Sugar Beet, It 'Disease Rhizoctonia Root Rot, and Potential Biological Agents
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Genetic and Genomic Tools to Asssist Sugar Beet Improvement: the Value of the Crop Wild Relatives
PERSPECTIVE published: 06 February 2018 doi: 10.3389/fpls.2018.00074 Genetic and Genomic Tools to Asssist Sugar Beet Improvement: The Value of the Crop Wild Relatives Filipa Monteiro 1,2*, Lothar Frese 3, Sílvia Castro 4, Maria C. Duarte 1, Octávio S. Paulo 1, João Loureiro 4 and Maria M. Romeiras 1,2* 1 Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências Universidade de Lisboa, Lisboa, Portugal, 2 Linking Landscape, Environment, Agriculture and Food, Instituto Superior de Agronomia, Universidade de Lisboa, Lisboa, Portugal, 3 Institute for Breeding Research on Agricultural Crops, Julius Kühn-Institut, Federal Research Centre for Cultivated Plants (JKI), Quedlinburg, Germany, 4 Department of Life Sciences, Centre for Functional Ecology, Universidade de Coimbra, Coimbra, Portugal Sugar beet (Beta vulgaris L. ssp. vulgaris) is one of the most important European crops for both food and sugar production. Crop improvement has been developed to enhance productivity, sugar content or other breeder’s desirable traits. The introgression of traits from Crop Wild Relatives (CWR) has been done essentially for lessening biotic stresses Edited by: constraints, namely using Beta and Patellifolia species which exhibit disease resistance Piergiorgio Stevanato, characteristics. Several studies have addressed crop-to-wild gene flow, yet, for breeding Università degli Studi di Padova, Italy programs genetic variability associated with agronomically important traits remains Reviewed by: Martin Mascher, unexplored regarding abiotic factors. To accomplish such association from phenotype- Leibniz-Institut für Pflanzengenetik und to-genotype, screening for wild relatives occurring in habitats where selective pressures Kulturpflanzenforschung (IPK), are in play (i.e., populations in salt marshes for salinity tolerance; populations subjected Germany Chiara Broccanello, to pathogen attacks and likely evolved resistance to pathogens) are the most appropriate Università degli Studi di Padova, Italy streamline to identify causal genetic information. -
Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Tolerance of Vegetable Crops to Salinity M.C
Scientia Horticulturae 78 (1999) 5±38 Tolerance of vegetable crops to salinity M.C. Shannon*, C.M. Grieve U.S. Salinity Laboratory, Department of Agriculture, Agricultural Research Service, 450 W. Big Springs Road, Riverside, CA 92507, USA Abstract Global constraints on fresh water supplies and the need to dispose of agricultural, municipal, and industrial waste waters have intensified interest in water reuse options. In many instances, the value of the water is decreased solely because of its higher salt concentration. Although quantitative information on crop salt tolerance exists for over 130 crop species, there are many vegetables which lack definitive data. Vegetable crops are defined as herbaceous species grown for human consumption in which the edible portions consist of leaves, roots, hypocotyls, stems, petioles, and flower buds. The salt tolerance of vegetable species is important because the cash value of vegetables is usually high compared to field crops. In this review some general information is presented on how salinity affects plant growth and development and how different measurements of salinity in solution cultures, sand cultures, and field studies can be reconciled to a common basis. The salt tolerance of vegetables has been condensed and reported in a uniform format based on the best available data. Discrepancies and inconsistencies exist in some of the information due to differences in cultivars, environments, and experimental conditions. For a great number of species little or no useful information exists and there is an obvious need for research. Published by Elsevier Science B.V. Keywords: Salt tolerance; Ion composition Contents 1. Introduction ............................................................ 7 1.1. -
