General characteristics of the human bacterial isolated from 2015 to 17 April 2018 along with its classification based on oxygen tolerance (0 being able to tolerate oxygen and 1 strictly anaerobic), risk group, potential pathogenicity and the PMID of it article. A: New species isolated by culturomics approach, but not in the gut; B: Species isolated not by culturomics nor in the gut; C: New species isolated not by culturomics; D: Species isolated by routine culture in our lab; E: Species isolated in the human gut by culturomics; F: New species isolated in the human gut by culturomics; G: Species isolated in the human gut and not by culturomics.

Catego Oxygen Risk Pathogene Name rie tolerance Group city PMID unclassifi Acidaminococcus massiliensis F 1 ed Unkown 28018604 unclassifi Acidaminococcus timonensis F 1 ed Unkown 27819657 Actinomyces unclassifi bouchesdurhonensis F 0 ed Unkown 27819657 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces culturomici A 0 ed Unkown 7.12.008 unclassifi Actinomyces ihuae F 0 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.humic.20 Actinomyces mediterranea F 0 ed Unkown 17.01.001 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces minihominis F 0 ed Unkown 8.03.006 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces oralis A 0 ed Unkown 7.12.007 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces pacaensis A 0 ed Unkown 7.12.006 unclassifi Actinomyces phoceensis F 0 ed Unkown 27819657 unclassifi Actinomyces provencensis F 0 ed Unkown 27819657 unclassifi Clinical Actinomyces urinae A 0 ed case 27358739 unclassifi Actinotignum timonense A 1 ed Unkown 28203375 unclassifi Africanibacillus massiliensis F 1 ed Unkown 27408735 unclassifi Alistipes inops F 1 ed Unkown 26377180 unclassifi Alistipes massiliensis F 1 ed Unkown 27819657 unclassifi Alistipes phoceensis F 1 ed Unkown 27819657 unclassifi Alistipes provencensis F 1 ed Unkown 27819657 unclassifi Anaerococcus jeddahensis F 1 ed Unkown 27819657 Anaerococcus unclassifi http://dx.doi.org/10.1016/j.nmni.201 mediterraneensis A 1 ed Unkown 7.02.007 Anaerococcus unclassifi urinomassiliensis A 1 ed Unkown 27408746 unclassifi Anaerofustis massiliensis F 1 ed Unkown 27819657 Anaeromassilibacillus unclassifi senegalensis F 1 ed Unkown 27819657 unclassifi Anaerosalibacter timonensis F 1 ed Unkown 27819657 unclassifi Anaerotruncus massiliensis F 1 ed Unkown 27819657 Anaerotruncus rubinfantis F 1 unclassifi Unkown http://dx.doi.org/10.1016/j.nmni.201 ed 7.02.004 unclassifi Angelakisella massiliensis F 1 ed Unkown 28203377 unclassifi Arabia massiliensis F 0 ed Unkown 27819657 Arcanobacterium unclassifi urinimassiliense A 1 ed Unkown 28480045 Bacilliculturomica Unclassifi massiliensis F 1 ed Unkown 28794883 unclassifi caccae F 0 ed Unkown 28702201 unclassifi Bacillus dakarensis F 0 ed Unkown 28280541 Unclassifi Bacillus kwashiorkori F 0 ed Unkown 29076642 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Bacillus marasmi F 0 ed Unkown 7.02.004 unclassifi Bacillus massilinigeriensis F 0 ed Unkown 27819657 unclassifi Bacillus massiliogabonensis F 0 ed Unkown 27830079 unclassifi Bacillus mediterraneensis F 0 ed Unkown 27408743 unclassifi Bacillus phoceensis F 0 ed Unkown 27819657 unclassifi Bacillus sinesaloumensis F 0 ed Unkown 28280541 unclassifi Bacillus testis F 0 ed Unkown 27819657 Unclassifi Bacillus tuaregi F 0 ed Unkown 28706723 Bacteroides unclassifi http://dx.doi.org/10.1016/j.humic.20 bouchesdurhonensis F 1 ed Unkown 17.01.003 unclassifi http://dx.doi.org/10.1016/j.humic.20 Bacteroides congonensis F 1 ed Unkown 16.11.004 Unclassifi Bacteroides cutis A 1 ed Unkown 29556403 unclassifi Bacteroides ihuae A 1 ed Unkown 28289545 unclassifi Bacteroides massiliae A 1 ed Unkown 28859350 unclassifi Bacteroides mediterraneensis F 1 ed Unkown 27819657 unclassifi Bacteroides neonati F 1 ed Unkown 27819657 unclassifi Bacteroides phoceense F 1 ed Unkown 27819657 unclassifi Bariatricus massiliensis F 1 ed Unkown 27819657 unclassifi Beduinella massiliensis F 1 ed Unkown 27819657 unclassifi Beduinibacter massiliensis F 1 ed Unkown 27819657 unclassifi Bittarella massiliensis F 1 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Blautia marasmi F 1 ed Unkown 7.02.004 unclassifi Blautia massiliensis F 1 ed Unkown 27819657 unclassifi Blautia phoceensis F 1 ed Unkown 27819657 unclassifi Blautia provencensis F 1 ed Unkown 28702201 unclassifi Blautia timonensis F 1 ed Unkown 27819657 unclassifi Brachybacterium massiliense F 0 ed Unkown 27819657 unclassifi Bradyrhizobium massiliensis A 0 ed Yes 28859350 Unclassifi Brevibacterium ihuae F 0 ed Unkown 29204284 unclassifi Brevibacterium phoceense F 0 ed Unkown 27819657 unclassifi Butyricimonas phoceensis F 1 ed Unkown 27819657 unclassifi Butyricimonas