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Unfolding the Secrets of Coral–Algal Symbiosis
The ISME Journal (2015) 9, 844–856 & 2015 International Society for Microbial Ecology All rights reserved 1751-7362/15 www.nature.com/ismej ORIGINAL ARTICLE Unfolding the secrets of coral–algal symbiosis Nedeljka Rosic1, Edmund Yew Siang Ling2, Chon-Kit Kenneth Chan3, Hong Ching Lee4, Paulina Kaniewska1,5,DavidEdwards3,6,7,SophieDove1,8 and Ove Hoegh-Guldberg1,8,9 1School of Biological Sciences, The University of Queensland, St Lucia, Queensland, Australia; 2University of Queensland Centre for Clinical Research, The University of Queensland, Herston, Queensland, Australia; 3School of Agriculture and Food Sciences, The University of Queensland, St Lucia, Queensland, Australia; 4The Kinghorn Cancer Centre, Garvan Institute of Medical Research, Sydney, New South Wales, Australia; 5Australian Institute of Marine Science, Townsville, Queensland, Australia; 6School of Plant Biology, University of Western Australia, Perth, Western Australia, Australia; 7Australian Centre for Plant Functional Genomics, The University of Queensland, St Lucia, Queensland, Australia; 8ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, St Lucia, Queensland, Australia and 9Global Change Institute and ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, St Lucia, Queensland, Australia Dinoflagellates from the genus Symbiodinium form a mutualistic symbiotic relationship with reef- building corals. Here we applied massively parallel Illumina sequencing to assess genetic similarity and diversity among four phylogenetically diverse dinoflagellate clades (A, B, C and D) that are commonly associated with corals. We obtained more than 30 000 predicted genes for each Symbiodinium clade, with a majority of the aligned transcripts corresponding to sequence data sets of symbiotic dinoflagellates and o2% of sequences having bacterial or other foreign origin. -
The Earliest Diverging Extant Scleractinian Corals Recovered by Mitochondrial Genomes Isabela G
www.nature.com/scientificreports OPEN The earliest diverging extant scleractinian corals recovered by mitochondrial genomes Isabela G. L. Seiblitz1,2*, Kátia C. C. Capel2, Jarosław Stolarski3, Zheng Bin Randolph Quek4, Danwei Huang4,5 & Marcelo V. Kitahara1,2 Evolutionary reconstructions of scleractinian corals have a discrepant proportion of zooxanthellate reef-building species in relation to their azooxanthellate deep-sea counterparts. In particular, the earliest diverging “Basal” lineage remains poorly studied compared to “Robust” and “Complex” corals. The lack of data from corals other than reef-building species impairs a broader understanding of scleractinian evolution. Here, based on complete mitogenomes, the early onset of azooxanthellate corals is explored focusing on one of the most morphologically distinct families, Micrabaciidae. Sequenced on both Illumina and Sanger platforms, mitogenomes of four micrabaciids range from 19,048 to 19,542 bp and have gene content and order similar to the majority of scleractinians. Phylogenies containing all mitochondrial genes confrm the monophyly of Micrabaciidae as a sister group to the rest of Scleractinia. This topology not only corroborates the hypothesis of a solitary and azooxanthellate ancestor for the order, but also agrees with the unique skeletal microstructure previously found in the family. Moreover, the early-diverging position of micrabaciids followed by gardineriids reinforces the previously observed macromorphological similarities between micrabaciids and Corallimorpharia as -
First Records of the Sea Anemones Stichodactyla Tapetum
