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General Characteristics of the Human Bacterial Species Isolated From General characteristics of the human bacterial species isolated from 2015 to 17 April 2018 along with its classification based on oxygen tolerance (0 being able to tolerate oxygen and 1 strictly anaerobic), risk group, potential pathogenicity and the PMID of it article. A: New species isolated by culturomics approach, but not in the gut; B: Species isolated not by culturomics nor in the gut; C: New species isolated not by culturomics; D: Species isolated by routine culture in our lab; E: Species isolated in the human gut by culturomics; F: New species isolated in the human gut by culturomics; G: Species isolated in the human gut and not by culturomics. Catego Oxygen Risk Pathogene Name rie tolerance Group city PMID unclassifi Acidaminococcus massiliensis F 1 ed Unkown 28018604 unclassifi Acidaminococcus timonensis F 1 ed Unkown 27819657 Actinomyces unclassifi bouchesdurhonensis F 0 ed Unkown 27819657 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces culturomici A 0 ed Unkown 7.12.008 unclassifi Actinomyces ihuae F 0 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.humic.20 Actinomyces mediterranea F 0 ed Unkown 17.01.001 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces minihominis F 0 ed Unkown 8.03.006 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces oralis A 0 ed Unkown 7.12.007 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces pacaensis A 0 ed Unkown 7.12.006 unclassifi Actinomyces phoceensis F 0 ed Unkown 27819657 unclassifi Actinomyces provencensis F 0 ed Unkown 27819657 unclassifi Clinical Actinomyces urinae A 0 ed case 27358739 unclassifi Actinotignum timonense A 1 ed Unkown 28203375 unclassifi Africanibacillus massiliensis F 1 ed Unkown 27408735 unclassifi Alistipes inops F 1 ed Unkown 26377180 unclassifi Alistipes massiliensis F 1 ed Unkown 27819657 unclassifi Alistipes phoceensis F 1 ed Unkown 27819657 unclassifi Alistipes provencensis F 1 ed Unkown 27819657 unclassifi Anaerococcus jeddahensis F 1 ed Unkown 27819657 Anaerococcus unclassifi http://dx.doi.org/10.1016/j.nmni.201 mediterraneensis A 1 ed Unkown 7.02.007 Anaerococcus unclassifi urinomassiliensis A 1 ed Unkown 27408746 unclassifi Anaerofustis massiliensis F 1 ed Unkown 27819657 Anaeromassilibacillus unclassifi senegalensis F 1 ed Unkown 27819657 unclassifi Anaerosalibacter timonensis F 1 ed Unkown 27819657 unclassifi Anaerotruncus massiliensis F 1 ed Unkown 27819657 Anaerotruncus rubinfantis F 1 unclassifi Unkown http://dx.doi.org/10.1016/j.nmni.201 ed 7.02.004 unclassifi Angelakisella massiliensis F 1 ed Unkown 28203377 unclassifi Arabia massiliensis F 0 ed Unkown 27819657 Arcanobacterium unclassifi urinimassiliense A 1 ed Unkown 28480045 Bacilliculturomica Unclassifi massiliensis F 1 ed Unkown 28794883 unclassifi Bacillus caccae F 0 ed Unkown 28702201 unclassifi Bacillus dakarensis F 0 ed Unkown 28280541 Unclassifi Bacillus kwashiorkori F 0 ed Unkown 29076642 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Bacillus marasmi F 0 ed Unkown 7.02.004 unclassifi Bacillus massilinigeriensis F 0 ed Unkown 27819657 unclassifi Bacillus massiliogabonensis F 0 ed