working Environments nology ESA CR() No: No of volumes: 1 Contractor’s Reference: This Volume No: 1 TEUN Abstract: This document reports the final, detailed result of the study on current and future technologies for collaborative working environments (CWEs). The goal of this study is to analyze current CWEs and whether they and their future trends are suitable for large- scale multinational organizations. To this end, we have analyzed the structure of large-scale organizations in general, and of ESA in particular, with respect to organization, geographical distribution, and IT environments. Requirements for CWEs used in collaborative work are presented. Based on an initial list of criteria given by ESA, we have revised and extended the list to introduce a comprehensive set of criteria for evaluating CWEs. The state-of-the- art CWEs are discussed and classified. We have selected 15 representative CWE products and evaluated and compared them in detail. From the evaluation and comparison of CWE products, we have presented our findings of current issues and future trends of CWEs. In particular, existing products provide many features required by large-scale and multinational organizations but those features are not well-integrated into a single system. Due to the complexity of collaborative work within those organizations, often many CWEs are used in parallel and it is not easy to integrate those CWEs together. The work described in this report was done under ESA Contract. -
Comparative Analysis of SCM Tools and Coexistence with Agile Methodology
Comparative Analysis of SCM tools and Coexistence with Agile Methodology Thesis submitted in partial fulfillment of the requirements for the award of degree of Master of Engineering in Computer Science and Engineering Submitted By Satyam Gupta (801332022) Under the supervision of: Dr. (Mrs.) Rinkle Rani Assistant Professor COMPUTER SCIENCE AND ENGINEERING DEPARTMENT THAPAR UNIVERSITY PATIALA – 147004 July 2015 Training Certificate i ii Abstract Now days there are huge evolvement in the field of IT, where people can control and manage their software development according to their need or requirement. The IT organizations need to produce quality product with the most economical and timely efficient way. To achieve this goal there are requirement of various software disciplines collaboration, Software Configuration Management (SCM) is one of the important discipline. With the help of SCM developers can manage different software artifacts. SCM is a tool based approach; SCM tools provide a great interface to reduce developer overhead. Various tools are available in the market. All these tools have their own functionality and capability. The involvement of Agile Methodology has facilitated developers to manage the product cycle timely and the use of SCM has made the management easier. This thesis explains two case studies; in the first part practical and relevant comparison among three Software Configuration Management tools namely Clearcase, Subversion and GIT has been done. The second part explains the coexistence of Agile and SCM practices which is usually considered as irrational. The research also focuses on the benefits from the user point of view and its role in improving the organizational capability.