Annual Symposium of the Society for the Study of Inborn Errors of Metabolism Istanbul, Turkey, 31 August– 3 September 2010

Total Page:16

File Type:pdf, Size:1020Kb

Annual Symposium of the Society for the Study of Inborn Errors of Metabolism Istanbul, Turkey, 31 August– 3 September 2010 J Inherit Metab Dis (2010) 33 (Suppl 1):S1–S197 DOI 10.1007/s10545-010-9163-x ABSTRACTS Annual Symposium of the Society for the Study of Inborn Errors of Metabolism Istanbul, Turkey, 31 August– 3 September 2010 Contents 01. Amino Acids 012-P Mutations in fumarylacetoacetate hydrolase gene and genotype-phenotype relation 001-P Sulphite oxidase deficiency in three Malaysian patients: clinical, RK Ozgul, A Guzel, L Mesci, HS Sivri, M Kilic, F Ozcay, biochemical and molecular findings M Gunduz, HI Aydin, D Aliefendioglu, T Coskun, BC Chen, B Shanti, GS Chng, MD Norsiah, G Vigneswari, A Dursun S22 WT Keng, LH Ngu S20 013-P Mutation profile of BCKDHA, BCKDHB AND DBT genes for 002-P Acute tyrosine administration inhibited mitochondrial energy maple syrup urine disease in Turkey metabolism in cerebral cortex and liver of young rats RK Ozgul, A Guzel, H Dundar, D Yucel, A Yilmaz, O Unal, EL Streck, G Scaini, GK Ferreira, N Rochi, J Benedet, A Tokatli, HS Sivri, T Coskun, A Dursun S23 GC Ferreira, PF Schuck S20 014-A Molybdenum cofactor deficiency in Tunisian patients 003-P In vitro effect of tyrosine on energy metabolism parameters in MB Hammami, F Nasrallah, S Hadj Taieb, S Omar, H Sanheji, cerebral cortex and liver of young rats N Tebib, MF Ben Dridi, M Feki, N Kaabachi S23 GK Ferreira, G Scaini, GC Ferreira, PF Schuck, EL Streck S20 015-P Nonketotic hyperglycinemia in Tunisia: about 34 patients 004-P A rapid, sensitive gas chromatography—mass spectrometry S Hadj Taieb, F Nasrallah, MB Hammami, M Romdhane, method for quantitation of leukocyte cystine M Elasmi, H Sanheji, S Omar, M Feki, N Kaabachi S23 GF van der Watt, B Bahar, F Omar, B Bergstedt S20 016-P Profile of inherited disorders of aminoacids metabolism other than 005-O Fatal cerebral edema associated with serine deficiency in CSF phenylketonuria in Tunisia IMLW Keularts, PLJM Leroy, ME Rubio-Gozalbo, LJM Spaapen, S Hadj Taieb, M Romdhane, F Nasrallah, MB Hammami, J Weber, L Dorland, TJ de Koning, NM Verhoeven-Duif S21 M Elasmi, N Tebib, S Omar, H Sanheji, MF Ben Dridi, M Feki, N Kaabachi S23 006-P Coexistence of molybdenum cofactor deficiency and pyloric stenosis 017-P Familial hyperlysinaemia with progressive spastic MGiżewska, H Romanowska, JO Sass, M Walter, quadriplegia—hyperlysinaemia type 2 J Sykut-Cegielska, G Hnatyszyn, E Krzywińska-Zdeb, K Tuschl, PB Mills, PT Clayton S24 E Gawrych, A Walecka, M Tuziak S21 018-P Management of type I tyrosinemia: a Tunisian experience 007-P In vivo intracerebroventricular administration of ornithine and H Azzouz, A Ben Chehida, M Ben Romdhane, H Ben Turkia, homocitrulline inhibits mitochondrial energy production and R Ben Abdelaziz, F Nasrallah, N Chouchene, K Monastiri, induce oxidative stress in cerebral cortex of young rats N Tebib, N Kaabachi, MS Abdelmoula, MF Ben Dridi S24 CM Viegas, EN Busanello, GC Ferreira, AP Moura, AM Tonin, 019-P Attention deficit in the patients with tyrosinemia type 1 M Grings, L Ritter, PF Schuck, ATS Wyse, M Wajner S21 M Pohorecka, A Jakubowska-Winecka, M Biernacka, M Biernacki, 008-P Intrastriatal administration of lysine induces oxidative and K Kusmierska, A Kowalik, T Wolanczyk, J Sykut-Cegielska S24 bioenergetics damage in striatum of developing rats 020-P Intermittent choreoathetosis in a 9-year-old boy with late onset B Seminotti, CG Fernandes, AU Amaral, A Zanatta, G Leipnitz, NKH caused by a novel homozygous missense mutation in the CS Dutra Filho, M Wajner S21 GLDC gene 009-P Neurochemical evidence that the major metabolites accumulating C Brunel-Guitton, B Casey, D Hewes, H Vallance, in maple syrup urine disease disturb mitochondrial bioenergetic in S Stockler-Ipsiroglu, S Mercimek-Mahmutoglu