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NON-TIDAL BENTHIC MONITORING DATABASE: Version 3.5

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NON-TIDAL BENTHIC MONITORING DATABASE: Version 3.5 NON-TIDAL BENTHIC MONITORING DATABASE: Version 3.5 DATABASE DESIGN DOCUMENTATION AND DATA DICTIONARY 1 June 2013 Prepared for: United States Environmental Protection Agency Chesapeake Bay Program 410 Severn Avenue Annapolis, Maryland 21403 Prepared By: Interstate Commission on the Potomac River Basin 51 Monroe Street, PE-08 Rockville, Maryland 20850 Prepared for United States Environmental Protection Agency Chesapeake Bay Program 410 Severn Avenue Annapolis, MD 21403 By Jacqueline Johnson Interstate Commission on the Potomac River Basin To receive additional copies of the report please call or write: The Interstate Commission on the Potomac River Basin 51 Monroe Street, PE-08 Rockville, Maryland 20850 301-984-1908 Funds to support the document The Non-Tidal Benthic Monitoring Database: Version 3.0; Database Design Documentation And Data Dictionary was supported by the US Environmental Protection Agency Grant CB- CBxxxxxxxxxx-x Disclaimer The opinion expressed are those of the authors and should not be construed as representing the U.S. Government, the US Environmental Protection Agency, the several states or the signatories or Commissioners to the Interstate Commission on the Potomac River Basin: Maryland, Pennsylvania, Virginia, West Virginia or the District of Columbia. ii The Non-Tidal Benthic Monitoring Database: Version 3.5 TABLE OF CONTENTS BACKGROUND ................................................................................................................................................. 3 INTRODUCTION ............................................................................................................................................... 3 THE NON-TIDAL BENTHIC MONITORING DATA .............................................................................. 3 RELATIONAL DATABASE CONCEPTS ............................................................................................. 4 RELATIONAL DATABASE STRUCTURE ........................................................................................... 4 NON-TIDAL BENTHIC DATABASE STRUCTURE .......................................................................................... 7 PRIMARY DATA TABLES ................................................................................................................... 7 TAB_EVENT ........................................................................................................................... 7 TAB_HABITAT_ASSESSMENT ............................................................................................. 8 TAB_IBI_METRICS ................................................................................................................. 9 TAB_STATIONS ................................................................................................................... 10 TAB_RAREFACTION_COUNTS .......................................................................................... 11 TAB_TAXONOMIC_COUNT................................................................................................. 12 TAB_TAXONOMIC_QUATIFICATION ................................................................................. 13 TAB_WQ_DATA ................................................................................................................... 14 TAB_WAREHOUSE .............................................................................................................. 15 PRINCIPAL LOOK-UP TABLES ........................................................................................................ 16 TAB_AGENCY ...................................................................................................................... 16 TAB_CBP_MSTR .................................................................................................................. 17 TAB_CONVERT_TAXA ........................................................................................................ 18 TAB_ECO_REGIONS ........................................................................................................... 19 TAB_EVENT_TYPE .............................................................................................................. 18 TAB_FAMILY ........................................................................................................................ 19 TAB_FIPS ............................................................................................................................. 20 TAB_G_METHOD ................................................................................................................. 22 TAB_HABITAT_PARAMETERS ........................................................................................... 24 TAB_HABITAT_TYPE ........................................................................................................... 25 TAB_HUCS_12 ..................................................................................................................... 26 TAB_IBI_PARAMETER ........................................................................................................ 48 TAB_KARST ......................................................................................................................... 50 TAB_LABATORY .................................................................................................................. 51 TAB_LIFE_STAGE ............................................................................................................... 52 TAB_LL_DATUMS ................................................................................................................ 54 TAB_IBI_METHOD ............................................................................................................... 55 TAB_WQ_METHOD ............................................................................................................. 55 TAB_METHODS_BIO ........................................................................................................... 58 TAB_METHODS_HAB .......................................................................................................... 59 TAB_PARAMETER_WQ ....................................................................................................... 59 TAB_PROBLEM_CODE ....................................................................................................... 61 TAB_PROGRAM ................................................................................................................... 63 TAB_PROJECT .................................................................................................................... 64 TAB_QUALIFIERS ................................................................................................................ 66 TAB_REPORTING_PREVELANCE ..................................................................................... 67 TAB_ SAMPLE_ REPLICATE_TYPES ................................................................................. 68 TAB_SAMPLE_TYPES ......................................................................................................... 69 1 The Non-Tidal Benthic Monitoring Database: Version 3.5 TAB_SITE_TYPE .................................................................................................................. 69 TAB_UNITS .......................................................................................................................... 69 STORED INDICATOR SCRIPTS AND TEMPORARY DATA TABLES ............................................. 71 APPENDIX A. DATABASE ENTITY RELATIONSHIP DIAGRAM ................................................................. 72 APPENDIX B. THE MAINMODULEINDICATOR STORED PROCEDURE .................................................. 74 APPENDIX C. THE RARIFIEDMETRICS STORED PROCEDURE ............................................................. 99 2 The Non-Tidal Benthic Monitoring Database: Version 3.5 BACKGROUND In 1996, the Chesapeake Executive Counsel adopted the "Strategy for Increasing Basin-wide Public Access to Chesapeake Bay Information". This strategy calls for the Chesapeake Bay Program partners to develop the Chesapeake Bay Information Management System (CIMS). CIMS will electronically link a variety of information sources about the Bay and rivers and make this information available to anyone—from students, to scientists, to citizens groups—electronically through the Internet and World Wide Web. The information targeted by CIMS includes technical and public information, educational material, environmental indicators, policy documents and scientific data. As a result of the CIMS initiative, the Bay Program is working to establish a system of distributed databases. In the ideal system, a CBP database would be created and managed by the data originator, reside with the data originator, and made directly available from the data originator’s institution on an Internet server. This system has several advantages over the traditional single data repository. Primarily, the people with the most expertise and knowledge about the data, the originators, will manage the data. Additional advantages include reduced cost due to elimination of intermediate data handling at a central repository, and decreased time between collection and release of the data. The key to the success of a distributed data management system lies in the willingness of the data generators to take responsibility for the quality and maintenance for their data as well as and in their adherence to the established data
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