Turkish Journal of Zoology Turk J Zool (2015) 39: 432-437 http://journals.tubitak.gov.tr/zoology/ © TÜBİTAK Research Article doi:10.3906/zoo-1403-50 First records of the sea anemones Stichodactyla tapetum and Stichodactyla haddoni (Anthozoa: Actiniaria: Stichodactylidae) from the southeast of Iran, Chabahar (Sea of Oman) Gilan ATTARAN-FARIMAN*, Pegah JAVID Department of Marine Biology, Faculty of Marine Sciences, Chabahar Maritime University, Chabahar, Iran Received: 26.03.2014 Accepted: 28.08.2014 Published Online: 04.05.2015 Printed: 29.05.2015 Abstract: Sea anemones (order Actiniaria) are among the most widespread invertebrates in the tropical waters. The anthozoans Stichodactyla haddoni (Saville-Kent, 1893) and Stichodactyla tapetum (Hemprich & Ehrenberg in Ehrenberg, 1834) (family Stichodactylidae) were reported for the first time from the southeastern coast of Iran, Chabahar Bay, Tiss zone. The specimens of S. haddoni and S. tapetum were collected by hand from the intertidal zone of sand and rock substrates in April 2012. The samples characteristics were morphologically studied in the field and laboratory. This study presents a new locality record and information about S. haddoni and S. tapetum found in this part of the tropical sea. Key words: Exocoelic tentacles, endocoelic tentacles, tropical sea, morphological identification, symbiotic life 1. Introduction crustaceans like crabs and shrimps (Khan et al., 2004; The order Actiniaria Hertwig, 1882 (phylum Cnidaria), Katwate and Sanjeevi, 2011, Nedosyko et al., 2014), but with 46 families, includes solitary polyps with soft bodies there has been no report from Stichodactyla tapetum and nonpinnate tentacles (Daly et al., 2007). The family hosting anemonefish (Fautin et al., 2008). -
Sex, Polyps, and Medusae: Determination and Maintenance of Sex in Cnidarians†
e Reviewl Article Sex, Polyps, and Medusae: Determination and maintenance of sex in cnidarians† Runningc Head: Sex determination in Cnidaria 1* 1* i Stefan Siebert and Celina E. Juliano 1Department of Molecular and Cellular Biology, University of California, Davis, CA t 95616, USA *Correspondence may be addressed to [email protected] or [email protected] r Abbreviations:GSC, germ line stem cell; ISC, interstitial stem cell. A Keywords:hermaphrodite, gonochorism, Hydra, Hydractinia, Clytia Funding: NIH NIA 1K01AG044435-01A1, UC Davis Start Up Funds Quote:Our ability to unravel the mechanisms of sex determination in a broad array of cnidariansd requires a better understanding of the cell lineage that gives rise to germ cells. e †This article has been accepted for publication and undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which t may lead to differences between this version and the Version of Record. Please cite this article as doi: [10.1002/mrd.22690] p e Received 8 April 2016; Revised 9 August 2016; Accepted 10 August 2016 c Molecular Reproduction & Development This article is protected by copyright. All rights reserved DOI 10.1002/mrd.22690 c This article is protected by copyright. All rights reserved A e l Abstract Mechanisms of sex determination vary greatly among animals. Here we survey c what is known in Cnidaria, the clade that forms the sister group to Bilateria and shows a broad array of sexual strategies and sexual plasticity. This observed diversity makes Cnidariai a well-suited taxon for the study of the evolution of sex determination, as closely related species can have different mechanisms, which allows for comparative studies.t In this review, we survey the extensive descriptive data on sexual systems (e.g. -
Host-Specialist Lineages Dominate the Adaptive Radiation of Reef Coral Endosymbionts
ORIGINAL ARTICLE doi:10.1111/evo.12270 HOST-SPECIALIST LINEAGES DOMINATE THE ADAPTIVE RADIATION OF REEF CORAL ENDOSYMBIONTS Daniel J. Thornhill,1 Allison M. Lewis,2 Drew C. Wham,2 and Todd C. LaJeunesse2,3 1Department of Conservation Science and Policy, Defenders of Wildlife, 1130 17th Street NW, Washington, DC 20007 2Department of Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802 3E-mail: [email protected] Received April 8, 2013 Accepted September 4, 2013 Data Archived: Dryad doi: 10.5061/dryad.2247c Bursts in species diversification are well documented among animals and plants, yet few studies have assessed recent adaptive radiations of eukaryotic microbes. Consequently, we examined the radiation of the most ecologically dominant group of endosym- biotic dinoflagellates found in reef-building corals, Symbiodinium Clade C, using nuclear ribosomal (ITS2), chloroplast (psbAncr), and multilocus microsatellite genotyping. Through a hierarchical analysis of high-resolution genetic data, we assessed whether