Vegetation and Ecological Characterisitics of Mixed-Conifer
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Urticalean Rosids: Circumscription, Rosid Ancestry, and Phylogenetics Based on Rbcl, Trnl-F, and Ndhf Sequences1
American Journal of Botany 89(9): 1531±1546. 2002. URTICALEAN ROSIDS: CIRCUMSCRIPTION, ROSID ANCESTRY, AND PHYLOGENETICS BASED ON RBCL, TRNL-F, AND NDHF SEQUENCES1 KENNETH J. SYTSMA,2,9 JEFFERY MORAWETZ,2,4 J. CHRIS PIRES,2,5 MOLLY NEPOKROEFF,2,6 ELENA CONTI,2,7 MICHELLE ZJHRA,2,8 JOCELYN C. HALL,2 AND MARK W. C HASE3 2Department of Botany, University of Wisconsin, Madison, Wisconsin 53706 USA, and 3Molecular Systematics Section, Royal Botanic Gardens, Kew, UK To address the composition of the urticalean rosids, the relationships of the component families (maximally Cannabaceae, Cecro- piaceae, Celtidaceae, Moraceae, Ulmaceae, and Urticaceae) and analyze evolution of morphological characters, we analyzed sequence variation for a large sampling of these families and various rosid outgroups using rbcL, trnL-F, and ndhF plastid regions. Urticalean rosids are derived out of a lineage including Barbeyaceae, Dirachmaceae, Elaeagnaceae, and Rhamnaceae, with Rosaceae less closely related; thus, they are imbedded within Rosales. Ulmaceae are the sister to all remaining families. Cannabaceae are derived out of a subclade of Celtidaceae; this expanded family should be called Cannabaceae. Cecropiaceae are derived within Urticaceae and are polyphyletic with Poikilospermum derived elsewhere within Urticaceae; this expanded family should be called Urticaceae. Monophy- letic Moraceae are sister to this expanded Urticaceae. Support for these relationships comes from a number of morphological characters (¯oral sexuality, presence or absence of hypanthium, stamen type and dehiscence, pollen pore number, ovule position, and embryo alignment) and chromosome numbers. Most fruit types, in terms of ecological dispersal, are derived independently multiple times and are strongly correlated with habitat. -
Region 4 Threatened, Endangered and Sensitive Species List
INTERMOUNTAIN REGION (R4) THREATENED, ENDANGERED, PROPOSED, AND, SENSITIVE SPECIES June 2016 KNOWN / SUSPECTED DISTRIBUTION BY FOREST STATUS FOREST ENDANGERED ASH BOI B-T CAR CHA DIX FIS HUM M-L PAY SAL SAW TAR TOI UIN W-C MAMMALS Black-footed ferret 3/11/67 o o Mustela nigripes Sierra Nevada bighorn sheep Ovis canadensis X sierra January 3, 2000 BIRDS Southwestern willow flycatcher 2/27/95 X ? Empidonax traillii extimus ED 3/29/95 Whooping crane 3/11/67 X ? Grus americana REPTILES AND AMPHIBIANS Sierra Nevada Yellow-legged Frog 06/30/2014 X Rana sierrae INSECTS Mt. Charleston Blue Butterfly 10/21/2013 X Icaricia shasta charlestonensis FISH June sucker 3/31/86 o o Chasmistes liorus Bonytail chub 4/23/80 o o o o o o o Gila elegans Humpback chub 3/11/67 o o o o o o o Gila cypha Colorado pike minnow 3/11/67 o o o o o o o Ptychocheilus lucius Kendall Warm Springs dace 10/13/70 X Rhinichthys osculus Proposed, Endangered, Threatened, and Sensitive Species List, R4 Page 2 of 19 ENDANGERED ASH BOI B-T CAR CHA DIX FIS HUM M-L PAY SAL SAW TAR TOI UIN W-C Sockeye salmon, (Snake River0 11/20/91 + + + X Oncorhynchus nerka (CH 12/28/98) Razorback sucker 10/23/91 o o o o o o o Xyrauchen texanus (ED 11/22/91) Sturgeon, pallid o Scaphirhynchus albus PLANTS San Rafael cactus X Pediocactus despainii Clay phacelia 09/28/78 ? X Phacelia argillacea THREATENED ASH BOI B-T CAR CHA DIX FIS HUM M-L PAY SAL SAW TAR TOI UIN W-C MAMMALS Canada lynx 4/15/00 X X X X X X ? ? Lynx canadensis Grizzly bear 9/21/2009 X X Ursus arctos horribilis Gray wolf (Wyoming Rocky -
Stace Edition 4: Changes