Fruiting Body Form, Not Nutritional Mode, Is the Major Driver of Diversification in Mushroom-Forming Fungi
Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi Marisol Sánchez-Garcíaa,b, Martin Rybergc, Faheema Kalsoom Khanc, Torda Vargad, László G. Nagyd, and David S. Hibbetta,1 aBiology Department, Clark University, Worcester, MA 01610; bUppsala Biocentre, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75005 Uppsala, Sweden; cDepartment of Organismal Biology, Evolutionary Biology Centre, Uppsala University, 752 36 Uppsala, Sweden; and dSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, 6726 Szeged, Hungary Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved October 16, 2020 (received for review December 22, 2019) With ∼36,000 described species, Agaricomycetes are among the and the evolution of enclosed spore-bearing structures. It has most successful groups of Fungi. Agaricomycetes display great di- been hypothesized that the loss of ballistospory is irreversible versity in fruiting body forms and nutritional modes. Most have because it involves a complex suite of anatomical features gen- pileate-stipitate fruiting bodies (with a cap and stalk), but the erating a “surface tension catapult” (8, 11). The effect of gas- group also contains crust-like resupinate fungi, polypores, coral teroid fruiting body forms on diversification rates has been fungi, and gasteroid forms (e.g., puffballs and stinkhorns). Some assessed in Sclerodermatineae, Boletales, Phallomycetidae, and Agaricomycetes enter into ectomycorrhizal symbioses with plants, Lycoperdaceae, where it was found that lineages with this type of while others are decayers (saprotrophs) or pathogens. We constructed morphology have diversified at higher rates than nongasteroid a megaphylogeny of 8,400 species and used it to test the following lineages (12). -
EC Directive 92/43 on the Conservation of Natural Habitats and of Wild Fauna and Flora Citation for Special Area of Conservation (SAC)
EC Directive 92/43 on the Conservation of Natural Habitats and of Wild Fauna and Flora Citation for Special Area of Conservation (SAC) Name: Chesil and the Fleet Unitary Authority/County: Dorset SAC status: Designated on 1 April 2005 Grid reference: SY630795 SAC EU code: UK0017076 Area (ha): 1631.63 Component SSSI: Chesil Beach and The Fleet SSSI, Portland Harbour Shore SSSI, West Dorset Coast SSSI Site description: The Fleet is the largest example of a lagoonal habitat in England and has features of both lagoonal inlets and percolation lagoons. It is bordered by the fossil shingle barrier beach structure of Chesil Beach, through which sea water percolates into the lagoon, but most of its water exchange occurs through the narrow channel that links it to Portland Harbour. A low freshwater input produces fully saline conditions throughout most of the Fleet, with reduced salinity occurring only in the west. The lagoon is extremely sheltered from wave action and has weak tidal streams, except in the eastern narrows and entrance channel. The tidal range is much smaller and temperature range far greater than on the open coast. The lagoon supports extensive populations of two species of eelgrass Zostera and three species of tasselweed Ruppia, including the rare spiral tasselweed R. cirrhosa, and a diverse fauna that includes a number of nationally rare and scarce species. The 28 km-long shingle bar of Chesil Beach, with the contiguous Portland Harbour shore, is an extensive representative of perennial vegetation of stony banks, and most of it is relatively undisturbed by human activities. Much of the shingle bar is subject to wash-over and percolation in storm conditions and is therefore sparsely vegetated. -
Expression Analysis of the Expanded Cercosporin Gene Cluster In