ecologically distinct Symbiodinium, differentiated by seemingly equivocal rDNA sequence differences, are independent species lin- eages. We also considered the role of host specificity in Symbiodinium speciation and the correspondence between endosymbiont diversification and Caribbean paleo-history. According to phylogenetic, biological, and ecological species concepts, Symbiodinium Clade C comprises many distinct species. Although regional factors contributed to population-genetic structuring of these lineages, Symbiodinium diversification was mainly driven by host specialization. By combining patterns of the endosymbiont’s host speci- ficity, water depth distribution, and phylogeography with paleo-historical signals of climate change, we inferred that present-day species diversity on Atlantic coral reefs stemmed mostly from a post-Miocene adaptive radiation. -
Draft Genomes of the Corallimorpharians Amplexidiscus Fenestrafer and Discosoma Sp
Draft genomes of the corallimorpharians Amplexidiscus fenestrafer and Discosoma sp Item Type Article Authors Wang, Xin; Liew, Yi Jin; Li, Yong; Zoccola, Didier; Tambutte, Sylvie; Aranda, Manuel Citation Wang X, Liew YJ, Li Y, Zoccola D, Tambutte S, et al. (2017) Draft genomes of the corallimorpharians Amplexidiscus fenestrafer and Discosoma sp. Molecular Ecology Resources. Available: http://dx.doi.org/10.1111/1755-0998.12680. Eprint version Post-print DOI 10.1111/1755-0998.12680 Publisher Wiley Journal Molecular Ecology Resources Rights This is the peer reviewed version of the following article: Draft genomes of the corallimorpharians Amplexidiscus fenestrafer and Discosoma sp., which has been published in final form at http://doi.org/10.1111/1755-0998.12680. This article may be used for non-commercial purposes in accordance With Wiley Terms and Conditions for self-archiving. Download date 24/09/2021 17:38:22 Link to Item http://hdl.handle.net/10754/623260 DR. MANUEL ARANDA LASTRA (Orcid ID : 0000-0001-6673-016X) Article type : Resource Article Draft genomes of the corallimorpharians Amplexidiscus fenestrafer and Discosoma sp. Running title: Draft genomes of two Corallimorpharia Xin Wang1, Yi Jin Liew1, Yong Li1, Didier Zoccola2, Sylvie Tambutte2, Manuel Aranda1,* 1King Abdullah University of Science and Technology (KAUST), Red Sea Research Center (RSRC), Article Biological and Environmental Sciences & Engineering Division (BESE), Thuwal, 23955-6900, Saudi Arabia 2Centre Scientifique de Monaco, 8 quai Antoine Ier, Monaco, 98000, Monaco *Correspondence: Manuel Aranda Lastra, Red Sea Research Center, King Abdullah University of Science and Technology, 4799 KAUST, Thuwal 23955, Saudi Arabia Phone: +966 544 700 661 E-mail: [email protected] Keywords: Corallimorpharia, naked corals, Amplexidiscus fenestrafer, Discosoma sp. -
University of Southampton Research Repository
University of Southampton Research Repository Copyright © and Moral Rights for this thesis and, where applicable, any accompanying data are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis and the accompanying data cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content of the thesis and accompanying research data (where applicable) must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holder/s. When referring to this thesis and any accompanying data, full bibliographic details must be given, e.g. Thesis: Author (Year of Submission) "Full thesis title", University of Southampton, name of the University Faculty or School or Department, PhD Thesis, pagination. Data: Author (Year) Title. URI [dataset] UNIVERSITY OF SOUTHAMPTON FACULTY OF NATURAL AND ENVIRONMENTAL SCIENCES School of Ocean and Earth Science Fluorescence on Coral Reefs by Elena Bollati Thesis for the degree of Doctor of Philosophy April 2018 A Claudia e Gabriella, Che mi hanno insegnato ad imparare E a non temere le alghe ballerine To Claudia and Gabriella, Who taught me to learn And not to fear the dancing seaweeds UNIVERSITY OF SOUTHAMPTON ABSTRACT FACULTY OF NATURAL AND ENVIRONMENTAL SCIENCES Ocean and Earth Sciences Thesis for the degree of Doctor of Philosophy FLUORESCENCE ON CORAL REEFS by Elena Bollati Coral reefs are highly biodiverse ecosystems and provide vital resources for the human population. Due to increasing pressure by climate change and local stressors, these ecosystems currently face a global crisis. -