S24 brain of young rats 021-P Experience with an LC-MS/MS method for analysis of branched AU Amaral, G Leipnitz, CG Fernandes, B Seminotti, PF Schuck, chain amino acids in dried blood spots A Zanatta, P Eichler, C Cecatto, CS Dutra Filho, M Wajner S22 A Alodaib, V Wiley, K Sim, K Carpenter, B Wilcken S25 010-P Na+,K+-ATPase activity and gene expression in rats subjected to 022-P Pulmonary hypertension associated with inborn errors of metabolism: experimental hyperprolinemia report of 7 cases AGK Ferreira, FM Stefanello, AA Cunha, MJ da Cunha, TCB Pereira, M Del Toro, A Arranz, E Riudor, A Moreno, A Ribes, P Briones, CD Bonan, MR Bogo, CA Netto, M Wajner, ATS Wyse S22 T Armengué, M Roig S25 011-P Follow up of patients treated for tyrosinemia type I: blood spot 024-P Improving patient experience in cystinuria: can serial urine profiles analysis of nitisinone and succinylacetone replace timed urine collections in the follow-up of patients with J Sander, N Janzen, M Peter, G Gokcay, M Demirkol, cystinuria? IOzer,AMDas S22 B Lopez, C Tomson, M De Hora, H Kemp S25 S2 J Inherit Metab Dis (2010) 33 (Suppl 1):S1–S197 025-P A novel rapid UPLC/MSMS method for the quantitation of cystine 042-P Diagnostic relevance of phenylalanine/tyrosine ratios (PHE/TYR) in urine S Scholl-Burgi, D Fuchs, E Haberlandt, K Rostásy, B Lopez, M DeHora, M Williams, H Kemp S26 D Karall S31 026-P Cerebral accumulation of 3-hydroxyisovaleric acid in adults until 043-O Successful treatment of molybdenum cofactor deficiency type A recently unaware of having 3-methylcrotonyl-coa carboxylase with cyclic pyranopterin monophosphate (cPMP) in five patients (MCC) deficiency A Veldman, B Schwahn, P Galloway, F van Spronsen, K Bergman, M van der Graaf, UFH Engelke, E Morava, MCH Janssen, MC de Vries, I Weis, T Nuesslein, R Gianello, JO Sass, AA Beleidi, LAJ Kluijtmans, B Góraj, A Heerschap RA Wevers S26 JA Santamaria-Araujo, G Schwarz S31 027-O Pyrroline-5-carboxylate (P5C) synthase deficiency: novel clinical 044-P Ketogenic diet in nonketotic hyperglycinemia and biochemical insights V Bzduch, D Behulova, M Kolnikova, J Payerova, D Martinelli, J Haeberle, S Colafati, C Giunta, I Hausser, K Fabriciova S31 BM Goffredo, R Carrozzo, MC Meschini, E Bevivino, S Boenzi, 045-P Reversible cause of myopathy in a case of lysinuric protein intolerance M Baumgartner, C Dionisi-Vici S26 M Wood, S Harmar, M McSweeney, L Abulhoul S31 028-P Tyrosinemia type 1- effect of metabolites on five different 046-P Sample stability and reproducibility of white cell cystine DNA- repair enzymes measurement in cystinosis YT Bliksrud, A Ellingsen, M Bjørås S26 C Turner, RN Dalton S32 029-P Hereditary tyrosinaemia type I: data of a Spanish registry 047-P Nationwide survey of extended newborn screening by tandem mass M Del Toro, ML Couce, L Aldamiz, J Dalmau, F Sánchez, spectrometry in Taiwan G Pintos, J Manzanares, M Bueno, D Gil, M Gil, L Gomez, E Lopez, C Chiang, H Ho, S Kao, D Niu, Y Chien, W Hwu, S Chiang, VNavas S27 C Kao, T Liu, H Chiang, K Hsiao S32 030-P Defect in proline synthesis: pyrroline-5-carboxylate reductase 1 048-P Deficiency of molybdenum cofactor biosynthesis due to a novel deficiency in patients with cutis laxa and mental retardation mutation in the MOCS2 genes in a child with short stature R Kretz, A Kariminejad, M Rohrbach, D Bartholdi, B Bozorgmehr, JA Arranz, G Pintos, L Montlleó, M Gutiérrez, P Fernández, M Baumgartner, I Hausser, C Giunta, J Häberle S27 A Outeiral, E Riudor S32 031-P Maple syrup urine disease (MSUD) in Brazil: a cross-sectional 049-O Metabolic correction and long-term rescue of murine intermediate study of 41 patients maple syrup urine disease (iMSUD) using human amniotic S Herber, C Bittar, CBO Netto, ML De Barba, I Schwartz, epithelial cell transplantation (hAEC-Tx) R Giugliani, CFM Souza S27 KJ Skvorak, K Dorko, M Hansel, F Marongiu, V Tahan, 032-P New method to measure cystine in granulocytes using liquid T Bottiglieri, Q Sun, KM Gibson, SC