STACE EDITION 4: CHANGES NOTES Changes to the textual content of keys and species accounts are not covered. "Mention" implies that the taxon is or was given summary treatment at the head of a family, family division or genus (just after the key if there is one). "Reference" implies that the taxon is or was given summary treatment inline in the accounts for a genus. "Account" implies that the taxon is or was given a numbered account inline in the numbered treatments within a genus. "Key" means key at species / infraspecific level unless otherwise qualified. "Added" against an account, mention or reference implies that no treatment was given in Edition 3. "Given" against an account, mention or reference implies that this replaces a less full or prominent treatment in Stace 3. “Reduced to” against an account or reference implies that this replaces a fuller or more prominent treatment in Stace 3. GENERAL Family order changed in the Malpighiales Family order changed in the Cornales Order Boraginales introduced, with families Hydrophyllaceae and Boraginaceae Family order changed in the Lamiales BY FAMILY 1 LYCOPODIACEAE 4 DIPHASIASTRUM Key added. D. complanatum => D. x issleri D. tristachyum keyed and account added. 5 EQUISETACEAE 1 EQUISETUM Key expanded. E. x meridionale added to key and given account. 7 HYMENOPHYLLACEAE 1 HYMENOPHYLLUM H. x scopulorum given reference. 11 DENNSTAEDTIACEAE 2 HYPOLEPIS added. Genus account added. Issue 7: 26 December 2019 Page 1 of 35 Stace edition 4 changes H. ambigua: account added. 13 CYSTOPTERIDACEAE Takes on Gymnocarpium, Cystopteris from Woodsiaceae. 2 CYSTOPTERIS C. fragilis ssp. fragilis: account added. -
Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
Rhamnaceae) Jürgen Kellermanna,B
Swainsona 33: 43–50 (2020) © 2020 Board of the Botanic Gardens & State Herbarium (Adelaide, South Australia) Nomenclatural notes and typifications in Australian species of Paliureae (Rhamnaceae) Jürgen Kellermanna,b a State Herbarium of South Australia, GPO Box 1047, Adelaide, South Australia 5001 Email: [email protected] b The University of Adelaide, School of Biological Sciences, Adelaide, South Australia 5005 Abstract: The nomenclature of the four species of Ziziphus Mill. and the one species of Hovenia Thunb. occurring in Australia is reviewed, including the role of the Hermann Herbarium for the typification of Z. oenopolia (L.) Mill. and Z. mauritiana Lam. Lectotypes are chosen for Z. quadrilocularis F.Muell. and Z. timoriensis DC. A key to species is provided, as well as illustrations for Z. oenopolia, Z. quadrilocularis and H. dulcis Thunb. Keywords: Nomenclature, typification, Hovenia, Ziziphus, Rhamnaceae, Paliureae, Paul Hermann, Carolus Linnaeus, Henry Trimen, Australia Introduction last worldwide overview of the genus was published by Suessenguth (1953). Since then, only regional Rhamnaceae tribe Paliureae Reissek ex Endl. was treatments and revisions have been published, most reinstated by Richardson et al. (2000b), after the first notably by Johnston (1963, 1964, 1972), Bhandari & molecular analysis of the family (Richardson et al. Bhansali (2000), Chen & Schirarend (2007) and Cahen 2000a). It consists of three genera, Hovenia Thunb., et al. (in press). For Australia, the genus as a whole was Paliurus Tourn. ex Mill. and Ziziphus Mill., which last reviewed by Bentham (1863), with subsequent until then were assigned to the tribes Rhamneae regional treatments by Wheeler (1992) and Rye (1997) Horan. -
Phylogenetic Analysis of Vitaceae Based on Plastid Sequence Data