EXPRESSION ANALYSIS OF THE EXPANDED CERCOSPORIN GENE CLUSTER IN CERCOSPORA BETICOLA A Thesis Submitted to the Graduate Faculty of the North Dakota State University of Agriculture and Applied Science By Karina Anne Stott In Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE Major Department: Plant Pathology May 2018 Fargo, North Dakota North Dakota State University Graduate School Title Expression Analysis of the Expanded Cercosporin Gene Cluster in Cercospora beticola By Karina Anne Stott The Supervisory Committee certifies that this disquisition complies with North Dakota State University’s regulations and meets the accepted standards for the degree of MASTER OF SCIENCE SUPERVISORY COMMITTEE: Dr. Gary Secor Chair Dr. Melvin Bolton Dr. Zhaohui Liu Dr. Stuart Haring Approved: 5-18-18 Dr. Jack Rasmussen Date Department Chair ABSTRACT Cercospora leaf spot is an economically devastating disease of sugar beet caused by the fungus Cercospora beticola. It has been demonstrated recently that the C. beticola CTB cluster is larger than previously recognized and includes novel genes involved in cercosporin biosynthesis and a partial duplication of the CTB cluster. Several genes in the C. nicotianae CTB cluster are known to be regulated by ‘feedback’ transcriptional inhibition. Expression analysis was conducted in wild type (WT) and CTB mutant backgrounds to determine if feedback inhibition occurs in C. beticola. My research showed that the transcription factor CTB8 which regulates the CTB cluster expression in C. nicotianae also regulates gene expression in the C. beticola CTB cluster. Expression analysis has shown that feedback inhibition occurs within some of the expanded CTB cluster genes. -
Origin and Age of Australian Chenopodiaceae
ARTICLE IN PRESS Organisms, Diversity & Evolution 5 (2005) 59–80 www.elsevier.de/ode Origin and age of Australian Chenopodiaceae Gudrun Kadereita,Ã, DietrichGotzek b, Surrey Jacobsc, Helmut Freitagd aInstitut fu¨r Spezielle Botanik und Botanischer Garten, Johannes Gutenberg-Universita¨t Mainz, D-55099 Mainz, Germany bDepartment of Genetics, University of Georgia, Athens, GA 30602, USA cRoyal Botanic Gardens, Sydney, Australia dArbeitsgruppe Systematik und Morphologie der Pflanzen, Universita¨t Kassel, D-34109 Kassel, Germany Received 20 May 2004; accepted 31 July 2004 Abstract We studied the age, origins, and possible routes of colonization of the Australian Chenopodiaceae. Using a previously published rbcL phylogeny of the Amaranthaceae–Chenopodiaceae alliance (Kadereit et al. 2003) and new ITS phylogenies of the Camphorosmeae and Salicornieae, we conclude that Australia has been reached in at least nine independent colonization events: four in the Chenopodioideae, two in the Salicornieae, and one each in the Camphorosmeae, Suaedeae, and Salsoleae. Where feasible, we used molecular clock estimates to date the ages of the respective lineages. The two oldest lineages both belong to the Chenopodioideae (Scleroblitum and Chenopodium sect. Orthosporum/Dysphania) and date to 42.2–26.0 and 16.1–9.9 Mya, respectively. Most lineages (Australian Camphorosmeae, the Halosarcia lineage in the Salicornieae, Sarcocornia, Chenopodium subg. Chenopodium/Rhagodia, and Atriplex) arrived in Australia during the late Miocene to Pliocene when aridification and increasing salinity changed the landscape of many parts of the continent. The Australian Camphorosmeae and Salicornieae diversified rapidly after their arrival. The molecular-clock results clearly reject the hypothesis of an autochthonous stock of Chenopodiaceae dating back to Gondwanan times. -
Great Nutraceutical Potential of Bioactive Compounds from Beta Vulgaris Cicla and Rubra Paolino Ninfali1, Elena Antonini1
Nutrafoods (2018) 17:75-81 ORIGINAL RESEARCH DOI 10.17470/NF-018-1002-2 Received: February 21, 2018 Accepted: March 21, 2018 Great nutraceutical potential of bioactive compounds from Beta vulgaris cicla and rubra Paolino Ninfali1, Elena Antonini1 Correspondence to: Paolino Ninfali - [email protected] Beta vulgaris subsp. cicla (BVc, leaf beet) and Beta vulgaris var. rubra (BVr, red beetroot) belong to the Keywords Amaranthaceae family and have been used for centuries as food and medicinal plants. The main bioac- ABSTRACT Anticancer tive phytochemicals of BVr are the betalains, a group of water-soluble pigments derived from betalamic acid, which are divided into two classes: the yellow/orange-coloured betaxanthins (BX) and the red/ Anti-inflammatory violet-coloured betacyanins (BC). The