timonensis F 1 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Caecibacter massiliensis F 1 ed Unkown 6.11.021 unclassifi Caecumella massiliensis F 1 ed Unkown 27819657 unclassifi Cellulomonas timonensis F 0 ed Unkown 27819657 unclassifi Christensenella massiliensis F 1 ed Unkown 27819657 unclassifi Christensenella timonensis F 1 ed Unkown 27819657 Chryseobacterium unclassifi timonianum A 0 ed Unkown 28509971 Unclassifi https://doi.org/10.1016/j.nmni.201 Citricoccus massiliensi A 0 ed Unkown 8.02.004 unclassifi Clostridium beduini F 1 ed Unkown 27819657 Clostridium unclassifi bouchesdurhonense F 1 ed Unkown 27819657 unclassifi Clostridium culturomicum F 1 ed Unkown 28702201 unclassifi Clostridium marseillense F 1 ed Unkown 27819657 Clostridium unclassifi massilidielmoense F 1 ed Unkown 27366325 Clostridium unclassifi massiliosenegalense F 1 ed Unkown 27595004 unclassifi Clostridium mediterraneense F 1 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Clostridium merdae F 1 ed Unkown 7.02.005 Unclassifi https://doi.org/10.1016/j.nmni.201 Clostridium minihomine F 1 ed Unkown 8.03.005 unclassifi Clostridium niameyense F 1 ed Unkown 27819657 unclassifi Clostridium nigeriense F 1 ed Unkown 27819657 unclassifi Clostridium phoceense F 1 ed Unkown 27819657 unclassifi Clostridium touaregense F 1 ed Unkown 27819657 unclassifi Colibacter massiliensis F 0 ed Unkown 28275434 unclassifi Colidextribacter massiliensis F 0 ed Unkown 28275436 unclassifi Colisinistribacter massiliensis F 1 ed Unkown 27819657 Collinsella unclassifi bouchesdurhonensis F 1 ed Unkown 28275440 unclassifi Collinsella gabonensis F 1 ed Unkown 27819657 unclassifi Collinsella ihuae F 1 ed Unkown 28224039 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Collinsella phocaeensis F 1 ed Unkown 7.02.005 Unclassifi https://doi.org/10.1016/j.nmni.20 Collinsella provencensis F 1 ed Unkown 18.02.003 unclassifi http://dx.doi.org/10.1016/j.humic.20 Collinsella vaginalis F 1 ed Unkown 16.11.001 unclassifi Colonella massiliensis F 1 ed Unkown 27819657 unclassifi Congobacterium massiliense F 1 ed Unkown 28050249 Corynebacterium unclassifi http://dx.doi.org/10.1016/j.nmni.201 bouchesdurhonense F 0 ed Unkown 7.01.013 Unclassifi Corynebacterium fournierii A 0 ed Unkown 29383461 Corynebacterium unclassifi karolinskerse F 0 ed Unkown 27819657 unclassifi Corynebacterium lascolaense F 0 ed Unkown 27819657 unclassifi Corynebacterium pacaense F 0 ed Unkown 27819657 unclassifi Corynebacterium phoceense A 0 ed Unkown 27766158 Corynebacterium unclassifi provencense F 0 ed Unkown 27819657 Corynebacterium unclassifi urinapleomorphum A 0 ed Unkown 27872750 unclassifi Culturomica massiliensis F 1 ed Unkown 27819657 unclassifi Clinical 28556772 Dakarella massiliensis A 1 ed case unclassifi Dermabacter indicis A 0 ed Unkown 28859350 unclassifi Desnuesiella massiliensis F 1 ed Unkown 27819657 unclassifi Desulfomassilia massiliensis F 1 ed Unkown 27819657 Diaminobutyricimonas unclassifi massiliensis A 0 ed Yes 28859350 unclassifi Clinical Dietzia timorensis A 0 ed case 27130323 unclassifi Drancourtella massiliensis F 1 ed Unkown 27819657 unclassifi Drancourtella timonensis F 1 ed Unkown 27819657 unclassifi Duodenibacillus massiliensis F 1 ed Unkown 28275442 unclassifi Eggerthella timonensis F 1 ed Unkown 27819657 unclassifi Eisenbergiella massiliensis F 0 ed Unkown 27819657 unclassifi Emergencia timonensis F 0 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Enorma phocaeensis F 1 ed Unkown 7.02.005 unclassifi Enterobacter timonensis F 0 ed Unkown 27819657 unclassifi Enterococcus massiliensis F 0 ed Unkown 27819657 Unclassifi https://doi.org/10.1016/j.nmni.201 Enterococcus timonensis A 0 ed Unkown 7.12.004 unclassifi Eubacterium massiliense F 1 ed Unkown 27819657 unclassifi Ezakiella massiliensis A 1 ed Unkown 27843546 unclassifi 27619817 Faecalimonas umbilicata F 1 ed Unkown unclassifi Fenollaria timonensis F 1 ed Unkown 28224039 unclassifi Flavonifractor marseillense F 1 ed Unkown 27819657 unclassifi Fournierella massiliensis F 1 ed Unkown 27819657 unclassifi Fusobacterium massiliense F 1 ed Unkown 27819657 unclassifi Gabonia massiliensis F 1 ed Unkown 27819657 unclassifi Gabonibacter massiliensis F 1 ed Unkown 27628331 unclassifi Gabonibacter timonensis F 1 ed Unkown 28179984 Unclassifi https://doi.org/10.1016/j.nmni.201 Gemella massiliensis A 0 ed Unkown 7.12.009 unclassifi Gorbachella massiliensis F 1 ed Unkown 27819657 unclassifi Gordonibacter massiliensis F 1 ed Unkown 27819657 unclassifi Gorillibacterium timonense F 1 ed Unkown 27819657 unclassifi Gracilibacillus massiliensis F 0 ed Unkown 27819657 Unclassifi Gracilibacillus phocaeensis F 0 ed Unkown 29062488 unclassifi Gracilibacillus timonensis F 0 ed Unkown 27819657 unclassifi Haemophilus