Attachment H: Life History and Habitat Requirements of Fish Species In
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Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
PREHISTORIC FORAGING PATTERNS at CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA a Thesis Presented to the Faculty of the Department Of
PREHISTORIC FORAGING PATTERNS AT CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA A Thesis Presented to the Faculty of the Department of Anthropology California State University, Sacramento Submitted in partial satisfaction of the requirements for the degree of MASTER OF ARTS in Anthropology by Justin Blake Cairns SUMMER 2016 © 2016 Justin Blake Cairns ALL RIGHTS RESERVED ii PREHISTORIC FORAGING PATTERNS AT CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA A Thesis by Justin Blake Cairns Approved by: ________________________________, Committee Chair Mark E. Basgall, Ph.D. ________________________________, Second Reader Jacob L. Fisher, Ph.D. ____________________________ Date iii Student: Justin Blake Cairns I certify that this student has met the requirements for format contained in the University format manual, and that this thesis is suitable for shelving in the Library and credit is to be awarded for the thesis. __________________________________, Graduate Coordinator _______________ Jacob Fisher, Ph.D. Date Department of Anthropology iv Abstract of PREHISTORIC FORAGING PATTERNS AT CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA by Justin Blake Cairns Subsistence studies conducted on regional archaeological deposits indicate that in the Sacramento Delta, as in the rest of the Central Valley, there is a decrease in foraging efficiency during the Late Period. A recently excavated site, CA-SAC-47, provides direct evidence of subsistence strategies in the form of faunal and plant remains. This faunal assemblage is compared to direct evidence of subsistence from Delta sites SAC-42, SAC-43, SAC-65, SAC-145, and SAC-329. The results and implications of this direct evidence are used to address site variability and resource selectivity. ___________________________________, Committee Chair Mark E. -
Speckled Dace, Rhinichthys Osculus, in Canada, Prepared Under Contract with Environment and Climate Change Canada
COSEWIC Assessment and Status Report on the Speckled Dace Rhinichthys osculus in Canada ENDANGERED 2016 COSEWIC status reports are working documents used in assigning the status of wildlife species suspected of being at risk. This report may be cited as follows: COSEWIC. 2016. COSEWIC assessment and status report on the Speckled Dace Rhinichthys osculus in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. xi + 51 pp. (http://www.registrelep-sararegistry.gc.ca/default.asp?lang=en&n=24F7211B-1). Previous report(s): COSEWIC 2006. COSEWIC assessment and update status report on the speckled dace Rhinichthys osculus in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. vi + 27 pp. (www.sararegistry.gc.ca/status/status_e.cfm). COSEWIC 2002. COSEWIC assessment and update status report on the speckled dace Rhinichthys osculus in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. vi + 36 pp. (www.sararegistry.gc.ca/status/status_e.cfm). Peden, A. 2002. COSEWIC assessment and update status report on the speckled dace Rhinichthys osculus in Canada, in COSEWIC assessment and update status report on the speckled dace Rhinichthys osculus in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. 1-36 pp. Peden, A.E. 1980. COSEWIC status report on the speckled dace Rhinichthys osculus in Canada. Committee on the Status of Endangered Wildlife in Canada. 1-13 pp. Production note: COSEWIC would like to acknowledge Andrea Smith (Hutchinson Environmental Sciences Ltd.) for writing the status report on the Speckled Dace, Rhinichthys osculus, in Canada, prepared under contract with Environment and Climate Change Canada. -
United States Department of the Interior
United States Department of the Interior FISH AND WILDLIFE SERVICE Oregon Fish and Wildlife Office 2600 SE 98th Avenue, Suite 100 Portland, Oregon 97266 Phone: (503) 231-6179 FAX: (503) 231-6195 Reply To: 8330.F0047(09) File Name: CREP BO 2009_final.doc TS Number: 09-314 TAILS: 13420-2009-F-0047 Doc Type: Final Don Howard, Acting State Executive Director U.S. Department of Agriculture Farm Service Agency, Oregon State Office 7620 SW Mohawk St. Tualatin, OR 97062-8121 Dear Mr. Howard, This letter transmits the U.S. Fish and Wildlife Service’s (Service) Biological and Conference Opinion (BO) and includes our written concurrence based on our review of the proposed Oregon Conservation Reserve Enhancement Program (CREP) to be administered by the Farm Service Agency (FSA) throughout the State of Oregon, and its effects on Federally-listed species in accordance with section 7 of the Endangered Species Act (Act) of 1973, as amended (16 U.S.C. 1531 et seq.). Your November 24, 2008 request for informal and formal consultation with the Service, and associated Program Biological Assessment for the Oregon Conservation Reserve Enhancement Program (BA), were received on November 24, 2008. We received your letter providing a 90-day extension on March 26, 2009 based on the scope and complexity of the program and the related species that are covered, which we appreciated. This Concurrence and BO covers a period of approximately 10 years, from the date of issuance through December 31, 2019. The BA also includes species that fall within the jurisdiction of the National Oceanic and Atmospheric Administration’s Fisheries Service (NOAA Fisheries Service). -