Strom S32 chromatograhy-tandem mass spectrometry 050-P Rapid analysis of cystine for the diagnosis of renal calculi J García-Villoria, JM Hernández, A Arias, A Ribes S28 JP Veyssier, T Tanyalcin S33 033-O Glutamine synthetase deficiency in a 3 year old with severe neurological disease 02. Homocysteine J Häberle, P Paesold, S Kolker, G Hoffman, N Shahbeck, T Ben-Omran S28 051-P Siblings with methionine adenosyltransferase (MAT) I/III deficiency, presenting elevation of plasma total homocysteine and transient MRI 034-P Chronic form of tyrosinemia type 1 presented with rickets signs abnormalities in white matter lesions G Dikme, E Soyucen, G Zorer, N Canpolat, A Aydin, S Yamamoto, A Ogawa, E Ogawa S33 B Tuysuz S28 052-P Trimethylaminuria (TMAU) in a patient with homocystinuria on 035-O D-amino acids as diagnostic markers for inborn errors of betaine therapy—detection of a homozygous allelic variant in the metabolism FMO3 gene and subsequent beneficial effect of riboflavin WF Visser, Klomp LWJ, M Albersen, NM Verhoeven-Duif, NJ Manning, EJ Smith, MJ Sharrard, KE Allen, RJ Kirk S33 TJ de Koning S28 053-P End-stage renal failure in a young adult: an unusual presentation of 036-P Expanded newborn screening in the NICU population late-onset cobalamin C disease F Porta, S Tortorelli, D Gavrilov, D Oglesbee, K Raymond, I Kern, L Bonafé, V Bourquin, E Girardin, O Boulat, D Matern, P Rinaldo S29 MR Baumgartner, B Fowler, K Hadaya S33 037-P Successful treatment of two neonates with molybdenum cofactor 054-P Identification and functional characterization of a novel mutation in deficiency (MOCD) type A, using cyclic pyranopterine CBS gene monophosphate (CPMP) M Mendes, GS Salomons, I Tavares de Almeida, H Blom, I Rivera, BC Schwahn, PG Galloway, S Bowhay, A Veldman, JA Santamaria, P Leandr S34 G Schwarz S29 055-P Acute hyperhomocysteinemia alters platelets count and blood 038-P Amino acid analysis in dried
Recommended publications
  • Familial Nephropathy and Multiple Exostoses with Exostosin-1 (EXT1) Gene Mutation
    PATHOPHYSIOLOGY of the RENAL BIOPSY www.jasn.org Familial Nephropathy and Multiple Exostoses With Exostosin-1 (EXT1) Gene Mutation Ian S. D. Roberts* and Jonathan M. Gleadle† *Department of Cellular Pathology, John Radcliffe Hospital, Headley Way, Headington, Oxford, United Kingdom; and †Renal Unit, Level 6, Flinders Medical Centre, Bedford Park, South Australia, Australia ABSTRACT Glomerular deposition of fibrillar collagen is a characteristic finding of genetically mained in remission with trace protein- distinct conditions, including nail-patella syndrome and collagen type III glomeru- uria until cyclosporine was stopped 3.5 lopathy. A case of familial nephropathy in which steroid-sensitive nephrotic syn- yr later. Six months after this, she suf- drome and glomerular deposits of fibrillar collagen are associated with multiple fered another relapse of nephrotic exostoses due to mutation of the EXT1 gene is described. This gene encodes a syndrome that responded to 60 mg pred- glycosyltransferase required for synthesis of heparan sulfate glycosaminoglycans. nisolone and reintroduction of cyclo- There is deficiency of heparan sulfate and perlecan, together with accumulation of sporine. After a further relapse 18 mo collagens, in the matrix of EXT1-associated osteochondromas. Similar glomerular later and because of the development of basement membrane abnormalities could offer an explanation for both the renal adverse corticosteroid effects, she was ultrastructural changes and steroid-sensitive nephrotic syndrome. treated with a 2-mo course of cyclophos- phamide (2.5 mg/kg, orally). Ten years J Am Soc Nephrol 19: 450–453, 2008. doi: 10.1681/ASN.2007080842 after her initial presentation, she remains in full remission and off steroids. Renal function has remained normal through- A 37-yr-old woman presented with the history of renal disease and hearing im- out with a current serum creatinine of nephrotic syndrome.
