General characteristics of the human bacterial species isolated from 2015 to 17 April 2018 along with its classification based on oxygen tolerance (0 being able to tolerate oxygen and 1 strictly anaerobic), risk group, potential pathogenicity and the PMID of it article. A: New species isolated by culturomics approach, but not in the gut; B: Species isolated not by culturomics nor in the gut; C: New species isolated not by culturomics; D: Species isolated by routine culture in our lab; E: Species isolated in the human gut by culturomics; F: New species isolated in the human gut by culturomics; G: Species isolated in the human gut and not by culturomics. Catego Oxygen Risk Pathogene Name rie tolerance Group city PMID unclassifi Acidaminococcus massiliensis F 1 ed Unkown 28018604 unclassifi Acidaminococcus timonensis F 1 ed Unkown 27819657 Actinomyces unclassifi bouchesdurhonensis F 0 ed Unkown 27819657 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces culturomici A 0 ed Unkown 7.12.008 unclassifi Actinomyces ihuae F 0 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.humic.20 Actinomyces mediterranea F 0 ed Unkown 17.01.001 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces minihominis F 0 ed Unkown 8.03.006 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces oralis A 0 ed Unkown 7.12.007 Unclassifi https://doi.org/10.1016/j.nmni.201 Actinomyces pacaensis A 0 ed Unkown 7.12.006 unclassifi Actinomyces phoceensis F 0 ed Unkown 27819657 unclassifi Actinomyces provencensis F 0 ed Unkown 27819657 unclassifi Clinical Actinomyces urinae A 0 ed case 27358739 unclassifi Actinotignum timonense A 1 ed Unkown 28203375 unclassifi Africanibacillus massiliensis F 1 ed Unkown 27408735 unclassifi Alistipes inops F 1 ed Unkown 26377180 unclassifi Alistipes massiliensis F 1 ed Unkown 27819657 unclassifi Alistipes phoceensis F 1 ed Unkown 27819657 unclassifi Alistipes provencensis F 1 ed Unkown 27819657 unclassifi Anaerococcus jeddahensis F 1 ed Unkown 27819657 Anaerococcus unclassifi http://dx.doi.org/10.1016/j.nmni.201 mediterraneensis A 1 ed Unkown 7.02.007 Anaerococcus unclassifi urinomassiliensis A 1 ed Unkown 27408746 unclassifi Anaerofustis massiliensis F 1 ed Unkown 27819657 Anaeromassilibacillus unclassifi senegalensis F 1 ed Unkown 27819657 unclassifi Anaerosalibacter timonensis F 1 ed Unkown 27819657 unclassifi Anaerotruncus massiliensis F 1 ed Unkown 27819657 Anaerotruncus rubinfantis F 1 unclassifi Unkown http://dx.doi.org/10.1016/j.nmni.201 ed 7.02.004 unclassifi Angelakisella massiliensis F 1 ed Unkown 28203377 unclassifi Arabia massiliensis F 0 ed Unkown 27819657 Arcanobacterium unclassifi urinimassiliense A 1 ed Unkown 28480045 Bacilliculturomica Unclassifi massiliensis F 1 ed Unkown 28794883 unclassifi Bacillus caccae F 0 ed Unkown 28702201 unclassifi Bacillus dakarensis F 0 ed Unkown 28280541 Unclassifi Bacillus kwashiorkori F 0 ed Unkown 29076642 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Bacillus marasmi F 0 ed Unkown 7.02.004 unclassifi Bacillus massilinigeriensis F 0 ed Unkown 27819657 unclassifi Bacillus massiliogabonensis F 0 ed Unkown 27830079 unclassifi Bacillus mediterraneensis F 0 ed Unkown 