Spectral Diversity of Fluorescent Proteins from the Anthozoan Corynactis Californica
Mar Biotechnol (2008) 10:328–342 DOI 10.1007/s10126-007-9072-7 ORIGINAL ARTICLE Spectral Diversity of Fluorescent Proteins from the Anthozoan Corynactis californica Christine E. Schnitzler & Robert J. Keenan & Robert McCord & Artur Matysik & Lynne M. Christianson & Steven H. D. Haddock Received: 7 September 2007 /Accepted: 19 November 2007 /Published online: 11 March 2008 # Springer Science + Business Media, LLC 2007 Abstract Color morphs of the temperate, nonsymbiotic three to four distinct genetic loci that code for these colors, corallimorpharian Corynactis californica show variation in and one morph contains at least five loci. These genes pigment pattern and coloring. We collected seven distinct encode a subfamily of new GFP-like proteins, which color morphs of C. californica from subtidal locations in fluoresce across the visible spectrum from green to red, Monterey Bay, California, and found that tissue– and color– while sharing between 75% to 89% pairwise amino-acid morph-specific expression of at least six different genes is identity. Biophysical characterization reveals interesting responsible for this variation. Each morph contains at least spectral properties, including a bright yellow protein, an orange protein, and a red protein exhibiting a “fluorescent timer” phenotype. Phylogenetic analysis indicates that the Christine E. Schnitzler and Robert J. Keenan contributed equally to FP genes from this species evolved together but that this work. diversification of anthozoan fluorescent proteins has taken Data deposition footnote: -
Bleaching of the Cnidarian-Dinoflagellate Symbiosis: Aspects of Innate Immunity and the Role of Nitric Oxide
Bleaching of the Cnidarian-Dinoflagellate Symbiosis: Aspects of Innate Immunity and The Role of Nitric Oxide Thomas D. Hawkins A thesis submitted to the Victoria University of Wellington in fulfilment of the requirements for the degree of Doctor of Philosophy in Science Victoria University of Wellington 2013 I II Abstract Driven by global warming and the increasing frequency of high temperature anomalies, the collapse of the cnidarian-dinoflagellate symbiosis (known as "bleaching" due to the whitening of host tissues) is contributing to worldwide coral reef decline. Much is known about the consequences of bleaching, but despite over 20 years of effort, we still know little about the physiological mechanisms involved. This is particularly true when explaining the differential susceptibility of coral hosts and their algal partners (genus Symbiodinium) to rising temperatures. Work carried out over the past 10 years suggests that bleaching may represent an innate immune-like host response to dysfunctional symbionts. This response involves the synthesis of nitric oxide (NO), a signalling molecule widely dispersed throughout the tree of life and implicated in diverse cellular phenomena. However, the source(s) of NO in the cnidarian-dinoflagellate association have been the subject of debate, and almost nothing is known of the capacity for differential NO synthesis among different host species or symbiont types. The aim of this study was to elucidate the role of NO in the temperature-induced breakdown of the cnidarian-dinoflagellate symbiosis -
Character Evolution in Light of Phylogenetic Analysis and Taxonomic Revision of the Zooxanthellate Sea Anemone Families Thalassianthidae and Aliciidae