    [Show full text]
  • The Landscape of Cancer Cell Line Metabolism
    The Landscape of Cancer Cell Line Metabolism The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Li, Haoxin, Shaoyang Ning, Mahmoud Ghandi, Gregory V. Kryukov, Shuba Gopal, Amy Deik, Amanda Souza, et. al. 2019. The Landscape of Cancer Cell Line Metabolism. Nature Medicine 25, no. 5: 850-860. Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:41899268 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Nat Med Manuscript Author . Author manuscript; Manuscript Author available in PMC 2019 November 08. Published in final edited form as: Nat Med. 2019 May ; 25(5): 850–860. doi:10.1038/s41591-019-0404-8. The Landscape of Cancer Cell Line Metabolism Haoxin Li1,2, Shaoyang Ning3, Mahmoud Ghandi1, Gregory V. Kryukov1, Shuba Gopal1, Amy Deik1, Amanda Souza1, Kerry Pierce1, Paula Keskula1, Desiree Hernandez1, Julie Ann4, Dojna Shkoza4, Verena Apfel5, Yilong Zou1, Francisca Vazquez1, Jordi Barretina4, Raymond A. Pagliarini4, Giorgio G. Galli5, David E. Root1, William C. Hahn1,2, Aviad Tsherniak1, Marios Giannakis1,2, Stuart L. Schreiber1,6, Clary B. Clish1,*, Levi A. Garraway1,2,*, and William R. Sellers1,2,* 1Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA 2Department
    [Show full text]
  • CRISPR Screening of Porcine Sgrna Library Identifies Host Factors
    ARTICLE https://doi.org/10.1038/s41467-020-18936-1 OPEN CRISPR screening of porcine sgRNA library identifies host factors associated with Japanese encephalitis virus replication Changzhi Zhao1,5, Hailong Liu1,5, Tianhe Xiao1,5, Zichang Wang1, Xiongwei Nie1, Xinyun Li1,2, Ping Qian2,3, Liuxing Qin3, Xiaosong Han1, Jinfu Zhang1, Jinxue Ruan1, Mengjin Zhu1,2, Yi-Liang Miao 1,2, Bo Zuo1,2, ✉ ✉ Kui Yang4, Shengsong Xie 1,2 & Shuhong Zhao 1,2 1234567890():,; Japanese encephalitis virus (JEV) is a mosquito-borne zoonotic flavivirus that causes ence- phalitis and reproductive disorders in mammalian species. However, the host factors critical for its entry, replication, and assembly are poorly understood. Here, we design a porcine genome-scale CRISPR/Cas9 knockout (PigGeCKO) library containing 85,674 single guide RNAs targeting 17,743 protein-coding genes, 11,053 long ncRNAs, and 551 microRNAs. Subsequently, we use the PigGeCKO library to identify key host factors facilitating JEV infection in porcine cells. Several previously unreported genes required for JEV infection are highly enriched post-JEV selection. We conduct follow-up studies to verify the dependency of JEV on these genes, and identify functional contributions for six of the many candidate JEV- related host genes, including EMC3 and CALR. Additionally, we identify that four genes associated with heparan sulfate proteoglycans (HSPGs) metabolism, specifically those responsible for HSPGs sulfurylation, facilitate JEV entry into porcine cells. Thus, beyond our development of the largest CRISPR-based functional genomic screening platform for pig research to date, this study identifies multiple potentially vulnerable targets for the devel- opment of medical and breeding technologies to treat and prevent diseases caused by JEV.