seeds, leaves and roots of BVc are rich in phenolic acids and Antioxidants apigenin-derived flavonoids, namely vitexin, vitexin-2-O-rhamnoside (VOR) and vitexina-2-O-xyloside Betalains (XVX). We isolated BVc and BVr phytochemicals in our laboratory and tested them individually and in Nutraceutical products combination for their anticancer and anti-inflammatory activity. In cancer cells, vitexin flavonoids were Vitexin flavonoids able to induce intrinsic apoptosis, while betalains induced extrinsic apoptosis. Combinations of two or three molecules exhibited synergistic antioxidant, anti-inflammatory and anticancer activity, particularly towards hepatic, intestinal and urinary bladder tumours. Introduction also called chard or spinach beet and grown for its leaves, is an important economic crop in many regions of Italy. Beta vulgaris subsp. vulgaris is a herbaceous biennial plant Beta vulgaris var. rubra (BVr, red beetroot) is widely culti- belonging to the order of the Caryophyllales, in the fam- vated in Northern and Central Italy for its dark red, yellow ily of the Amaranthaceae, and in the Betoideae subfamily or white roots. -
South Gare Plant List 01July2019
South Gare Plant List - 1st July 2019 Scien9fic name English Name Achillea millefolium Yarrow Agros9s stolonifera Creeping Bent Alisma plantago-aqua9ca Water-plantain Alliaria pe9olata Garlic Mustard Allium vineale Crow Garlic Ammophila arenaria Marram Anacamp9s pyramidalis Pyramidal Orchid Anisantha sterilis Barren Brome Anthyllis vulneraria Kidney Vetch An9rrhinum major Snapdragon Arcum minus Lesser Burdock Armeria mari9ma Thri Arrhenatherum ela9us False Oat-grass Artemisa mari9ma Sea Wormwood Artemisa vulgaris Mugwort Asplenium adiantum-nigrum Black Spleenwort Aster tripolium Sea Aster Astragalus danicus Purple Milk-Vetch Atriplex hulmeana Stace p144 Atriplex prostrata x A.liVoralis Atriplex laciniata Frosted Orache Atriplex liVoralis Grass-leaved Orache Atriplex prostrata Spear-leaved Orache Bellis perennis Daisy Bergenia crassifolia Elephant's-ears Beta vulgaris Sea Beet Blackstonia perfoliata Yellow-wort Bolboschoenus mari9mus Sea Club-rush BriZa media Quaking-grass Bromus hordaceous So Brome Buddleia davidii BuVerfly-Bush Cakile mari9ma Sea Rocket Calystegia silva9ca Large Bindweed Campanula rotundifolia Harebell Capsella bursa-pastoris Shepherd's-purse Cardamine pratensis Cuckooflower Carduus nutans Musk Thistle Carex arenaria Sand Sedge Carex binerva Green ribbed Sedge Carex demissa Common Yellow Sedge Carex flacca Glaucous Sedge Carex hirta Hairy Sedge Carlina vulgaris Carline Thistle Catapodium marinum Sea Fern-grass !1 Catapodium rigidum Fern-grass Centaurea nigra Common Knapweed Centaurea scabiosa Greater Knapweed Centaurium -
Septal Pore Caps in Basidiomycetes Composition and Ultrastructure
Septal Pore Caps in Basidiomycetes Composition and Ultrastructure Septal Pore Caps in Basidiomycetes Composition and Ultrastructure Septumporie-kappen in Basidiomyceten Samenstelling en Ultrastructuur (met een samenvatting in het Nederlands) Proefschrift ter verkrijging van de graad van doctor aan de Universiteit Utrecht op gezag van de rector magnificus, prof.dr. J.C. Stoof, ingevolge het besluit van het college voor promoties in het openbaar te verdedigen op maandag 17 december 2007 des middags te 16.15 uur door Kenneth Gregory Anthony van Driel geboren op 31 oktober 1975 te Terneuzen Promotoren: Prof. dr. A.J. Verkleij Prof. dr. H.A.B. Wösten Co-promotoren: Dr. T. Boekhout Dr. W.H. Müller voor mijn ouders Cover design by Danny Nooren. Scanning electron micrographs of septal pore caps of Rhizoctonia solani made by Wally Müller. Printed at Ponsen & Looijen b.v., Wageningen, The Netherlands. ISBN 978-90-6464-191-6 CONTENTS Chapter 1 General Introduction 9 Chapter 2 Septal Pore Complex Morphology in the Agaricomycotina 27 (Basidiomycota) with Emphasis on the Cantharellales and Hymenochaetales Chapter 3 Laser Microdissection of Fungal Septa as Visualized by 63 Scanning Electron Microscopy Chapter 4 Enrichment of Perforate Septal Pore Caps from the 79 Basidiomycetous Fungus Rhizoctonia solani by Combined Use of French Press, Isopycnic Centrifugation, and Triton X-100 Chapter 5 SPC18, a Novel Septal Pore Cap Protein of Rhizoctonia 95 solani Residing in Septal Pore Caps and Pore-plugs Chapter 6 Summary and General Discussion 113 Samenvatting 123 Nawoord 129 List of Publications 131 Curriculum vitae 133 Chapter 1 General Introduction Kenneth G.A. van Driel*, Arend F. -
