Synthesis and Oxidation of Cysteine- and Penicillamine
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Detection and Formation Scenario of Citric Acid, Pyruvic Acid, and Other Possible Metabolism Precursors in Carbonaceous Meteorites
Detection and formation scenario of citric acid, pyruvic acid, and other possible metabolism precursors in carbonaceous meteorites George Coopera,1, Chris Reeda, Dang Nguyena, Malika Cartera, and Yi Wangb aExobiology Branch, Space Science Division, National Aeronautics and Space Administration-Ames Research Center, Moffett Field, CA 94035; and bDevelopment, Planning, Research, and Analysis/ZymaX Forensics Isotope, 600 South Andreasen Drive, Suite B, Escondido, CA 92029 Edited by David Deamer, University of California, Santa Cruz, CA, and accepted by the Editorial Board July 1, 2011 (received for review April 12, 2011) Carbonaceous meteorites deliver a variety of organic compounds chained three-carbon (3C) pyruvic acid through the eight-carbon to Earth that may have played a role in the origin and/or evolution (8C) 7-oxooctanoic acid and the branched 6C acid, 3-methyl- of biochemical pathways. Some apparently ancient and critical 4-oxopentanoic acid (β-methyl levulinic acid), Fig. 1, Table S1. metabolic processes require several compounds, some of which 2-methyl-4-oxopenanoic acid (α-methyl levulinic acid) is tenta- are relatively labile such as keto acids. Therefore, a prebiotic setting tively identified (i.e., identified by mass spectral interpretation for any such individual process would have required either a only). As a group, these keto acids are relatively unusual in that continuous distant source for the entire suite of intact precursor the ketone carbon is located in a terminal-acetyl group rather molecules and/or an energetic and compact local synthesis, parti- than at the second carbon as in most of the more biologically cularly of the more fragile members. -
Bacterial Metabolism of Glycine and Alanine David Paretsky Iowa State College
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1948 Bacterial metabolism of glycine and alanine David Paretsky Iowa State College Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Biochemistry Commons, and the Microbiology Commons Recommended Citation Paretsky, David, "Bacterial metabolism of glycine and alanine " (1948). Retrospective Theses and Dissertations. 13762. https://lib.dr.iastate.edu/rtd/13762 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. NOTE TO USERS This reproduction is the best copy available. UMI BAG1ERIAL METABOLISM OP GL^CIKE AND ALANINE by David Paretsky A Itieais Submitted to the Graduate Faculty for the Degree of DOCTOR OP PHILOSOPHY Major Subjects physiological Bacteriology Approved? Signature was redacted for privacy. In Charge of Major Work Signature was redacted for privacy. Heaa'of' "la'jo'r 'Departn^en t Signature was redacted for privacy. Dean or Graduate -Golleg^ Iowa State College 1948 UMI Number: DP12896 INFORMATION TO USERS The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleed-through, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. -
Cellular Respiration Process by Which Cells Transfer Energy from Food To
Cellular Respiration Process by which cells transfer energy from food to ATP Cells rely heavily on Oxygen Can be Aerobic or Anaerobic Brain cells cannot produce energy anaerobicly Heart Cells have a minimal ability to produce energy anaerobicly Glycolysis, Krebs cycle, Electron Transport Carb Metabolism Only food the can create energy through Anaerobic metabolism Preferred food of the body, uses least amount of oxygen Glucose- 6-carbon sugar C6H12O6 Break down= Glucose + Oxygen = Water + Carbon Dioxide + Energy Excess Glucose stored as Glycogen stored in the liver & muscles Stage 1- Glycolysis Prepares glucose to enter the next