PHYLOGENETIC ANALYSIS OF VITACEAE BASED ON PLASTID SEQUENCE DATA by PAUL NAUDE Dissertation submitted in fulfilment of the requirements for the degree MAGISTER SCIENTAE in BOTANY in the FACULTY OF SCIENCE at the UNIVERSITY OF JOHANNESBURG SUPERVISOR: DR. M. VAN DER BANK December 2005 I declare that this dissertation has been composed by myself and the work contained within, unless otherwise stated, is my own Paul Naude (December 2005) TABLE OF CONTENTS Table of Contents Abstract iii Index of Figures iv Index of Tables vii Author Abbreviations viii Acknowledgements ix CHAPTER 1 GENERAL INTRODUCTION 1 1.1 Vitaceae 1 1.2 Genera of Vitaceae 6 1.2.1 Vitis 6 1.2.2 Cayratia 7 1.2.3 Cissus 8 1.2.4 Cyphostemma 9 1.2.5 Clematocissus 9 1.2.6 Ampelopsis 10 1.2.7 Ampelocissus 11 1.2.8 Parthenocissus 11 1.2.9 Rhoicissus 12 1.2.10 Tetrastigma 13 1.3 The genus Leea 13 1.4 Previous taxonomic studies on Vitaceae 14 1.5 Main objectives 18 CHAPTER 2 MATERIALS AND METHODS 21 2.1 DNA extraction and purification 21 2.2 Primer trail 21 2.3 PCR amplification 21 2.4 Cycle sequencing 22 2.5 Sequence alignment 22 2.6 Sequencing analysis 23 TABLE OF CONTENTS CHAPTER 3 RESULTS 32 3.1 Results from primer trail 32 3.2 Statistical results 32 3.3 Plastid region results 34 3.3.1 rpL 16 34 3.3.2 accD-psa1 34 3.3.3 rbcL 34 3.3.4 trnL-F 34 3.3.5 Combined data 34 CHAPTER 4 DISCUSSION AND CONCLUSIONS 42 4.1 Molecular evolution 42 4.2 Morphological characters 42 4.3 Previous taxonomic studies 45 4.4 Conclusions 46 CHAPTER 5 REFERENCES 48 APPENDIX STATISTICAL ANALYSIS OF DATA 59 ii ABSTRACT Five plastid regions as source for phylogenetic information were used to investigate the relationships among ten genera of Vitaceae. -
Ceanothus Crassifolius Torrey NRCS CODE: Family: Rhamnaceae (CECR) Order: Rhamnales Subclass: Rosidae Class: Magnoliopsida
I. SPECIES Ceanothus crassifolius Torrey NRCS CODE: Family: Rhamnaceae (CECR) Order: Rhamnales Subclass: Rosidae Class: Magnoliopsida Lower right: Ripening fruits, two already dehisced. Lower center: Longitudinal channeling in stems of old specimen, typical of obligate seeding Ceanothus (>25 yr since last fire). Note dark hypanthium in center of white flowers. Photos by A. Montalvo. A. Subspecific taxa 1. C. crassifolius Torr. var. crassifolius 2. C. crassifolius Torr. var. planus Abrams (there is no NRCS code for this taxon) B. Synonyms 1. C. verrucosus Nuttal var. crassifolius K. Brandegee (Munz & Keck 1968; Burge et al. 2013) 2. C. crassifolius (in part, USDA PLANTS 2019) C. Common name 1. hoaryleaf ceanothus, sometimes called thickleaf ceanothus or thickleaf wild lilac (Painter 2016) 2. same as above; flat-leaf hoary ceanothus and flat-leaf snowball ceanothus are applied to other taxa (Painter 2016) D. Taxonomic relationships Ceanothus is a diverse genus with over 50 taxa that cluster in to two subgenera. C. crassifolius has long been recognized as part of the Cerastes group of Ceanothus based on morphology, life-history, and crossing studies (McMinn 1939a, Nobs 1963). In phylogenetic analyses based on RNA and chloroplast DNA, Hardig et al. (2000) found C. crassifolius clustered into the Cerastes group and in each analysis shared a clade with C. ophiochilus. In molecular and morphological analyses, Burge et al. (2011) also found C. crassifolius clustered into Cerastes. Cerastes included over 20 taxa and numerous subtaxa in both studies. Eight Cerastes taxa occur in southern California (see I. E. Related taxa in region). E. Related taxa in region In southern California, the related Cerastes taxa include: C. -
Terr–3 Special-Status Plant Populations