massiliensis A 0 ed Unkown 27081435 unclassifi Halobacillus massiliensis F 0 ed Unkown 28280541 unclassifi Halomonas massiliensis F 0 ed Unkown 27819657 unclassifi Holdemania timonensis F 1 ed Unkown 27819657 unclassifi Hugonella massiliensis F 1 ed Unkown 27819657 unclassifi Ihubacter massiliensis F 1 ed Unkown 27819657 unclassifi Ihuella massiliensis F 1 ed Unkown 27819657 unclassifi Ihuprevotella massiliensis F 1 ed Unkown 27819657 unclassifi Ileibacterium massiliense F 0 ed Unkown 28275435 unclassifi Inediibacterium massiliense F 0 ed Unkown 28190153 unclassifi Intestinibacter massiliensis F 1 ed Unkown 27830078 unclassifi Intestinimonas gabonensis F 1 ed Unkown 27819657 unclassifi Intestinimonas massiliensis F 1 ed Unkown 27819657 unclassifi Intestinimonas phoceensis F 1 ed Unkown 27819657 unclassifi Intestinimonas timonensis F 1 ed Unkown 27819657 unclassifi Kallipyga gabonensis F 1 ed Unkown 27819657 unclassifi Khelaifiella massiliense F 0 ed Unkown 27819657 unclassifi Khoudiadiopia massiliensis A 1 ed Unkown 28702202 unclassifi Kingella negevensis A 1 ed Unkown 28699877 Unclassifi Kocuria massiliensis AD 0 ed Unkown 29063496 Lachnoclostridium unclassifi bouchesdurhonense F 1 ed Unkown 27493758 Unclassifi Lachnoclostridium edouardi F 1 ed Unkown 28831300 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Lachnoclostridium pacaense F 1 ed Unkown 7.02.004 Lachnoclostridium unclassifi phocaeense A 1 ed Unkown 28228968 unclassifi Lachnoclostridium timonense F 1 ed Unkown 27819657 unclassifi Lachnoclostridium tuaregi F 1 ed Unkown 27699049 Lachnoclostridium unclassifi urinomassiliense A 1 ed Unkown 28228968 Unclassifi Lactobacillus raoultii A 0 ed Unkown 29204281 Unclassifi Lactobacillus timonensis F 0 ed Unkown 28794887 Unclassifi Lactomassilus timonensis A 1 ed Unkown 29321940 unclassifi Lagierella massiliensis F 1 ed Unkown 27819657 unclassifi Lascolabacillus massiliensis F 0 ed Unkown 27819657 unclassifi Lentibacillus massiliensis F 1 ed Unkown 27819657 unclassifi Leptotrichia massiliensis F 0 ed Unkown 27819657 Unclassifi Leucobacter massiliensis A 0 ed Unkown 29204283 unclassifi Libanicoccus massiliensis F 1 ed Unkown 27942387 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Mailhella massiliensis F 1 ed Unkown 7.02.005 Mannheimia unclassifi massilioguelmaensis A 0 ed Unkown 26693284 unclassifi Marasmitruncus massiliensis F 1 ed Unkown 28702201 unclassifi Marseilla massiliensis F 1 ed Unkown 27819657 unclassifi Marseillibacter massiliensis F 1 ed Unkown 28127439 unclassifi Marseillicoccus timonensis F 1 ed Unkown 27819657 unclassifi Massilibacterium senegalense F 1 ed Unkown 26933503 Unclassifi Massilibacteroides vaginae A 0 ed Unkown 29071070 unclassifi Massiliclostridium coli F 1 ed Unkown 28224040 Massiliculturomica unclassifi massiliensis F 1 ed Unkown 27819657 unclassifi Massilimaliae massiliensis F 1 ed Unkown 27819657 unclassifi Massilimicrobiota timonensis F 1 ed Unkown 27358745 Massilioamazonia unclassifi massiliensis F 1 ed Unkown 27819657 unclassifi Massiliobacillus massiliensis F 1 ed Unkown 27819657 Massiliobacterium unclassifi senegalense F 1 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Massiliprevotella massiliensis F 1 ed Unkown 7.02.005 unclassifi Mediannikovella massiliensis F 1 ed Unkown 27819657 unclassifi Mediterranea massiliensis F 1 ed Unkown 27819657 unclassifi Merdibacter massiliensis F 1 ed Unkown 28050253 unclassifi Metaprevotella massiliensis F 1 ed Unkown 27819657 unclassifi Millionella massiliensis F 1 ed Unkown 28275429 Unclassifi https://doi.org/10.1016/j.nmni.201 Miniphocibacter massiliensis F 1 ed Unkown 8.03.003 unclassifi Mobilibacterium massiliense F 1 ed Unkown 28053704 unclassifi Mobilibacterium timonense F 1 ed Unkown 28053704 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Mordavella massiliensis F 1 ed Unkown 7.02.005 unclassifi Murdochiella massiliensis F 0 ed Unkown 27819657 unclassifi Murdochiella timonensis F 0 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.humic.20 Murdochiella vaginalis A 0 ed Unkown 16.11.002 Mycobacterium unclassifi tahitimassiliense A 0 ed Unkown 28859350 unclassifi Ndiopella massiliensis F 0 ed Unkown 27819657 unclassifi Ndongobacter massiliensis A 1 ed Unkown 28138391 unclassifi Necropsobacter massiliensis A 0 ed Unkown 26587237 unclassifi Negativibacillus massiliensis F 1 ed Unkown 28275439 unclassifi Negativicoccus massiliensis F 1 ed Unkown 27819657 unclassifi Neglecta timonensis F 1 ed Unkown 27819657 Unclassifi https://doi.org/10.1016/j.nmni.201 Neobitarella massiliensis F 1 ed Unkown 8.03.004 unclassifi Neofamilia massiliensis F 1 ed Unkown 27819657 unclassifi Niameyibacter massiliensis F 1 ed Unkown 27819657 unclassifi Nissabacter archeti A 1 ed Unkown 28392923 unclassifi