stage Converts Glucose to Pyruvic Acid (Aerobic) or Lactic Acid (Anaerobic) ATP is produced 2 ATP used in the first steps (Only 1 if glycogen) 2 ATP produced end steps 2 NAD FAD & NAD similar to a taxi (Transport Oxygen) 6 Carbon Glucose broken down to 2 3-carbon cells Lactic Acid- Glycogen (Anaerobic) Pyruvic acid- Glucose (Aerobic) Stage 2- Formation of Acetyl Coenzyme A Converts Pyruvate to Acetyl Coenzyme A No ATP is used or produced 2 NAD (4 NAD) Stage 3- Krebs Cycle Begins & ends with the same substance No ATP is used 2 ATP Made (2 Cells) Hydrogen’s spilt for Electron Transport 6 NAD Stage 4- Electron Transport System Hydrogen taken from FAD & NAD to make water Electrons are dropped off and then pick up- repeats 3 times One ATP for each for each pair of Hydrogen’s Each NAD makes 3ATP Each FAD makes 2 ATP Total Stage 1 – Glycolysis-2 ATP, NAD but can’t be used in skeletal muscle (FAD uses electron in skeletal -
"Changes in Pyruvic Acid Content and GPT Activity in Chilling-Sensitive
HORTSCIENCE 25(8):952-953. 1990. into -80C methanol (mixture of solid CO2 and methanol); the acid was then extracted with 0.6 M HPO3 at 0C. After adding 2,4- Changes in Pyruvic Acid Content and dinitrophenylhydrazine to the extraction, the mixture was allowed to stand for 3 hr at room GPT Activity in Chilling-sensitive and temperature in darkness. Finally, the hydra- zone produced was dissolved in 2 ml of ab- Nonsensitive Crops solute methanol. To separate and quantify the pyruvic acid in the keto acids, a 10-µl Hironobu Tsuchida and Cheng Dan-Hong aliquot of the solution was directly subjected Faculty of Agriculture, Kobe University, Rokkodai-cho, Nadaku, Kobe, to high-performance liquid chromatography Japan (HPLC) . A Gaskuro Kogyo (Tokyo) liquid chro- Kazuko Inoue matograph (Model-570B) equipped with a sampling valve with a 20-µl loop (Rheodyne Consumer Economic Research Institute, 6-28, 1-cho, Nakatsu, Model 7120) was used. The chromato- Ooyodo-ku, Osaka, Japan graphic column (4.0 i-d. × 250 mm) was of stainless steel and packed with Unicil Q- Nobuyuki Kozukue 30 (particle diameter 5 µm, Gaskuro Kog- Department of Home Economics, Kenmei Junior College, 68-Honmachi, yo). The UV detector was set-at 254 nm. A Himeji City, Japan mobile phase [50 chloroform : 5 n-butanol : 5 acetic acid : 50 water (by volume)] was Susumu Mizuno pumped through the column at a flow rate of 1 ml·min-1. The chart speed was adjusted Faculty of Agriculture, Kobe University, Rokkodai-cho, Nadaku, Kobe, -1 to 5 mm·min . Analytical-grade sodium Japan pyruvate was purchased from Wako Pure Additional index words. -
Pyruvic Acid
FT-N12450 Pyruvic acid Product Information Chemical name: Pyruvic acid, Sodium salt Other names: 2-oxopropanoic acid , α-ketopropionic acid, acetylformic acid, pyroracemic acid, Pyr Cat.# : N12450, 100 g N12451,250 g N12452, 1Kg Larger quantities: inquire Structure: CH3COCO2Na CAS: 127-17-3 Molecular Weight: 110.05 Storage: Room temperature, protected from moisture Safety: EU classification: Highly toxic (T+) ; Dangerous for the environment (N) R-phrases: R21, R26, R28, R32, R50, R53 S-Phrases: S1, S2, S28, S45, S60, S61 Test Specification/ Spécification Appearance: white white crystalline powder Solubility: In water (20%) Clear, colorless Purity: >99% Loss on drying: <0.5% Melting point: >320°C Contact your local distributor Uptima, powered by [email protected] P.1 FT-N12450 Physical datas Pyruvic acid is a colorless liquid with a smell similar to acetic acid. It is miscible with water, and soluble in ethanol and diethyl ether. Cell Biology role Pyruvate is an important chemical compound in biochemistry. It is even is suspected of providing the fertile basis for the formation of life.. Pyruvate is the output of the metabolism of glucose known as glycolysis. One molecule of glucose breaks down into two molecules of pyruvic acid, which are then used to provide further energy, in one of two ways. Provided that sufficient oxygen is available, pyruvic acid is converted into acetyl- coenzyme A, which is the main input for a series of reactions known as the Krebs cycle. Pyruvate is also converted to oxaloacetate by an anaplerotic reaction and then further broken down to carbon dioxide. The cycle is also called the citric acid cycle, because citric acid is one of the intermediate compounds formed during the reactions. -