Unkown 27830079 unclassifi Bacillus mediterraneensis F 0 ed Unkown 27408743 unclassifi Bacillus phoceensis F 0 ed Unkown 27819657 unclassifi Bacillus sinesaloumensis F 0 ed Unkown 28280541 unclassifi Bacillus testis F 0 ed Unkown 27819657 Unclassifi Bacillus tuaregi F 0 ed Unkown 28706723 Bacteroides unclassifi http://dx.doi.org/10.1016/j.humic.20 bouchesdurhonensis F 1 ed Unkown 17.01.003 unclassifi http://dx.doi.org/10.1016/j.humic.20 Bacteroides congonensis F 1 ed Unkown 16.11.004 Unclassifi Bacteroides cutis A 1 ed Unkown 29556403 unclassifi Bacteroides ihuae A 1 ed Unkown 28289545 unclassifi Bacteroides massiliae A 1 ed Unkown 28859350 unclassifi Bacteroides mediterraneensis F 1 ed Unkown 27819657 unclassifi Bacteroides neonati F 1 ed Unkown 27819657 unclassifi Bacteroides phoceense F 1 ed Unkown 27819657 unclassifi Bariatricus massiliensis F 1 ed Unkown 27819657 unclassifi Beduinella massiliensis F 1 ed Unkown 27819657 unclassifi Beduinibacter massiliensis F 1 ed Unkown 27819657 unclassifi Bittarella massiliensis F 1 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Blautia marasmi F 1 ed Unkown 7.02.004 unclassifi Blautia massiliensis F 1 ed Unkown 27819657 unclassifi Blautia phoceensis F 1 ed Unkown 27819657 unclassifi Blautia provencensis F 1 ed Unkown 28702201 unclassifi Blautia timonensis F 1 ed Unkown 27819657 unclassifi Brachybacterium massiliense F 0 ed Unkown 27819657 unclassifi Bradyrhizobium massiliensis A 0 ed Yes 28859350 Unclassifi Brevibacterium ihuae F 0 ed Unkown 29204284 unclassifi Brevibacterium phoceense F 0 ed Unkown 27819657 unclassifi Butyricimonas phoceensis F 1 ed Unkown 27819657 unclassifi Butyricimonas timonensis F 1 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Caecibacter massiliensis F 1 ed Unkown 6.11.021 unclassifi Caecumella massiliensis F 1 ed Unkown 27819657 unclassifi Cellulomonas timonensis F 0 ed Unkown 27819657 unclassifi Christensenella massiliensis F 1 ed Unkown 27819657 unclassifi Christensenella timonensis F 1 ed Unkown 27819657 Chryseobacterium unclassifi timonianum A 0 ed Unkown 28509971 Unclassifi https://doi.org/10.1016/j.nmni.201 Citricoccus massiliensi A 0 ed Unkown 8.02.004 unclassifi Clostridium beduini F 1 ed Unkown 27819657 Clostridium unclassifi bouchesdurhonense F 1 ed Unkown 27819657 unclassifi Clostridium culturomicum F 1 ed Unkown 28702201 unclassifi Clostridium marseillense F 1 ed Unkown 27819657 Clostridium unclassifi massilidielmoense F 1 ed Unkown 27366325 Clostridium unclassifi massiliosenegalense F 1 ed Unkown 27595004 unclassifi Clostridium mediterraneense F 1 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Clostridium merdae F 1 ed Unkown 7.02.005 Unclassifi https://doi.org/10.1016/j.nmni.201 Clostridium minihomine F 1 ed Unkown 8.03.005 unclassifi Clostridium niameyense F 1 ed Unkown 27819657 unclassifi Clostridium nigeriense F 1 ed Unkown 27819657 unclassifi Clostridium phoceense F 1 ed Unkown 27819657 unclassifi Clostridium touaregense F 1 ed Unkown 27819657 unclassifi Colibacter massiliensis F 0 ed Unkown 28275434 unclassifi Colidextribacter massiliensis F 0 ed Unkown 28275436 unclassifi Colisinistribacter massiliensis F 1 ed Unkown 27819657 Collinsella unclassifi bouchesdurhonensis F 1 ed Unkown 