Oceanobacillus senegalensis F 0 ed Unkown 28280541 unclassifi Oceanobacillus timonensis F 0 ed Unkown 28280541 unclassifi Olegusella massiliensis A 1 ed Unkown 27330814 Unclassifi Olsenella congonensis F 1 ed Unkown 28831301 unclassifi Olsenella massiliensis F 1 ed Unkown 27819657 Unclassifi https://doi.org/10.1016/j.humic.20 Olsenella mediterranea F 1 ed Unkown 17.05.003. unclassifi Olsenella phocaeensis F 1 ed Unkown 27819657 Olsenella provencensis F 1 unclassifi Unkown 27819657 ed unclassifi Olsenella timonensis F 1 ed Unkown 27819657 Unclassifi https://doi.org/10.1016/j.humic.20 Olsenella urininfantis A 1 ed Unkown 16.11.003. unclassifi Ornithinibacillus massiliensis F 0 ed Unkown 28702201 unclassifi Oscillibacter massiliensis F 1 ed Unkown 27819657 unclassifi Pacaella massiliensis F 1 ed Unkown 27819657 Paenibacillus unclassifi bouchesdurhonensis F 0 ed Unkown 27819657 unclassifi Paenibacillus dakarense A 0 ed Unkown 28859350 unclassifi Paenibacillus ihuae F 0 ed Unkown 27819657 unclassifi Paenibacillus marasmiensis F 0 ed Unkown 27819657 unclassifi Paenibacillus numidis F 0 ed Unkown 27819657 unclassifi Paenibacillus phoceensis F 0 ed Unkown 28116105 unclassifi Paenibacillus rubinfantis F 0 ed Unkown 27819657 Paenibacillus unclassifi senegalimassiliensis F 0 ed Unkown 27819657 unclassifi Paenibacillus tuaregi F 0 ed Unkown 27819657 unclassifi Paenibacillus xylanilyticus F 0 ed Unkown 27819657 Parabacteroides Unclassifi https://doi.org/10.1016/j.nmni.20 bouchesdurhonensis F 1 ed Unkown 18.02.004 unclassifi Parabacteroides massiliensis F 1 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.humic.20 Parabacteroides timonensis F 1 ed Unkown 16.10.002 unclassifi Pelobacter massiliensis F 0 ed Unkown 27257487 unclassifi http://dx.doi.org/10.1016/j.humic.20 Peptoniphilus duodeni F 1 ed Unkown 17.01.002 Unclassifi https://doi.org/10.1016/j.nmni.201 Peptoniphilus lacydonensis A 1 ed Unkown 8.02.007 unclassifi Peptoniphilus pacaensis A 1 ed Unkown 27408739 unclassifi Peptoniphilus phocaeensis F 1 ed Unkown 27222719 unclassifi Peptoniphilus raoultii A 1 ed Unkown 27408736 Peptoniphilus unclassifi urinimassiliensis A 1 ed Unkown 28203376 unclassifi Peptoniphilus vaginalis A 1 ed Unkown 27482387 unclassifi Phocibacillus massiliensis F 1 ed Unkown 27482388 unclassifi Planococcus massiliensis F 0 ed Unkown 27819657 unclassifi Prevotella caccae F 1 ed Unkown 27819657 unclassifi Prevotella ihumae F 1 ed Unkown 28480042 Unclassifi Prevotella lascolai A 1 ed Unkown 29447068 unclassifi Prevotella phocaeensis F 1 ed Unkown 28070336 unclassifi Prevotellamassilia timonensis F 1 ed Unkown 27819657 unclassifi Provencibacter massiliensis F 1 ed Unkown 27819657 Pseudoflavonifractor unclassifi phocaeensis F 1 ed Unkown 28275431 unclassifi Pygmaiobacter massiliensis F 0 ed Unkown 28179983 unclassifi Raoultibacter massiliensis F 0 ed Unkown 27819657 unclassifi Raoultibacter timonensis F 1 ed Unkown 27819657 unclassifi Rhodobacter massiliensis A 0 ed Yes 28859350 unclassifi Risungbinella massiliensis F 1 ed Unkown 27819657 unclassifi Romboutsia massiliensis F 1 ed Unkown 27819657 unclassifi Romboutsia timonensis F 1 ed Unkown 27819657 unclassifi Rubeoparvulum massiliense F 0 ed Unkown 27819657 unclassifi Ruminococcus phocaeensis F 1 ed Unkown 27752323 Unclassifi https://doi.org/10.1016/j.nmni.201

Sanguibacter massileinsis F 1 ed Unkown 8.03.002 Sanguibacteroides unclassifi massiliensis F 1 ed Unkown 27819657 Unclassifi Sediminibacillus massiliensis F 0 ed Unkown 29417358 unclassifi Senegalia massiliensis F 1 ed Unkown 27819657 Stenotrophomonas africana A 0 2 Unkown 28859350 unclassifi Streptococcus timonensis F 0 ed Unkown 27819657 unclassifi Sutterella massiliensis F 1 ed Unkown 27819657 Unclassifi https://doi.org/10.1016/j.nmni.20 Sutterella seckii F 1 ed Unkown 18.02.005 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Sutturella timonensis F 1 ed Unkown 7.02.005 unclassifi Tidjanibacter massiliensis F 1 ed Unkown 27819657 unclassifi Traorella massiliensis F 1 ed Unkown 28275430 unclassifi Urinacoccus massiliensis A 1 ed Unkown 27668082 unclassifi Urmitella massiliensis F 1 ed Unkown 27819657 unclassifi Urmitella timonensis F 1 ed Unkown 27819657 unclassifi Vaginella massiliensis A 1 ed Unkown 27872749 unclassifi Varibaculum massiliense A 1 ed Unkown 27504187 unclassifi Varibaculum timonense F 1 ed Unkown 28480042 Unclassifi https://doi.org/10.1016/j.humic.20 Veillonella massiliensis A 1 ed Unkown 17.05.002. unclassifi Virgibacillus dakarensis F 0 ed Unkown 28280541 unclassifi Virgibacillus marseillensis F 0 ed Unkown 28280541 Unclassifi Virgibacillus ndiopensis F 0 ed Unkown 29062488 unclassifi Vitreoscilla massiliensis F 1 ed Unkown 27819657 unclassifi Weeksella massiliensis A 1 ed Unkown 