27408743 unclassifi Bacillus phoceensis F 0 ed Unkown 27819657 unclassifi Bacillus sinesaloumensis F 0 ed Unkown 28280541 unclassifi Bacillus testis F 0 ed Unkown 27819657 Unclassifi Bacillus tuaregi F 0 ed Unkown 28706723 Bacteroides unclassifi http://dx.doi.org/10.1016/j.humic.20 bouchesdurhonensis F 1 ed Unkown 17.01.003 unclassifi http://dx.doi.org/10.1016/j.humic.20 Bacteroides congonensis F 1 ed Unkown 16.11.004 Unclassifi Bacteroides cutis A 1 ed Unkown 29556403 unclassifi Bacteroides ihuae A 1 ed Unkown 28289545 unclassifi Bacteroides massiliae A 1 ed Unkown 28859350 unclassifi Bacteroides mediterraneensis F 1 ed Unkown 27819657 unclassifi Bacteroides neonati F 1 ed Unkown 27819657 unclassifi Bacteroides phoceense F 1 ed Unkown 27819657 unclassifi Bariatricus massiliensis F 1 ed Unkown 27819657 unclassifi Beduinella massiliensis F 1 ed Unkown 27819657 unclassifi Beduinibacter massiliensis F 1 ed Unkown 27819657 unclassifi Bittarella massiliensis F 1 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Blautia marasmi F 1 ed Unkown 7.02.004 unclassifi Blautia massiliensis F 1 ed Unkown 27819657 unclassifi Blautia phoceensis F 1 ed Unkown 27819657 unclassifi Blautia provencensis F 1 ed Unkown 28702201 unclassifi Blautia timonensis F 1 ed Unkown 27819657 unclassifi Brachybacterium massiliense F 0 ed Unkown 27819657 unclassifi Bradyrhizobium massiliensis A 0 ed Yes 28859350 Unclassifi Brevibacterium ihuae F 0 ed Unkown 29204284 unclassifi Brevibacterium phoceense F 0 ed Unkown 27819657 unclassifi Butyricimonas phoceensis F 1 ed Unkown 27819657 unclassifi Butyricimonas timonensis F 1 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Caecibacter massiliensis F 1 ed Unkown 6.11.021 unclassifi Caecumella massiliensis F 1 ed Unkown 27819657 unclassifi Cellulomonas timonensis F 0 ed Unkown 27819657 unclassifi Christensenella massiliensis F 1 ed Unkown 27819657 unclassifi Christensenella timonensis F 1 ed Unkown 27819657 Chryseobacterium unclassifi timonianum A 0 ed Unkown 28509971 Unclassifi https://doi.org/10.1016/j.nmni.201 Citricoccus massiliensi A 0 ed Unkown 8.02.004 unclassifi Clostridium beduini F 1 ed Unkown 27819657 Clostridium unclassifi bouchesdurhonense F 1 ed Unkown 27819657 unclassifi Clostridium culturomicum F 1 ed Unkown 28702201 unclassifi Clostridium marseillense F 1 ed Unkown 27819657 Clostridium unclassifi massilidielmoense F 1 ed Unkown 27366325 Clostridium unclassifi massiliosenegalense F 1 ed Unkown 27595004 unclassifi Clostridium mediterraneense F 1 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Clostridium merdae F 1 ed Unkown 7.02.005 Unclassifi https://doi.org/10.1016/j.nmni.201 Clostridium minihomine F 1 ed Unkown 8.03.005 unclassifi Clostridium niameyense F 1 ed Unkown 27819657 unclassifi Clostridium nigeriense F 1 ed Unkown 27819657 unclassifi Clostridium phoceense F 1 ed Unkown 27819657 unclassifi Clostridium touaregense F 1 ed Unkown 27819657 unclassifi Colibacter massiliensis F 0 ed Unkown 28275434 unclassifi Colidextribacter massiliensis F 0 ed Unkown 28275436 unclassifi Colisinistribacter massiliensis F 1 ed Unkown 27819657 Collinsella unclassifi bouchesdurhonensis F 1 ed Unkown 28275440 