21 - 195 100 2816 100 N-Taxa 10 - 5 - 10
AN ICTHYOARCHAEOLOGICAL STUDY OF DIETARY CHANGE IN THE CALIFORNIA DELTA, CONTRA COSTA COUNTY JASON I. MISZANIEC, JELMER W. EERKENS UNIVERSITY OF CALIFORNIA, DAVIS ERIC J. BARTELINK CALIFORNIA STATE UNIVERSITY, CHICO This paper presents the results from a diachronic study of fish remains from two neighboring archaeological mound sites in Contra Costa county, Hotchkiss Mound (CA-CCO-138; 850–450 cal BP) and Simone Mound (CA-CCO-139; 1200–950 cal BP). A previous study (Eerkens and Bartelink, in review) using stable isotope data from individual burials suggested dietary differences between these two sites. This study examines fish remains as a potential source of these dietary differences. Fish remains from shovel probes were identified and quantified. Results indicate that both assemblages are dominated by Sacramento perch (30% and 36%, respectively) and minnows (chub, hitch, pikeminnow; 65% and 57% respectively). Similarities in the ichthyofaunal assemblages suggest that the fish species consumed remained relatively consistent between the Middle and Late Periods, indicating that variation in human bone collagen stable isotope values was not likely driven by differences in the species of fish consumed. The Sacramento-San Joaquin Delta (or the California Delta) is an expansive inland river delta and estuary system. Although this region has rich biodiversity in mammals and birds, the Delta is especially known for its diverse and unique ichthyofaunal communities, which are composed of freshwater, anadromous, and euryhaline species. Although certain species are present year-round, others are seasonally available, during migration and/or spawning events. Prehistoric hunter gatherers, who occupied the Delta for millennia, took full advantage of the ichthyofaunal resources available to them, as is evident from rich fish collections from midden deposits and settlement locations. -
Sacramento Pikeminnow Migration Record
Notes Sacramento Pikeminnow Migration Record Dennis A. Valentine, Matthew J. Young, Frederick Feyrer* U.S. Geological Survey, California Water Science Center, 6000 J Street, Sacramento, California 95819 Abstract Sacramento Pikeminnow Ptychocheilus grandis is a potamodromous species endemic to mid- and low-elevation streams and rivers of Central and Northern California. Adults are known to undertake substantial migrations, typically associated with spawning, though few data exist on the extent of these migrations. Six Sacramento Pikeminnow implanted with Downloaded from http://meridian.allenpress.com/jfwm/article-pdf/11/2/588/2883906/i1944-687x-11-2-588.pdf by guest on 29 September 2021 passive integrated transponder tags in the Sacramento–San Joaquin Delta were detected in Cottonwood and Mill creeks, tributaries to the Sacramento River in Northern California, between April 2018 and late February 2020. Total travel distances ranged from 354 to 432 km, the maximum of which exceeds the previously known record by at least 30 km. These observations add to a limited body of knowledge regarding the natural history of Sacramento Pikeminnow and highlight the importance of the river–estuary continuum as essential for this migratory species. Keywords: Cyprinidae; migration; movement; potamodromy; Ptychocheilus grandis Received: May 15, 2020; Accepted: August 31, 2020; Published Online Early: September 2020; Published: December 2020 Citation: Valentine DA, Young MJ, Feyrer F. 2020. Sacramento Pikeminnow migration record. Journal of Fish and Wildlife Management 11(2):588–592; e1944-687X. https://doi.org/10.3996/JFWM-20-038 Copyright: All material appearing in the Journal of Fish and Wildlife Management is in the public domain and may be reproduced or copied without permission unless specifically noted with the copyright symbol &. -
Local-Scale Invasion Pathways and Small Founder Numbers in Introduced Sacramento Pikeminnow (Ptychocheilus Grandis)
Conserv Genet (2014) 15:1–9 DOI 10.1007/s10592-013-0516-5 RESEARCH ARTICLE Local-scale invasion pathways and small founder numbers in introduced Sacramento pikeminnow (Ptychocheilus grandis) Andrew P. Kinziger • Rodney J. Nakamoto • Bret C. Harvey Received: 10 January 2013 / Accepted: 13 July 2013 / Published online: 26 July 2013 Ó Springer Science+Business Media Dordrecht 2013 Abstract Given the general pattern of invasions with Keywords Invasion genetics Á Effective founder severe ecological consequences commonly resulting from number Á Genetic diversity Á Exotic species Á multiple introductions of large numbers of individuals on Sacramento pikeminnow Á Ptychocheilus grandis the intercontinental scale, we explored an example of a highly successful, ecologically significant invader intro- duced over a short distance, possibly via minimal propa- gule