28859350 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Xanthomonas massiliensis F 1 ed Unkown 7.01.013 unclassifi Acetobacter pasteurianus E 0 ed Unkown 27819657 unclassifi Clinical Achromobacter dolens BC 0 ed case 25791931 unclassifi Clinical Achromobacter insuavis BC 0 ed case 25791931 Acidipropionibacterium unclassifi jensenii E 1 ed Unkown 27819657 unclassifi Clinical Acidomonas methanolica B 0 ed case 26886412 unclassifi Clinical Acidovorax oryzae B 0 ed case 25275006 Acinetobacter Unclassifi colistiniresistens C 0 ed Clinical 28671519 unclassifi Clinical Acinetobacter dijkshoorniae BC 0 ed case 27432448 unclassifi Clinical Acinetobacter seifertii BC 0 ed case 25563912 unclassifi Acinetobacter variabilis E 0 ed Unkown 27819657 unclassifi Acinetobacter venetianus B 0 ed Unkown 27139605 unclassifi 28647397 Actinomyces haliotis B 0 ed Unkown unclassifi Actinomyces johnsonii E 0 ed Unkown 27819657 unclassifi Clinical Actinotignum schaalii B 0 ed case 24518637 Unclassifi Aeromonas enterica G 0 ed Clinical 28050251 Unclassifi Aeromonas intestinalis G 0 ed Clinical 28050251 unclassifi Agrococcus casei E 0 ed Unkown 27819657 unclassifi Clinical Agromyces soli B 0 ed case 24403303 unclassifi Alkalibacillus halophilus E 0 ed Unkown 27819657 unclassifi Allisonella histaminiformans E 1 ed Unkown 27819657 unclassifi Clinical Anaerococcus degenerii BC 1 ed case 25680238 unclassifi Clinical Anaerococcus nagyae BC 1 ed case 26639871 unclassifi Aquamicrobium lusatiense E 0 ed Unkown 27819657 Clinical Arachnia propionica B 0 2 case 25129856 Unclassifi Arcobacter thereius B 0 ed clinical 28671965 unclassifi Arthrobacter agilis E 0 ed Unkown 27819657 unclassifi Arthrobacter koreensis E 0 ed Unkown 27819657 unclassifi Arthrobacter nicotianae D 0 ed Yes 28859350 unclassifi Arthrobacter pyridinolis E 0 ed Unkown 27819657 Atlantibacter hermannii B 0 unclassifi Unkown 27090787 ed unclassifi Clinical Atopobium deltae BC 0 ed case 24944340 unclassifi Bacillus altitudinis E 0 ed Unkown 27819657 unclassifi Bacillus andreesenii E 0 ed Unkown 27819657 unclassifi Bacillus baekryungensis E 0 ed Unkown 27819657 unclassifi Bacillus methylotrophicus E 0 ed Unkown 27819657 unclassifi Bacillus pakistanensis E 0 ed Unkown 27819657 unclassifi Bacillus pichinotyi E 0 ed Unkown 27819657 unclassifi Bacillus soli E 0 ed Unkown 27819657 unclassifi Bacillus subterraneus E 0 ed Unkown 27819657 unclassifi Bacteroides hypermegas E 1 ed Unkown 27819657 Unclassifi Bacteroides koreensis CG 1 ed Unkown 28945536 Unclassifi Bacteroides kribbi CG 1 ed Unkown 28945536 Unclassifi Bacteroides ochraceus C 1 ed Clinical 29181783 unclassifi Bacteroides xylanolyticus E 1 ed Unkown 27819657 unclassifi Clinical Bartonella ancashensis BC 0 ed case 26296673 unclassifi Clinical Bergeyella cardium BC 0 ed case 25544000 unclassifi Clinical Bibersteinia trehalosi BC 0 ed case 24510449 unclassifi Bifidobacterium coryneforme G 1 ed Unkown 27819657 unclassifi Bifidobacterium faecale E 1 ed Unkown 24944342 unclassifi Bifidobacterium ruminantium E 1 ed Unkown 26921694 unclassifi Bifidobacterium saeculare E 1 ed Unkown 27819657 Unclassifi Blautia hominis CG 1 ed Unkown 29458493 unclassifi Blautia stercoris G 1 ed Unkown 27819657 unclassifi Bordetella bronchialis BC 1 ed Unkown 26220296 unclassifi Bordetella flabilis BC 1 ed Unkown 26220297 unclassifi Bordetella sputigena BC 1 ed Unkown 26220298 unclassifi Clinical Borrelia bissettiae B 0 ed case 26846867 unclassifi Clinical Borrelia mayonii BC 0 ed case 27558626 unclassifi Clinical 27125686 Borreliella burgdorferi B 0 ed case Borreliella garinii B 0 2 Unkown 27161773 Unclassifi Bosea thiooxidans B 0 ed Clinical 28925927 unclassifi Brassicibacter mesophilus E 1 ed Unkown 27819657 unclassifi Brevibacillus choshinensis E 0 ed Unkown 27819657 Brucella neotomae B 0 3 Clinical 29254496 Unclassifi Brucella vertebral B 0 ed Clinical 29619327 unclassifi Clinical Burkholderia concitans B 0 ed case 27375597 unclassifi Clinical Burkholderia ginsengisoli B 0 ed case 26912763 Unclassifi Burkholderia singularis C 0 ed Clinical 28932212 unclassifi Burkholderia stagnalis BC 0 ed Unkown 25872960 unclassifi Clinical Burkholderia turbans BC 0 ed case 27375597 unclassifi Butyricicoccus faecihominis E 1 ed Unkown 27453394 unclassifi Carnobacterium mobile E 0 ed Unkown 27819657 unclassifi Cellulomonas flavigena E 0 ed Unkown 27819657 unclassifi Clinical Chromobacterium aquaticum B 1 ed case 27344541 Chryseobacterium unclassifi taklimakanense E 1 ed Unkown 27819657 unclassifi Citrobacter europaeus E 0 ed Unkown 27902229 unclassifi Citrobacter intermedius G 0 ed Unkown 27819657 unclassifi Clinical Cloacibacillus porcorum E 1 ed case 27819657 unclassifi Clinical Clostridium acetobutylinum G 1 ed case 27819657 unclassifi