Plant Classification and Seeds
Ashley Pearson – Plant Classification and Seeds ● Green and Gorgeous Oxfordshire ● Cut flowers ● Small amounts of veg still grown and sold locally Different Classification Systems Classification by Life Cycle : Ephemeral (6-8 wks) Annual Biennial Perennial Classification by Ecology: Mesophyte, Xerophyte, Hydrophyte, Halophyte, Cryophyte Raunkiaers Life Form System: based on the resting stage Raunkiaers Life Form System Classification contd. Classification by Plant Growth Patterns Monocots vs. Dicots (NB. only applies to flowering plants - angiosperms) Binomial nomenclature e.g., Beetroot = Beta vulgaris Plantae, Angiosperms, Eudicots, Caryophyllales, Amaranthaceae, Betoideae, Beta, Beta vulgaris After morphological characters, scientists used enzymes and proteins to classify plants and hence to determine how related they were via evolution (phylogeny) Present day we use genetic data (DNA, RNA, mDNA, even chloroplast DNA) to produce phylogenetic trees Plant part modifications ● Brassica genus ● ● Roots (swede, turnips) ● Stems (kohl rabi) ● Leaves (cabbages, Brussels Sprouts-buds) ● Flowers (cauliflower, broccoli) ● Seeds (mustards, oil seed rape) Plant hormones / PGR's / phytohormones ● Chemicals present in very low concentrations that promote and influence the growth, development, and differentiation of cells and tissues. ● NB. differences to animal hormones! (no glands, no nervous system, no circulatory system, no specific mode of action) ● Not all plant cells respond to hormones, but those that do are programmed to respond at specific points in their growth cycle ● Five main classes of PGR's ● Abscisic acid (ABA) ● Role in abscission, winter bud dormancy (dormin) ● ABA-mediated signalling also plays an important part in plant responses to environmental stress and plant pathogens ● ABA is also produced in the roots in response to decreased water potential. -
A Synopsis of Chenopodiaceae Subfam. Betoideae and Notes on the Taxonomy of Beta
Willdenowia 36 – 2006 9 GUDRUN KADEREIT, SANDRA HOHMANN & JOACHIM W. KADEREIT A synopsis of Chenopodiaceae subfam. Betoideae and notes on the taxonomy of Beta Abstract Kadereit, G., Hohmann, S. & Kadereit, J. W.: A synopsis of Chenopodiaceae subfam. Betoideae and notes on the taxonomy of Beta. – Willdenowia 36 (Special Issue): 9-19. – ISSN 0511-9618; © 2006 BGBM Berlin-Dahlem. doi:10.3372/wi.36.36101 (available via http://dx.doi.org/) A synopsis of the phylogeny and systematics of subfamily Betoideae of the Chenopodiaceae is pro- vided and a modified subfamilial classification proposed. Betoideae contain five or six genera, i.e. Beta, Patellifolia, Aphanisma, Oreobliton and Hablitzia. The inclusion of Acroglochin in Betoideae is not clearly resolved by molecular evidence. The five genera (excl. Acroglochin) fall into two clades. These are Beteae with Beta only, and Hablitzieae with the remaining four genera. Of these four genera, Patellifolia formerly has been regarded as a section of Beta (B. sect. Procumbentes). The closer rela- tionship of Patellifolia to Hablitzieae rather than to Beta is supported not only by molecular but also by flower morphological characters. Molecular evidence, in part newly generated, suggests that Beta can be divided into two well-supported groups. These are B. sect. Corollinae and B. sect. Beta. The often recognized unispecific B. sect. Nanae should be included in B. sect. Corollinae.InB. sect. Beta, proba- bly only two species, B. macrocarpa and B. vulgaris, should be recognized. Key words: angiosperms, beets, Patellifolia, phylogenetic systematics, ITS, morphology. Introduction The Betoideae are a small subfamily of the Amaranthaceae/Chenopodiaceae alliance, comprising between 11 and 16 species in five genera, dependent mainly on the classification of Beta L.