unclassifi Collinsella gabonensis F 1 ed Unkown 27819657 unclassifi Collinsella ihuae F 1 ed Unkown 28224039 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Collinsella phocaeensis F 1 ed Unkown 7.02.005 Unclassifi https://doi.org/10.1016/j.nmni.20 Collinsella provencensis F 1 ed Unkown 18.02.003 unclassifi http://dx.doi.org/10.1016/j.humic.20 Collinsella vaginalis F 1 ed Unkown 16.11.001 unclassifi Colonella massiliensis F 1 ed Unkown 27819657 unclassifi Congobacterium massiliense F 1 ed Unkown 28050249 Corynebacterium unclassifi http://dx.doi.org/10.1016/j.nmni.201 bouchesdurhonense F 0 ed Unkown 7.01.013 Unclassifi Corynebacterium fournierii A 0 ed Unkown 29383461 Corynebacterium unclassifi karolinskerse F 0 ed Unkown 27819657 unclassifi Corynebacterium lascolaense F 0 ed Unkown 27819657 unclassifi Corynebacterium pacaense F 0 ed Unkown 27819657 unclassifi Corynebacterium phoceense A 0 ed Unkown 27766158 Corynebacterium unclassifi provencense F 0 ed Unkown 27819657 Corynebacterium unclassifi urinapleomorphum A 0 ed Unkown 27872750 unclassifi Culturomica massiliensis F 1 ed Unkown 27819657 unclassifi Clinical 28556772 Dakarella massiliensis A 1 ed case unclassifi Dermabacter indicis A 0 ed Unkown 28859350 unclassifi Desnuesiella massiliensis F 1 ed Unkown 27819657 unclassifi Desulfomassilia massiliensis F 1 ed Unkown 27819657 Diaminobutyricimonas unclassifi massiliensis A 0 ed Yes 28859350 unclassifi Clinical Dietzia timorensis A 0 ed case 27130323 unclassifi Drancourtella massiliensis F 1 ed Unkown 27819657 unclassifi Drancourtella timonensis F 1 ed Unkown 27819657 unclassifi Duodenibacillus massiliensis F 1 ed Unkown 28275442 unclassifi Eggerthella timonensis F 1 ed Unkown 27819657 unclassifi Eisenbergiella massiliensis F 0 ed Unkown 27819657 unclassifi Emergencia timonensis F 0 ed Unkown 27819657 unclassifi http://dx.doi.org/10.1016/j.nmni.201 Enorma phocaeensis F 1 ed Unkown 7.02.005 unclassifi Enterobacter timonensis F 0 ed Unkown 27819657 unclassifi Enterococcus massiliensis F 0 ed Unkown 27819657 Unclassifi https://doi.org/10.1016/j.nmni.201 Enterococcus timonensis A 0 ed Unkown 7.12.004 unclassifi Eubacterium massiliense F 1 ed Unkown 27819657 unclassifi Ezakiella massiliensis A 1 ed Unkown 27843546 unclassifi 27619817 Faecalimonas umbilicata F 1 ed Unkown unclassifi Fenollaria timonensis F 1 ed Unkown 28224039 unclassifi Flavonifractor marseillense F 1 ed Unkown 27819657 unclassifi Fournierella massiliensis F 1 ed Unkown 27819657 unclassifi Fusobacterium massiliense F 1 ed Unkown 27819657 unclassifi Gabonia massiliensis F 1 ed Unkown 27819657 unclassifi Gabonibacter massiliensis F 1 ed Unkown 27628331 unclassifi Gabonibacter timonensis F 1 ed Unkown 28179984 Unclassifi https://doi.org/10.1016/j.nmni.201 Gemella massiliensis A 0 ed Unkown 7.12.009 unclassifi Gorbachella massiliensis F 1 ed Unkown 27819657 unclassifi Gordonibacter massiliensis F 1 ed Unkown 27819657 unclassifi Gorillibacterium timonense F 1 ed Unkown 27819657 unclassifi Gracilibacillus massiliensis F 0 ed Unkown 27819657 Unclassifi Gracilibacillus phocaeensis F 0 ed Unkown 29062488 unclassifi Gracilibacillus timonensis F 0 ed Unkown 27819657 unclassifi