The Role of Some of the Krebs Cycle Reactions in the Biosynthetic Functions of Thiobacillus Thioparus
AN ABSTRACT OF THE THESIS OF Gerald G. Still for the PhD in Chemistry (Name) (Degree) (Major) Date thesis is presented May 14, 1965 Title THE ROLE OF SOME OF THE KREBS CYCLE REACTIONS IN THE BIOSYNTHETIC FUNCTIONS OF THIOBACILLUS THIOPARUS Abstract approved Redacted for Privacy (Major professor) Aseptic radiorespirometry has been used to examine the utilization of external carbon sources by proliferat- ing Thiobacillus thioparus cells. These studies reveal that glucose, galactose, mannose, fructose, ribose, DL- glutamate, and L- aspartate were not utilized by this chemoautotrophic organism. However, it has been shown that trace amounts of acetate, glycine, DL- serine, DL- alanine, succinate and fumarate can be utilized by T. thioparus cells. To elucidate the nature of the biosynthetic pathways operative in this bacteria, proliferating cell cultures were allowed to metabolize specifically 14C labeled substrates. The resulting 14C labeled cells were sub- sequently hydrolyzed, their amino acids isolated and subjected to degradation experiments. Examination of the respective fates of the label in DL- alanine- 2 -14C, acetate- 1 -14C, or acetate -2 -14C in the cellular metabolism revealed that the Krebs Cycle path- way is not functioning as a respiratory mechanism in T. thioparus. However, most of the reactions of the Krebs Cycle pathway are involved in the biosynthesis of carbon skeletons for various amino acids. A CO2 fixa- tion pathway of the C3 +C1 type is instrumental in provid- ing C4 dicarboxylic acids and those amino acids derived therefrom. Acetate can be incorporated into a -keto- glutarate and those amino acids derived therefrom, but cannot be incorporated into the C4 dicarboxylic acids. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Transamination in Tumors, Fetal Tissues, and Regenerating Liver* Philip P
Transamination in Tumors, Fetal Tissues, and Regenerating Liver* Philip P. Cohen, M.D., and G. Leverne Hekhuis (From the Laboratory o~ Physiological Chemistry, Yale University School of Medicine, New Haven, Connecticut) (Received for publication June 9, I94I) von Euler and co-workers (22), on the basis of TISSUE SOURCES results of essentially qualitative experiments, first re- Tumors.--The mouse tumors employed in this in- ported that the transaminase activity ot~ tumors was vestigation were the following: low. These investigators, using Jensen sarcoma and normal muscle, measured the rate of disappearance of I. United States Public Health Service No. ~7-- oxaloacetic acid in the following reaction: originally described as a neuroepithelioma (20). 1 2. Sarcoma 37 .1 3. Yale No. xuan estrogen-induced ,) 1( + )-glutamic acid + oxaloacetic acid a mammary adenocarcinoma (5). 1 4. No. x5o9I-A - ~'b a-ketoglutaric acid + aspartic acid spontaneous mammary medullary adenocarcinoma In addition to studies of reaction I in tumors, Braun- (6) "1 5- No. 42--glioblastoma multiforme. 2 6. No. stein and Azarkh (2) studied the reaction: i o8--rhabdomyosarcoma. 2 The tumors were transplanted at regular intervals 2) glutamic acid+a-keto acid to insure a uniform supply. a-ketoglutaric acid + amino acid "-b- Fetal, kitten, and adult cat tissues.--Two pregnant cats provided the fetal tissue. The length of the preg- The amino acids investigated in the case of reaction nancy was uncertain, but was estimated to be in the 2b were the d- and l-forms of alanine, valine, leucine, last trimester in both instances. Hemihysterectomies and isoleucine. The rate of reaction za in which both were performed under nembutal anesthesia and 2 d(--)- and l(+)-glutamic acid were used, plus fetuses removed from each animal. -