    [Show full text]
  • Progressive Encephalopathy and Central Hypoventilation Related to Homozygosity of NDUFV1 Nuclear Gene, a Rare Mitochondrial Disease
    Avens Publishing Group Inviting Innovations Open Access Case Report J Pediatr Child Care August 2019 Volume:5, Issue:1 © All rights are reserved by AL-Buali MJ, et al. AvensJournal Publishing of Group Inviting Innovations Progressive Encephalopathy Pediatrics & and Central Hypoventilation Child Care AL-Buali MJ*, Al Ramadhan S, Al Buali H, Al-Faraj J and Related to Homozygosity of Al Mohanna M Pediatric Department , Maternity Children Hospital , Saudi Arabia *Address for Correspondence: NDUFV1 Nuclear Gene, a Rare Al-buali MJ, Pediatric Consultant and Consultant of Medical Genetics, Deputy Chairman of Medical Genetic Unite, Pediatrics Department , Maternity Children Hospital, Al-hassa, Hofuf city, Mitochondrial Disease Saudi Arabia; E-mail: [email protected] Submission: 15 July 2019 Accepted: 5 August 2019 Keywords: Progressive encephalopathy; Central hypoventilation; Published: 9 August 2019 Nuclear mitochondrial disease; NDUFV1 gene Copyright: © 2019 AL-Buali MJ, et al. This is an open access article distributed under the Creative Commons Attribution License, which Abstract permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Background: Mitochondrial diseases are a group of disorders caused by dysfunctional organelles that generate energy for our body. Mitochondria small double-membrane organelles found in of the most common groups of genetic diseases with a minimum every cell of the human body except red blood cells. Mitochondrial diseases are sometimes caused by mutations in the mitochondrial DNA prevalence of greater than 1 in 5000 in adults. Mitochondrial diseases that affect mitochondrial function. Other mitochondrial diseases are can be present at birth but can be manifested also at any age [2].
    [Show full text]
  • High-Throughput, Pooled Sequencing Identifies Mutations in NUBPL And
    ARTICLES High-throughput, pooled sequencing identifies mutations in NUBPL and FOXRED1 in human complex I deficiency Sarah E Calvo1–3,10, Elena J Tucker4,5,10, Alison G Compton4,10, Denise M Kirby4, Gabriel Crawford3, Noel P Burtt3, Manuel Rivas1,3, Candace Guiducci3, Damien L Bruno4, Olga A Goldberger1,2, Michelle C Redman3, Esko Wiltshire6,7, Callum J Wilson8, David Altshuler1,3,9, Stacey B Gabriel3, Mark J Daly1,3, David R Thorburn4,5 & Vamsi K Mootha1–3 Discovering the molecular basis of mitochondrial respiratory chain disease is challenging given the large number of both mitochondrial and nuclear genes that are involved. We report a strategy of focused candidate gene prediction, high-throughput sequencing and experimental validation to uncover the molecular basis of mitochondrial complex I disorders. We created seven pools of DNA from a cohort of 103 cases and 42 healthy controls and then performed deep sequencing of 103 candidate genes to identify 151 rare variants that were predicted to affect protein function. We established genetic diagnoses in 13 of 60 previously unsolved cases using confirmatory experiments, including cDNA complementation to show that mutations in NUBPL and FOXRED1 can cause complex I deficiency. Our study illustrates how large-scale sequencing, coupled with functional prediction and experimental validation, can be used to identify causal mutations in individual cases. Complex I of the mitochondrial respiratory chain is a large ~1-MDa ­assembly factors are probably required, as suggested by the 20 factors macromolecular machine composed of 45 protein subunits encoded necessary for assembly of the smaller complex IV9 and by cohort by both the nuclear and mitochondrial (mtDNA) genomes.