TERR–3 SPECIAL-STATUS PLANT POPULATIONS 1.0 EXECUTIVE SUMMARY During 2001 and 2002, the review of existing information, agency consultation, vegetation community mapping, and focused special-status plant surveys were completed. Based on California Native Plant Society’s (CNPS) Electronic Inventory of Rare and Endangered Vascular Plants of California (CNPS 2001a), CDFG’s Natural Diversity Database (CNDDB; CDFG 2003), USDA-FS Regional Forester’s List of Sensitive Plant and Animal Species for Region 5 (USDA-FS 1998), U.S. Fish and Wildlife Service Species List (USFWS 2003), and Sierra National Forest (SNF) Sensitive Plant List (Clines 2002), there were 100 special-status plant species initially identified as potentially occurring within the Study Area. Known occurrences of these species were mapped. Vegetation communities were evaluated to locate areas that could potentially support special-status plant species. Each community was determined to have the potential to support at least one special-status plant species. During the spring and summer of 2002, special-status plant surveys were conducted. For each special-status plant species or population identified, a CNDDB form was completed, and photographs were taken. The locations were mapped and incorporated into a confidential GIS database. Vascular plant species observed during surveys were recorded. No state or federally listed special-status plant species were identified during special- status plant surveys. Seven special-status plant species, totaling 60 populations, were identified during surveys. There were 22 populations of Mono Hot Springs evening-primrose (Camissonia sierrae ssp. alticola) identified. Two populations are located near Mammoth Pool, one at Bear Forebay, and the rest are in the Florence Lake area. -
Polygonaceae of Alberta
AN ILLUSTRATED KEY TO THE POLYGONACEAE OF ALBERTA Compiled and writen by Lorna Allen & Linda Kershaw April 2019 © Linda J. Kershaw & Lorna Allen This key was compiled using informaton primarily from Moss (1983), Douglas et. al. (1999) and the Flora North America Associaton (2005). Taxonomy follows VAS- CAN (Brouillet, 2015). The main references are listed at the end of the key. Please let us know if there are ways in which the kay can be improved. The 2015 S-ranks of rare species (S1; S1S2; S2; S2S3; SU, according to ACIMS, 2015) are noted in superscript (S1;S2;SU) afer the species names. For more details go to the ACIMS web site. Similarly, exotc species are followed by a superscript X, XX if noxious and XXX if prohibited noxious (X; XX; XXX) according to the Alberta Weed Control Act (2016). POLYGONACEAE Buckwheat Family 1a Key to Genera 01a Dwarf annual plants 1-4(10) cm tall; leaves paired or nearly so; tepals 3(4); stamens (1)3(5) .............Koenigia islandica S2 01b Plants not as above; tepals 4-5; stamens 3-8 ..................................02 02a Plants large, exotic, perennial herbs spreading by creeping rootstocks; fowering stems erect, hollow, 0.5-2(3) m tall; fowers with both ♂ and ♀ parts ............................03 02b Plants smaller, native or exotic, perennial or annual herbs, with or without creeping rootstocks; fowering stems usually <1 m tall; fowers either ♂ or ♀ (unisexual) or with both ♂ and ♀ parts .......................04 3a 03a Flowering stems forming dense colonies and with distinct joints (like bamboo -
A Phylogenetic Analysis of Rhamnaceae Using Rbcl and Trnl-F Plastid DNA Sequences James E. Richardson
A Phylogenetic Analysis of Rhamnaceae using rbcL and trnL-F Plastid DNA Sequences James E. Richardson; Michael F. Fay; Quentin C. B. Cronk; Diane Bowman; Mark W. Chase American Journal of Botany, Vol. 87, No. 9. (Sep., 2000), pp. 1309-1324. Stable URL: http://links.jstor.org/sici?sici=0002-9122%28200009%2987%3A9%3C1309%3AAPAORU%3E2.0.CO%3B2-5 American Journal of Botany is currently published by Botanical Society of America. Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/about/terms.html. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/journals/botsam.html. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. The JSTOR Archive is a trusted digital repository providing for long-term preservation and access to leading academic journals and scholarly literature from around the world. The Archive is supported by libraries, scholarly societies, publishers, and foundations. It is an initiative of JSTOR, a not-for-profit organization with a mission to help the scholarly community take advantage of advances in technology. -