pressure. The Sacramento pikeminnow (Ptychocheilus Introduction grandis) has been introduced to two coastal rivers in northern California where it poses a risk to threatened and Invasive species with strong ecological effects are com- endangered fishes. We assayed variation in seven micro- monly established via substantial propagule pressure on the satellite loci and one mitochondrial DNA gene to identify intercontinental scale. While propagule pressure is clearly the source populations and estimate founder numbers for an important parameter for predicting invasion success these introductions. Our analysis suggests that successful (Colautti et al. 2006; Drake and Lodge 2006; Garcı´a-Ber- invasion of the Eel River was likely the result of a single thou 2007; Lockwood et al. 2005; Marchetti et al. 2004), transfer of 3–4 effective founders from nearby within the examples of ecologically significant invasions from single species’ native range: Clear Lake or its outflow Cache introductions and very small founding populations are Creek. -
California's Freshwater Biodiversity
CALIFORNIA’S FRESHWATER BIODIVERSITY IN A CONTINENTAL CONTEXT Science for Conservation Technical Brief November 2009 Department of Conservation Science The Nature Conservancy, California Freshwater Biodiversity in California 2 California’s Freshwater Ecoregions in a Continental Context A Science for Conservation Technical Brief The Nature Conservancy, California The Freshwater Conservation Challenge Worldwide, freshwater species and habitats are, on average, more imperiled than their terrestrial or marine counterparts. In continental North America alone, 40% of freshwater fish are at risk of extinction or already extinct (Jelks et al. 2008). Despite concerns over the health of the world’s freshwater species and systems (Millennium Ecosystem Assessment 2005), there have been few attempts to systematically describe patterns of freshwater biodiversity on Earth. This is due in part to the lack of comprehensive, synthesized data on the distributions of freshwater species (Abell 2008). Without a robust biodiversity foundation, conservationists face challenges in setting freshwater protection priorities and agendas at the global, continental and regional scales. Freshwater Ecoregions of the World Project To fill this void, in 2008, World Wildlife Fund-US, The Nature Conservancy, and more than 130 scientists participated in the Freshwater Ecoregions of the World (FEOW) project. FEOW identified 426 freshwater ecoregions and provided information on freshwater biogeography and biodiversity; similar analyses exist for the terrestrial and marine realms. Until this effort, global biodiversity classification and planning efforts had been characterized using land-based parameters. FEOW is the first attempt to describe the world from a freshwater perspective. With this information, scientists and conservationists can more clearly compare freshwater biota and their conservation needs across large geographies. -
Redescription of the Tyee Sucker, Catostomus Tsiltcoosensis (Catostomidae)
Western North American Naturalist Volume 70 Number 3 Article 1 10-11-2010 Redescription of the Tyee Sucker, Catostomus tsiltcoosensis (Catostomidae) Jes Kettratad Oregon State University, Corvallis, [email protected] Douglas F. Markle Oregon State University, Corvallis, [email protected] Follow this and additional works at: https://scholarsarchive.byu.edu/wnan Recommended Citation Kettratad, Jes and Markle, Douglas F. (2010) "Redescription of the Tyee Sucker, Catostomus tsiltcoosensis (Catostomidae)," Western North American Naturalist: Vol. 70 : No. 3 , Article 1. Available at: https://scholarsarchive.byu.edu/wnan/vol70/iss3/1 This Article is brought to you for free and open access by the Western North American Naturalist Publications at BYU ScholarsArchive. It has been accepted for inclusion in Western North American Naturalist by an authorized editor of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. Western North American Naturalist 70(3), © 2010, pp. 273–287 REDESCRIPTION OF THE TYEE SUCKER, CATOSTOMUS TSILTCOOSENSIS (CATOSTOMIDAE) Jes Kettratad1,2 and Douglas F. Markle1,3 ABSTRACT.—We resurrect Catostomus tsiltcoosensis, the Tyee sucker of Oregon coastal rivers, from the synonymy of Catostomus macrocheilus and compare it with its congeners. Catostomus tsiltcoosensis is superficially similar to dis- junctly distributed Catostomus occidentalis of the Sacramento drainage and Catostomus ardens of the Upper Snake River and Bonneville Basin. However, the gill raker structure, wide frontoparietal fontanelle, location of the ninth cra- nial foramen, scale radii patterns, and cytochrome b sequences clearly align C. tsiltcoosensis with C. macrocheilus rather than C. occidentalis. Differences in counts of infraorbital pores and dorsal fin rays, in body depth proportions, and in cytochrome b sequences distinguish C. -
Section 10 Section 10 FISHERIES and AQUATIC RESOURCES