CHARACTER EVOLUTION IN LIGHT OF PHYLOGENETIC ANALYSIS AND TAXONOMIC REVISION OF THE ZOOXANTHELLATE SEA ANEMONE FAMILIES THALASSIANTHIDAE AND ALICIIDAE BY Copyright 2013 ANDREA L. CROWTHER Submitted to the graduate degree program in Ecology and Evolutionary Biology and the Graduate Faculty of the University of Kansas in partial fulfillment of the requirements for the degree of Doctor of Philosophy. ________________________________ Chairperson Daphne G. Fautin ________________________________ Paulyn Cartwright ________________________________ Marymegan Daly ________________________________ Kirsten Jensen ________________________________ William Dentler Date Defended: 25 January 2013 The Dissertation Committee for ANDREA L. CROWTHER certifies that this is the approved version of the following dissertation: CHARACTER EVOLUTION IN LIGHT OF PHYLOGENETIC ANALYSIS AND TAXONOMIC REVISION OF THE ZOOXANTHELLATE SEA ANEMONE FAMILIES THALASSIANTHIDAE AND ALICIIDAE _________________________ Chairperson Daphne G. Fautin Date approved: 15 April 2013 ii ABSTRACT Aliciidae and Thalassianthidae look similar because they possess both morphological features of branched outgrowths and spherical defensive structures, and their identification can be confused because of their similarity. These sea anemones are involved in a symbiosis with zooxanthellae (intracellular photosynthetic algae), which is implicated in the evolution of these morphological structures to increase surface area available for zooxanthellae and to provide protection against predation. Both -
On the Classification of Actiniaria
On the Classification of Actiniaria. Part II.—Consideration of the whole group and its relationships, with special reference to forms not treated in Part I.1 By T. A. Stephenson, M.Sc, University College of Wales, Aberystwyth. With 20 Text-figurea. CONTENTS. PAGE 1. INTRODUCTION 493 2. BRIEF HISTORICAL SECTION . 497 3. DISCUSSION or CHARACTERS TO BE TTSED IN CLASSIFICATION . 499 4. SPECIAL DISCUSSIONS AND OUTLINE or NEW SCHEME . 505 5. EVOLUTIONARY SUGGESTIONS ....... 553 6. SUMMARY . 566 7. SHORT GLOSSARY 572 1. INTRODUCTION. IT has been necessary, on account of the length of the present paper, to confine Part II to discussions ; the definitions of families and genera involved, on the lines of those already- given in Part I, will be printed in another issue of this Journal as Part III, which will also contain a list of literature and an index to genera covering Parts II and III. The list of literature will be additional to that printed in Part I, and any numbers given in brackets in the following pages will refer to the two lists as one whole. Part I dealt with a relatively limited and compact group of 1 Part I was published in Vol. 64 of this Journal. NO. 260 L 1 494 • T. A. STEPHENSON anemones in a fairly detailed way ; the residue of forms is much larger, and there will not be space available in Part II for as much detail. I have not set apart a section of the paper as a criticism of the classification I wish to modify, as it has economized space to let objections emerge here and there in connexion with the individual changes suggested. -
Investigating Physiological Variability Across Different
INVESTIGATING PHYSIOLOGICAL VARIABILITY ACROSS DIFFERENT ALGAL AND CNIDARIAN SYMBIOSES: POSSIBLE IMPLICATIONS FOR CLIMATE CHANGE by Kenneth D. Hoadley A dissertation submitted to the Faculty of the University of Delaware in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Marine Studies Summer 2016 © 2016 Kenneth D. Hoadley All Rights Reserved ProQuest Number: 10191664 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. ProQuest 10191664 Published by ProQuest LLC ( 2016 ). Copyright of the Dissertation is held by the Author. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code Microform Edition © ProQuest LLC. ProQuest LLC. 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, MI 48106 - 1346 INVESTIGATING PHYSIOLOGICAL VARIABILITY ACROSS DIFFERENT ALGAL AND CNIDARIAN SYMBIOSES: POSSIBLE IMPLICATIONS FOR CLIMATE CHANGE by Kenneth D. Hoadley Approved: __________________________________________________________ Mark A. Moline, Ph.D. Director of the School of Marine Science and Policy Approved: __________________________________________________________ Mohsen Badiey, Ph.D. Acting Dean of the College of Earth, Ocean, and Environment Approved: __________________________________________________________ Ann L. Ardis, Ph.D. Senior Vice Provost for Graduate and Professional Education I certify that I have read this dissertation and that in my opinion it meets the academic and professional standard required by the University as a dissertation for the degree of Doctor of Philosophy.