28275440 unclassifi Collinsella gabonensis F 1 ed Unkown 27819657 unclassifi Collinsella ihuae F 1 ed Unkown 28224039 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Collinsella phocaeensis F 1 ed Unkown 7.02.005 Unclassifi https://doi.org/10.1016/j.nmni.20 Collinsella provencensis F 1 ed Unkown 18.02.003 unclassifi http://dx.doi.org/10.1016/j.humic.20 Collinsella vaginalis F 1 ed Unkown 16.11.001 unclassifi Colonella massiliensis F 1 ed Unkown 27819657 unclassifi Congobacterium massiliense F 1 ed Unkown 28050249 Corynebacterium unclassifi http://dx.doi.org/10.1016/j.nmni.201 bouchesdurhonense F 0 ed Unkown 7.01.013 Unclassifi Corynebacterium fournierii A 0 ed Unkown 29383461 Corynebacterium unclassifi karolinskerse F 0 ed Unkown 27819657 unclassifi Corynebacterium lascolaense F 0 ed Unkown 27819657 unclassifi Corynebacterium pacaense F 0 ed Unkown 27819657 unclassifi Corynebacterium phoceense A 0 ed Unkown 27766158 Corynebacterium unclassifi provencense F 0 ed Unkown 27819657 Corynebacterium unclassifi urinapleomorphum A 0 ed Unkown 27872750 unclassifi Culturomica massiliensis F 1 ed Unkown 27819657 unclassifi Clinical 28556772 Dakarella massiliensis A 1 ed case unclassifi Dermabacter indicis A 0 ed Unkown 28859350 unclassifi Desnuesiella massiliensis F 1 ed Unkown 27819657 unclassifi Desulfomassilia massiliensis F 1 ed Unkown 27819657 Diaminobutyricimonas unclassifi massiliensis A 0 ed Yes 28859350 unclassifi Clinical Dietzia timorensis A 0 ed case 27130323 unclassifi Drancourtella massiliensis F 1 ed Unkown 27819657 unclassifi Drancourtella timonensis F 1 ed Unkown 27819657 unclassifi Duodenibacillus massiliensis F 1 ed Unkown 28275442 unclassifi Eggerthella timonensis F 1 ed Unkown 27819657 unclassifi Eisenbergiella massiliensis F 0 ed Unkown 27819657 unclassifi Emergencia timonensis F 0 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Enorma phocaeensis F 1 ed Unkown 7.02.005 unclassifi Enterobacter timonensis F 0 ed Unkown 27819657 unclassifi Enterococcus massiliensis F 0 ed Unkown 27819657 Unclassifi https://doi.org/10.1016/j.nmni.201 Enterococcus timonensis A 0 ed Unkown 7.12.004 unclassifi Eubacterium massiliense F 1 ed Unkown 27819657 unclassifi Ezakiella massiliensis A 1 ed Unkown 27843546 unclassifi 27619817 Faecalimonas umbilicata F 1 ed Unkown unclassifi Fenollaria timonensis F 1 ed Unkown 28224039 unclassifi Flavonifractor marseillense F 1 ed Unkown 27819657 unclassifi Fournierella massiliensis F 1 ed Unkown 27819657 unclassifi Fusobacterium massiliense F 1 ed Unkown 27819657 unclassifi Gabonia massiliensis F 1 ed Unkown 27819657 unclassifi Gabonibacter massiliensis F 1 ed Unkown 27628331 unclassifi Gabonibacter timonensis F 1 ed Unkown 28179984 Unclassifi https://doi.org/10.1016/j.nmni.201 Gemella massiliensis A 0 ed Unkown 7.12.009 unclassifi Gorbachella massiliensis F 1 ed Unkown 27819657 unclassifi Gordonibacter massiliensis F 1 ed Unkown 27819657 unclassifi Gorillibacterium timonense F 1 ed Unkown 27819657 unclassifi Gracilibacillus massiliensis F 0 ed Unkown 27819657 Unclassifi Gracilibacillus phocaeensis F 0 ed Unkown 29062488 unclassifi Gracilibacillus timonensis F 0 ed Unkown 27819657 unclassifi
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