Section 10 Section 10 FISHERIES AND AQUATIC RESOURCES SOURCES OF DATA......................................................................................................................... 10-1 HISTORICAL CONTEXT .................................................................................................................. 10-1 HABITAT TYPES.............................................................................................................................. 10-2 Sacramento River ............................................................................................................ 10-2 Tehama West Tributary Streams ................................................................................. 10-2 DESCRIPTION OF FISH SPECIES ................................................................................................... 10-5 Native Fish Species ......................................................................................................... 10-5 Non-Native Fish Species............................................................................................... 10-17 THREATENED AND ENDANGERED SPECIES.............................................................................. 10-24 CRITICAL FISHERIES AND AQUATIC HABITAT......................................................................... 10-25 SPECIES OF SPECIAL CONCERN................................................................................................. 10-27 POTENTIAL ADVERSE CONDITIONS ......................................................................................... -
CHAPTER 4.3 Fisheries Resources
CHAPTER 4.3 Fisheries Resources 4.3.1 Introduction This chapter describes the existing fisheries resources within the area of the Proposed Project. Section 4.3.2, “Environmental Setting” describes the regional and project area environmental setting as it relates to fisheries resources. Section 4.3.3, “Regulatory Framework” details the federal, state, and local laws related to fisheries resources. Potential impacts to fisheries resources resulting from the Proposed Project are analyzed in Section 4.3.4, “Impact Analysis” in accordance with the California Environmental Quality Act (CEQA) significance criteria (CEQA Guidelines, Appendix G) and mitigation measures are proposed that could reduce, eliminate, or avoid such impacts, if feasible. Other impacts related to fisheries resources addressed in other chapters as follows: impacts to hydrology are addressed in Chapter 4.1, “Hydrology,” impacts to water quality are addressed in Chapter 4.2, “Water Quality,” and impacts to recreation are addressed in Chapter 4.5, “Recreation.” 4.3.2 Environmental Setting Russian River Watershed The Russian River measures slightly over 100 miles in length and the watershed drains roughly 1,485 square miles in Sonoma and Mendocino Counties. The watershed consists of a series of valleys surrounded by two mountainous ranges, the Mendocino Highlands to the West and the Mayacamas Mountains to the east. The Santa Rosa Plain, Alexander Valley, Hopland Valley, Ukiah Valley, Redwood Valley, Potter Valley and other small valleys comprise about 15 percent of the watershed. The remainder of the watershed area is hilly to mountainous. Principal tributaries of the Russian River include the East Fork Russian River, Big Sulphur Creek, Maacama Creek, Dry Creek, Mark West Creek, and Austin Creek. -
California Roach (Hesperoleucus Symmetricus)Intheeel River of Northwestern California: Native Or Introduced?
Environ Biol Fish (2019) 102:771–781 https://doi.org/10.1007/s10641-019-00870-x California roach (Hesperoleucus symmetricus)intheEel River of northwestern California: native or introduced? Andrew P. Kinziger & Rodney J. Nakamoto & Andy Aguilar & Bret C. Harvey Received: 26 September 2018 /Accepted: 3 March 2019 /Published online: 15 March 2019 # Springer Nature B.V. 2019 Abstract To explore the history of California roach findings for two other California cyprinids introduced (Hesperoleucus symmetricus) in the Eel River, we com- into the Eel River from adjacent drainages, Sacramento piled mitochondrial DNA data for the putatively intro- pikeminnow (Ptychocheilus grandis) and speckled dace duced Eel River population and comparative collections (Rhinichthys osculus). from throughout the native range. Consistent with an introduction scenario, we found that: 1) one haplotype Keywords Invasion genetics . Mitochondrial DNA . occurred at high frequency in the Eel River, Russian Genetic diversity. Introduced species . California roach . River and Clear Lake populations, making the Russian Hesperoleucus symmetricus River and Clear Lake likely source areas, and 2) the introduced population exhibited reduced haplotype di- versity in comparison to populations from the native Introduction range. However, we also detected four private haplo- types in the putatively introduced population, despite Efforts to slow the rate of fish introductions would examining 269 individuals from the likely source areas. benefit from better understanding of invasion pathways. Extrapolation of the haplotype richness of the likely Much effort has focused on intercontinental introduc- source population suggested that even with the large tions. However, particularly for drainages with relative- sample size, many haplotypes in the source population ly few species, the possibility of introductions from remained uncollected.