Cellular Respiration Liberation of Energy by Oxidation of Food
Cellular Respiration Liberation of Energy by Oxidation of Food Respiration and Photosynthesis: Photosynthesis uses CO2 and H2O molecules to form C6H12O6 (glucose) and O2. Respiration is just the opposite of photosynthesis; it uses O2 to breakdown glucose into CO2 and H2O. It results in chemical cycling in biosphere. Respiration and Breathing: Respiration takes place in cells and needs O2 to breakdown food and releases the waste matter CO2. Breathing exchanges these gases between lungs and air. Overall equation for cellular respiration is: C6H1206 + O2 6CO2 + 6 H2O + ATP Glucose Oxygen Carbon Dioxide Water Energy Redox reactions: reduction-oxidation reactions. The gain of electrons during a chemical reaction is called Reduction. The loss of electrons during a chemical reaction is called Oxidation. Glucose is oxidized to 6CO2 and O2 is reduced to 6H2O during cellular respiration. During cellular respiration, glucose loses electrons and H, and O2 gains them. Energy and Food All living things need energy. Some living things can make their food from CO2 and H2O – Producers (plants, algae) Animals feeding on plants – herbivores (chipmunk) Animals feeding on animals – Carnivores (lion) Producers change solar energy to chemical energy of organic molecules – glucose, amino acids Animals and also plants break chemical bonds of sugar molecules and make ATP. Use ATP for all cellular functions 4 Main Step of Cellular Respiration Glycolysis: Glucose + 2NAD + 2ADP 2 Pyruvate + 2NADH + 2 ATP Preparatory Step: Pyruvate + NAD Acetyl-CoA + CO2 + NADH Krebs Cycle: Acetyl-CoA + NAD + FAD + ADP CO2 + NADH + FADH + ATP Electron Transport Chain: electrons of NADH + O2 ATP + H2O Cellular Respiration Aerobic Harvest of energy: is the main source of energy for most organisms. -
Mechanistic Study of Cysteine Dioxygenase, a Non-Heme
MECHANISTIC STUDY OF CYSTEINE DIOXYGENASE, A NON-HEME MONONUCLEAR IRON ENZYME by WEI LI Presented to the Faculty of the Graduate School of The University of Texas at Arlington in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY THE UNIVERSITY OF TEXAS AT ARLINGTON August 2014 Copyright © by Student Name Wei Li All Rights Reserved Acknowledgements I would like to thank Dr. Pierce for your mentoring, guidance and patience over the five years. I cannot go all the way through this without your help. Your intelligence and determination has been and will always be an example for me. I would like to thank my committee members Dr. Dias, Dr. Heo and Dr. Jonhson- Winters for the directions and invaluable advice. I also would like to thank all my lab mates, Josh, Bishnu ,Andra, Priyanka, Eleanor, you all helped me so I could finish my projects. I would like to thank the Department of Chemistry and Biochemistry for the help with my academic and career. At Last, I would like to thank my lovely wife and beautiful daughter who made my life meaningful and full of joy. July 11, 2014 iii Abstract MECHANISTIC STUDY OF CYSTEINE DIOXYGENASE A NON-HEME MONONUCLEAR IRON ENZYME Wei Li, PhD The University of Texas at Arlington, 2014 Supervising Professor: Brad Pierce Cysteine dioxygenase (CDO) is an non-heme mononuclear iron enzymes that catalyzes the O2-dependent oxidation of L-cysteine (Cys) to produce cysteine sulfinic acid (CSA). CDO controls cysteine levels in cells and is a potential drug target for some diseases such as Parkinson’s and Alzhermer’s. -