Clostridium amazonense E 1 ed Unkown 26123611 unclassifi Clostridium barkeri E 1 ed Unkown 27819657 unclassifi Clostridium carboxidivorans E 1 ed Unkown 27819657 unclassifi Clostridium cellobioparum G 1 ed Unkown 27819657 Clostridium unclassifi Clinical hydrogeniformans B 1 ed case 28232120 unclassifi Clostridium lactatifermentans E 1 ed Unkown 27819657 unclassifi Clostridium punense E 1 ed Unkown 26419229 unclassifi Clostridium sardiniense E 1 ed Unkown 27819657 Clinical Clostridium sordelli B 1 2 case 15127359 unclassifi Clostridium sporosphaeroides G 1 ed Unkown 27819657 unclassifi Clostridium tyrobutyricum G 1 ed Unkown 27819657 unclassifi Clostridium vulturis E 1 ed Unkown 26123611 unclassifi Coprobacter secundus E 1 ed Unkown 26377180 unclassifi Coprococcus eutactus G 1 ed Unkown 27819657 unclassifi Corynebacterium doosanense E 0 ed Unkown 27819657 unclassifi Clinical Corynebacterium flavescens E 0 ed case 27819657 Unclassifi Corynebacterium gottingense B 0 ed Clinical 2041036 unclassifi Clinical Corynebacterium lowii BC 0 ed case 27045762 unclassifi Corynebacterium magusii D 0 ed Unkown 28859350 unclassifi Clinical Corynebacterium oculi BC 0 ed case 27045762 unclassifi Clinical Cutibacterium acnes B 0 ed case 28218305 unclassifi Clinical Cutibacterium granulosum B 0 ed case 26665321 unclassifi Clinical Deferribacter desulfuricans B 1 ed case 24486169 unclassifi Dermabacter vaginalis BC 0 ed Unkown 26867728 unclassifi Clinical Dermacoccus barathri E 0 ed case 27819657 Desulfotomaculum unclassifi guttoideum D 1 ed Unkown 28859350 unclassifi Clinical Desulfovibrio legallii B 1 ed case 24850351 Unclassifi Elizabethkingia anophelis B 0 ed Clinical 27847376 Ellagibacter Unclassifi isourolithinifaciens CG 0 ed Unkown 29583112 Unclassifi Enterobacter bugandensis C 0 ed clinical 26637818 unclassifi Enterococcus diestrammenae E 0 ed Unkown 27819657 unclassifi Enterococcus eurekensis E 0 ed Unkown 27819657 Unclassifi Enteroscipio rubneri CG 1 ed Unkown 29537365 Unclassifi Epidermidibacterium keratini C 0 ed clinical 29458473 Erysipelatoclostridium unclassifi Clinical ramosum B 0 ed case 24283763 unclassifi Clinical Escherichia faecalis B 0 ed case 26073440 unclassifi Eubacterium budayi G 1 ed Unkown 27819657 unclassifi Eubacterium cellulosolvens G 1 ed Unkown 27819657 unclassifi Eubacterium fissicatena E 1 ed Unkown 27819657 unclassifi Eubacterium ruminantium G 1 ed Unkown 27819657 unclassifi Eubacterium ventriosum G 1 ed Unkown 27819657 unclassifi Clinical Exiguobacterium sibiricum B 0 ed case 25419837 unclassifi Ezakiella peruensis E 1 ed Unkown 25481562 unclassifi Faucicola mancuniensis BC 0 ed Unkown 25267870 unclassifi Clinical Flavobacterium ceti B 0 ed case 25932454 unclassifi Clinical Fusobacterium hwasookii BC 1 ed case 25257648 Glutamicibacter unclassifi Clinical creatinolyticus B 0 ed case 27357988 unclassifi Clinical Gordonia iterans BC 0 ed case 25052399 unclassifi Gordonibacter faecihominis E 1 ed Unkown 24948086 unclassifi Gracilibacillus thailandensis E 0 ed Unkown 27819657 unclassifi Clinical Haematomicrobium sanguinis B 0 ed case 26443074 unclassifi Clinical Haematospirillum jordaniae BC 0 ed case 26857139 unclassifi Halobacillus salinus E 0 ed Unkown 27819657 Unclassifi Helicobacter equorum B 0 ed Clinical 29326675 unclassifi Clinical Helicobacter trogontum B 0 ed case 26812283 unclassifi Clinical Herbaspirillum seropedicae B 0 ed case 25976156 unclassifi Clinical Hungatella hathewayi B 1 ed case 26187681 unclassifi Clinical Ignatzschineria indica B 0 ed case 25297331 unclassifi Clinical Ignatzschineria ureiclastica B 0 ed case 26402740 unclassifi Intestinibacter bartlettii E 1 ed Unkown 27819657 unclassifi Isoptericola variabilis E 0 ed Unkown 27819657 Unclassifi Janibacter brevis B 0 ed Clinical 29387173 unclassifi Janibacter limosus G 0 ed Unkown 27819657 unclassifi Clinical Janibacter terrae B 0 ed case 25135045 unclassifi Clinical Klebsiella alba BC 0 ed case 24958762 Unclassifi Klebsiella grimontii C 0 ed Clinical 29205126 unclassifi Clinical Klebsiella quasipneumoniae BC 0 ed case 24958762 Unclassifi Klebsiella quasivariicola C 0 ed Clinical 29051239 Unclassifi Kluyvera intestini CG 0 ed Clinical 29074664 unclassifi Kocuria koreensis E 0 ed Unkown 27819657 unclassifi Clinical Kocuria salsicia B 0 ed case 25497673 unclassifi Clinical Kosakonia radicincitans B 0 ed case 28174569 unclassifi Clinical Kroppenstedtia pulmonis BC 0 ed case 26910402 unclassifi Clinical Kroppenstedtia sanguinis BC 0 ed case 26910402 unclassifi Kushneria sinocarnis E 0 ed Unkown 27819657 unclassifi Lachnoanaerobaculum orale E 1 ed Unkown 27819657 unclassifi Lactobacillus acidipiscis E 0 ed Unkown 27819657 unclassifi Lactobacillus alimentarius G 0 ed Unkown 27819657 unclassifi Clinical Lactobacillus