Fallopia Japonica – Japanese Knotweed
Fallopia japonica – Japanese knotweed Japanese knotweed, sometimes referred to What is it? as donkey rhubarb for its sour red spring shoots, is a perennial plant in the Buckwheat family (Polygonaceae). It has large broad green leaves; tall, thick, sectioned and somewhat reddish zigzagging stems; and racemes of small papery flowers in summer. Photo by Liz West 2007 Other scientific names (synonyms) for Japanese knotweed are Reynoutria japonica and Polygonum cuspidatum. When does it grow? Shoots emerge from rhizomes (modified underground stems) from late March to mid-April. A spring freeze or deep frost can top kill new growth, but new shoots readily crop up from the hardy rootstalks. Growth continues rapidly once the weather begins to warm reaching heights up to 10 feet or greater by summer. R. Buczynski 2020 4.15.2020 Where is it from? Japanese knotweed is native to eastern Asia and was introduced to the United Kingdom in the 1800’s as a vigorous garden ornamental. Before becoming illegal to plant in England it was horticulturally introduced from the UK to the United States. Where is it now? Japanese knotweed has been reported extensively in the Northeastern U. S. and is currently present in all three counties (Hunterdon, Morris, and Somerset) within the upper Raritan watershed where it continues to spread into moist disturbed areas along waterways. Photo by Roger Kidd © Why is it invasive? Although knotweed can spread by seed, it is most effective at spreading underground via rhizomes that extend outward as well as downward, producing new shoots up to 70 feet away. If detached from the plant, small fragments of rhizome can survive and produce new plants wherever they land. -
Botolph's Bridge, Hythe Redoubt, Hythe Ranges West And
Folkestone and Hythe Birds Tetrad Guide: TR13 G (Botolph’s Bridge, Hythe Redoubt, Hythe Ranges West, and Nickolls Quarry) The tetrad TR13 G contains a number of major local hotspots, with Nickolls Quarry, the Botolph’s Bridge area and part of Hythe Ranges located within its boundaries. As a consequence the tetrad has the richest diversity of breeding birds in the local area, with 71 species having a status of at least possible in the latest BTO Atlas survey. It also had the highest total of species (125) in the winter Atlas survey. Sadly a major housing development is now in progress at the Nickolls Quarry site and much of the best habitat is now being disturbed or lost. Nickolls Quarry has been watched since the late 1940s, though early coverage was patchy, particularly in the 1960s and 1970s. As a working quarry the site has undergone significant changes during this time, expanding from two small pits to a much larger area of open water, some of which has since been backfilled. During 2001 to 2004 a series of shallow pools were created which proved particularly attractive to waders. Nickolls Quarry in 1952 Nickolls Quarry in 1998 Looking roughly northwards across the 'old pit' Looking south-west across the site towards the Hythe Roughs towards Dungeness Although a major housing development is underway on the site it still contains some interesting habitats. The lake is easily the largest area of open water in the local area and so remains one of the best areas for wildfowl, particularly during cold weather, for example in December 2010 when there were peak counts of 170 Wigeon, 107 Coot, 104 Pochard, 100 Teal, 53 Tufted Duck, 34 Gadwall, 18 Mute Swan, 12 Pintail, 10 Bewick’s Swan, 8 Shoveler, singles of Goldeneye and Goosander, and 300 White-fronted Geese flew over.