Serum Metabolite Profiles As Potential Biochemical Markers in Young
www.nature.com/scientificreports OPEN Serum metabolite profles as potential biochemical markers in young adults with community- acquired pneumonia cured by moxifoxacin therapy Bo Zhou1, Bowen Lou2,4, Junhui Liu3* & Jianqing She2,4* Despite the utilization of various biochemical markers and probability calculation algorithms based on clinical studies of community-acquired pneumonia (CAP), more specifc and practical biochemical markers remain to be found for improved diagnosis and prognosis. In this study, we aimed to detect the alteration of metabolite profles, explore the correlation between serum metabolites and infammatory markers, and seek potential biomarkers for young adults with CAP. 13 Eligible young mild CAP patients between the ages of 18 and 30 years old with CURB65 = 0 admitted to the respiratory medical department were enrolled, along with 36 healthy participants as control. Untargeted metabolomics profling was performed and metabolites including alcohols, amino acids, carbohydrates, fatty acids, etc. were detected. A total of 227 serum metabolites were detected. L-Alanine, 2-Hydroxybutyric acid, Methylcysteine, L-Phenylalanine, Aminoadipic acid, L-Tryptophan, Rhamnose, Palmitoleic acid, Decanoylcarnitine, 2-Hydroxy-3-methylbutyric acid and Oxoglutaric acid were found to be signifcantly altered, which were enriched mainly in propanoate and tryptophan metabolism, as well as antibiotic-associated pathways. Aminoadipic acid was found to be signifcantly correlated with CRP levels and 2-Hydroxy-3-methylbutyric acid and Palmitoleic acid with PCT levels. The top 3 metabolites of diagnostic values are 2-Hydroxybutyric acid(AUC = 0.90), Methylcysteine(AUC = 0.85), and L-Alanine(AUC = 0.84). The AUC for CRP and PCT are 0.93 and 0.91 respectively. -
Cysteamine: an Old Drug with New Potential
Drug Discovery Today Volume 18, Numbers 15/16 August 2013 REVIEWS POST SCREEN Cysteamine: an old drug with new potential Reviews 1,2 3 1,2,4 Martine Besouw , Rosalinde Masereeuw , Lambert van den Heuvel and 1,2 Elena Levtchenko 1 Department of Pediatric Nephrology, University Hospitals Leuven, Leuven, Belgium 2 Laboratory of Pediatrics, Department of Development & Regeneration, Catholic University Leuven, Belgium 3 Department of Pharmacology and Toxicology, Radboud University Nijmegen Medical Centre, Nijmegen Centre for Molecular Life Sciences, Nijmegen, The Netherlands 4 Laboratory for Genetic, Endocrine and Metabolic Disorders, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands Cysteamine is an amino thiol with the chemical formula HSCH2CH2NH2. Endogenously, cysteamine is derived from coenzyme A degradation, although its plasma concentrations are low. Most experience with cysteamine as a drug originates from the field of the orphan disease cystinosis, in which cysteamine is prescribed to decrease intralysosomal cystine accumulation. However, over the years, the drug has been used for several other applications both in vitro and in vivo. In this article, we review the different applications of cysteamine, ending with an overview of ongoing clinical trials for new indications, such as neurodegenerative disorders and nonalcoholic fatty liver disease (NAFLD). The recent development of an enteric-coated cysteamine formulation makes cysteamine more patient friendly and will extend its applicability for both old and new indications. Endogenous cysteamine production cysteine, it is oxidized into taurine by hypotaurine dehydrogenase Cysteamine (synonyms: b-mercaptoethylamine, 2-aminoetha- (Fig. 1b). Taurine is excreted either in urine, or in feces in the form nethiol, 2-mercaptoethylamine, decarboxycysteine, thioethano- of bile salts [3].