animalis G 0 ed case 27819657 unclassifi Lactobacillus dextrinicus E 0 ed Unkown 27819657 Lactobacillus diolivorans E 0 unclassifi Unkown 27819657 ed unclassifi Lactobacillus frumenti E 0 ed Unkown 27819657 unclassifi Lactobacillus ingluviei E 0 ed Unkown 27819657 unclassifi Lactobacillus leichmannii G 0 ed Unkown 27819657 unclassifi Lactobacillus mali E 0 ed Unkown 27819657 unclassifi Lactobacillus otakiensis E 0 ed Unkown 27819657 unclassifi Lactobacillus rogosae G 0 ed Unkown 27819657 unclassifi Lactobacillus satsumensis E 0 ed Unkown 27819657 unclassifi Lactobacillus sharpeae G 0 ed Unkown 27819657 unclassifi Lactobacillus vaccinostercus E 0 ed Unkown 27819657 unclassifi Lactococcus plantarum G 0 ed Unkown 27819657 unclassifi Clinical Lawsonella clevelandensis BC 1 ed case 27130323 unclassifi Clinical 28291631 Legionella clemsonensis BC 0 ed case unclassifi Clinical Legionella donaldsonii B 0 ed case 25926494 unclassifi Clinical Leptolyngbya ramosa B 0 ed case 25168130 unclassifi Clinical Leptospira mayottensis BC 0 ed case 25249563 Unclassifi Leptospira venezuelensis C 0 ed Clinical 29239713 Unclassifi Loktanella hongkongensis B 0 ed Clinical 29272955 unclassifi Lysinibacillus macroides E 0 ed Unkown 27819657 unclassifi Lysinibacillus varians E 0 ed Unkown 27819657 unclassifi Macrococcus brunensis BC 0 ed Unkown 28086066 unclassifi Mageeibacillus indolicus BC 1 ed Unkown 25482717 Clinical Mannheimia glucosida B 0 2 case 26202121 Unclassifi Merdimonas faecis CG 1 ed Unkown 28741995 unclassifi Mesorhizobium amorphae D 0 ed Unkown 28859350 Methanobacterium unclassifi ruminantium E 1 ed Unkown 27819657 unclassifi Microbacterium maritypicum E 0 ed Unkown 27819657 Microbacterium unclassifi saccharophilum E 0 ed Unkown 27819657 unclassifi Micromonospora floridensis D 0 ed Unkown 28859350 unclassifi Mitsuokella jalaludinii E 1 ed Unkown 27819657 Unclassifi Monoglobus pectinilyticus CG 1 ed Unkown 29039307 unclassifi Mycobacterium ahvazicum D 0 ed Unkown 28859350 unclassifi Mycobacterium brasiliensis B 0 ed Unkown 27335623 unclassifi Clinical Mycobacterium celeriflavum BC 0 ed case 25389151 unclassifi Clinical Mycobacterium chubuense B 0 ed case 25463697 Unclassifi Mycobacterium eburneum C 0 ed Clinical 28869002 Clinical Mycobacterium farcinogenes B 0 2 case 25264489 Unclassifi Mycobacterium grossiae C 0 ed Clinical 28984546 unclassifi Mycobacterium manitobense B 0 ed Unkown 27335623 unclassifi Mycobacterium paraense BC 0 ed Unkown 25487637 Mycobacterium unclassifi Clinical paragordonae BC 0 ed case 24006480 Mycobacterium unclassifi Clinical 27169721 paraintracellulare BC 0 ed case Unclassifi Mycobacterium persicum C 0 ed clinical 28629501 unclassifi Mycobacterium rattisbonense D 0 ed Unkown 28859350 unclassifi Clinical Mycobacterium saopaulense BC 0 ed case 26358475 Unclassifi Mycobacterium talmoniae C 0 ed Clinical 28809146 Clinical Mycoplasma edwardii B 0 2 case 24040782 unclassifi Clinical Mycoplasma elephantis B 0 ed case 25592857 Unclassifi Neisseria dumasiana C 0 ed Clinical 28933320 unclassifi Clinical Nesterenkonia jeotgali B 0 ed case 28210247 unclassifi Nocardia arizonensis BC 0 ed Unkown 26427857 unclassifi Clinical Nocardia cerradoensis B 0 ed case 25568436 unclassifi Nocardia corynebacteroides D 0 ed Unkown 28859350 unclassifi Clinical Nocardia crassostreae B 0 ed case 26712447 unclassifi Nocardia donostiensis BC 0 ed Unkown 26914251 unclassifi Clinical Nocardia fusca B 0 ed case 26038381 unclassifi Clinical Nocardia vulneris BC 0 ed case 25015412 unclassifi Clinical 28487855 Oblitimonas alkaliphila BC 0 ed case unclassifi Ochrobactrum oryzae E 0 ed Unkown 27287730 unclassifi Ornithinibacillus contaminans E 0 ed Unkown 27819657 unclassifi Paenibacillus abekawaensis E 0 ed Unkown 27819657 unclassifi Paenibacillus anaericanus E 0 ed Unkown 27819657 unclassifi Paenibacillus azoreducens E 0 ed Unkown 27819657 unclassifi Paenibacillus faecis E 0 ed Unkown 26394885 unclassifi Paenibacillus odorifer E 0 ed Unkown 27819657 Paenibacillus residui B 0 unclassifi Clinical 27237546 ed case unclassifi Paenibacillus stellifer E 0 ed Yes 27819657 unclassifi Paenibacillus typhae E 0 ed Unkown 27819657 unclassifi Clinical 28238846 Pannonibacter phragmitetus B 0 ed case Unclassifi Pantoea gaviniae B 0 ed Clinical 28161294 unclassifi Pantoea intestinalis E 0 ed Unkown 26297006 unclassifi Parabacteroides faecis E 1 ed Unkown 27819657 unclassifi Clinical Paraclostridium bifermentans B 0 ed case 26015796 unclassifi Clinical Paracoccus sanguinis BC 0 ed case 25792366 unclassifi Paraliobacillus quinghaiensis E 1 ed Unkown 27819657 Unclassifi Parolsenella catena CG 1 ed Unkown 29458507 unclassifi Clinical Peptoanaerobacter stomatis BC 1 ed case 26221418 unclassifi Peptoniphilus catoniae E 1 ed Unkown 26907921 unclassifi Peptostreptococcus russellii E 1 ed Unkown 27819657 unclassifi Petrimonas sulfuriphila E 1 ed Unkown 27819657 Phascalarctobacterium unclassifi succinatutens E 1 ed Unkown 27819657 Phascolarctobacterium unclassifi faecium E 1 ed Unkown 27819657 Unclassifi Phytobacter diazotrophicus B 0 ed Clinical 29125457 Unclassifi Phytobacter ursingii C 0 ed Clinical 29125457 Unclassifi Ponibacter altruii C 0 ed Clinical 28725439 unclassifi Porphyromonas pasteri BC 1 ed Unkown 25933621 unclassifi Clinical 28353460 Porphyromonas pogonae B 1 ed case Prevotella albensis G 1 2 Unkown 27819657 Prevotella brevis G 1 2 Unkown 27819657 unclassifi Clinical Prevotella colorans BC 1 ed case 27150727 Propionibacterium unclassifi Clinical namnetense BC 0 ed case 27259292 unclassifi Pseudomonas boreopolis E 0 ed Unkown 27819657 unclassifi Pseudomonas caricapapayae E 0 ed Unkown 27819657 unclassifi Pseudomonas gessardii E 0 ed Unkown 27819657 unclassifi Clinical Pseudomonas huttiensis B 0 ed case 26179298 unclassifi Pseudomonas tolaasii E 0 ed Unkown 27819657 Pseudonocardia Unclassifi carboxydivorans B 0 ed Clinical 28683769 unclassifi Raoultella terrigena G 0 ed Unkown 27819657 unclassifi Clinical Rarimicrobium hominis BC 1 ed case 26320053 unclassifi Rhizobacterium radiobacter E 0 ed Unkown 27819657 unclassifi Clinical Rhizobium pusense B 0 ed case 25669878 Unclassifi Rubneribacter badeniensis CG 1 ed Unkown 29537365 unclassifi Ruminococcus albus G 1 ed Unkown 27819657 unclassifi Ruminococcus lactaris G 1 ed Unkown 27819657 unclassifi Rummeliibacillus suwonensis E 0 ed Unkown 27819657 unclassifi Rummeliibacilus stabekisii E 0 ed Unkown 27819657 Ruthenibacterium unclassifi lactatiformans E 1 ed Unkown 27154556 unclassifi Salimicrobium jeotgali E 0 ed Unkown 27819657 unclassifi Salinivibrio costicola E 0 ed Unkown 27819657 unclassifi Selenomonas ruminantium G 1 ed Unkown 27819657 unclassifi Sellimonas intestinalis E 1 ed Unkown 26637816 Unclassifi Shewanella carassii CG 0 ed Unkown 29205124 unclassifi Solibacillus silvestris E 0 ed Unkown 27819657 unclassifi Clinical Sphingobacterium hotanense B 0 ed case 28603641 Unclassifi Sphingobacterium lactis C 0 ed Clinical 28141505 unclassifi Clinical Sphingomonas anadarae B 0 ed case 25851908 unclassifi Clinical Sphingomonas koreensis B 0 ed case 25540396 unclassifi Clinical Spiroplasma turonicum B 1 ed case 25428150 Sporolactobacillus unclassifi laevolacticus E 0 ed Unkown 27819657 unclassifi aquimarina E 0 ed Unkown 27819657 unclassifi Staphylococcus argenteus B 0 ed Unkown 25269845 Unclassifi Staphylococcus chromogenes B 0 ed Clinical 28706393 unclassifi Staphylococcus fleurettii B 0 ed Unkown 27188770 Staphylococcus unclassifi Clinical piscifermentans B 0 ed case 25878345 Stenotrophomonas unclassifi acidaminiphila E 0 ed Unkown 27819657 Unclassifi Streptobacillus notomytis B 0 ed Clniical 29191371 Unclassifi Streptococcus caprae B 0 ed Clinical 28954470 Unclassifi Streptococcus dentapri B 0 ed Clniical 28892899 unclassifi Clinical Streptococcus devriesei B 0 ed case 28053705 unclassifi Streptococcus hyointestinalis B 0 ed Unkown 26960634 unclassifi Clinical Streptococcus minor B 0 ed case 27688883 unclassifi Clinical Streptococcus parauberis B 0 ed case 27514967 unclassifi Clinical Streptococcus pluranimalium B 0 ed case 25437686 unclassifi Clinical Streptomyces atratus B 0 ed case 26585366 unclassifi Streptomyces koyangensis E 0 ed Unkown 27819657 unclassifi Streptomyces lydicus D 0 ed Unkown 28859350 unclassifi Streptomyces sampsonii D 0 ed Unkown 28859350 Streptomyces unclassifi Clinical thermocarboxydus B 0 ed case 24462427 unclassifi Clinical Tatumella saanichensis BC 0 ed case 25807976 unclassifi Terribacillus aidingensis E 0 ed Unkown 27819657 unclassifi Terrisporobacter mayombei E 1 ed Unkown 27819657 unclassifi Clinical Terrisporobacter othiniensis B 1 ed case 25744994 unclassifi Tetragenococcus koreensis E 0 ed Unkown 27819657 Thermoactinomyces unclassifi sanguinis E 0 ed Unkown 27819657 Unclassifi Tsukamurella hominis C 0 ed Clniical 29458478 unclassifi Clinical Tsukamurella hongkongensis BC 0 ed case 26530900 Unclassifi Tsukamurella ocularis C 0 ed Clniical 29458478 unclassifi Clinical Tsukamurella sinensis BC 0 ed case 26530900 unclassifi Vagococcus carniphilus E 0 ed Unkown 27819657 unclassifi Vagococcus lutrae E 0 ed Yes 27819657 unclassifi Vagococcus penaei G 0 ed Unkown 27819657 unclassifi Vagococcus teuberi E 0 ed Unkown 27819657 unclassifi Clinical Veillonella seminalis BC 1 ed case 25052396 unclassifi Clinical

Vibrio cidicii B 0 ed case 27468862 unclassifi Clinical

Vibrio navarrensis E 0 ed case 25187632 unclassifi

Virgibacillus siamensis E 0 ed Unkown 27819657 Unclassifi

Waddlia chondrophila B 1 ed Unkown 29145645