    [Show full text]
  • Mutation of the Fumarase Gene in Two Siblings with Progressive Encephalopathy and Fumarase Deficiency T
    Mutation of the Fumarase Gene in Two Siblings with Progressive Encephalopathy and Fumarase Deficiency T. Bourgeron,* D. Chretien,* J. Poggi-Bach, S. Doonan,' D. Rabier,* P. Letouze,I A. Munnich,* A. R6tig,* P. Landneu,* and P. Rustin* *Unite de Recherches sur les Handicaps Genetiques de l'Enfant, INSERM U393, Departement de Pediatrie et Departement de Biochimie, H6pital des Enfants-Malades, 149, rue de Sevres, 75743 Paris Cedex 15, France; tDepartement de Pediatrie, Service de Neurologie et Laboratoire de Biochimie, Hopital du Kremlin-Bicetre, France; IFaculty ofScience, University ofEast-London, UK; and IService de Pediatrie, Hopital de Dreux, France Abstract chondrial enzyme (7). Human tissue fumarase is almost We report an inborn error of the tricarboxylic acid cycle, fu- equally distributed between the mitochondria, where the en- marase deficiency, in two siblings born to first cousin parents. zyme catalyzes the reversible hydration of fumarate to malate They presented with progressive encephalopathy, dystonia, as a part ofthe tricarboxylic acid cycle, and the cytosol, where it leucopenia, and neutropenia. Elevation oflactate in the cerebro- is involved in the metabolism of the fumarate released by the spinal fluid and high fumarate excretion in the urine led us to urea cycle. The two isoenzymes have quite homologous struc- investigate the activities of the respiratory chain and of the tures. In rat liver, they differ only by the acetylation of the Krebs cycle, and to finally identify fumarase deficiency in these NH2-terminal amino acid of the cytosolic form (8). In all spe- two children. The deficiency was profound and present in all cies investigated so far, the two isoenzymes have been found to tissues investigated, affecting the cytosolic and the mitochon- be encoded by a single gene (9,10).
    [Show full text]
  • Selectin Ligand Sialyl-Lewis X Antigen Drives Metastasis of Hormone-Dependent Breast Cancers
    Published OnlineFirst October 24, 2011; DOI: 10.1158/0008-5472.CAN-11-1139 Cancer Tumor and Stem Cell Biology Research Selectin Ligand Sialyl-Lewis x Antigen Drives Metastasis of Hormone-Dependent Breast Cancers Sylvain Julien1, Aleksandar Ivetic2, Anita Grigoriadis3, Ding QiZe1, Brian Burford1, Daisy Sproviero1, Gianfranco Picco1, Cheryl Gillett4, Suzanne L. Papp5, Lana Schaffer5, Andrew Tutt3, Joyce Taylor-Papadimitriou1, Sarah E. Pinder4, and Joy M. Burchell1 Abstract The glycome acts as an essential interface between cells and the surrounding microenvironment. However, changes in glycosylation occur in nearly all breast cancers, which can alter this interaction. Here, we report that profiles of glycosylation vary between ER-positive and ER-negative breast cancers. We found that genes involved in the synthesis of sialyl-Lewis x (sLex; FUT3, FUT4, and ST3GAL6) are significantly increased in estrogen receptor alpha-negative (ER-negative) tumors compared with ER-positive ones. SLex expression had no influence on the survival of patients whether they had ER-negative or ER-positive tumors. However, high expression of sLex in ER- positive tumors was correlated with metastasis to the bone where sLex receptor E-selectin is constitutively expressed. The ER-positive ZR-75-1 and the ER-negative BT20 cell lines both express sLex but only ZR-75-1 cells could adhere to activated endothelial cells under dynamic flow conditions in a sLex and E-selectin–dependent manner. Moreover, L/P-selectins bound strongly to ER-negative MDA-MB-231 and BT-20 cell lines in a heparan sulfate (HS)–dependent manner that was independent of sLex expression. Expression of glycosylation genes involved in heparan biosynthesis (EXT1 and HS3ST1) was increased in ER-negative tumors.
    [Show full text]
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • In Vivo Dual RNA-Seq Analysis Reveals the Basis for Differential Tissue Tropism of Clinical Isolates of Streptococcus Pneumoniae
    In Vivo Dual RNA-Seq Analysis Reveals the Basis for Differential Tissue Tropism of Clinical Isolates of Streptococcus pneumoniae Vikrant Minhas,1,4 Rieza Aprianto,2,4 Lauren J. McAllister,1 Hui Wang,1 Shannon C. David,1 Kimberley T. McLean,1 Iain Comerford,3 Shaun R. McColl,3 James C. Paton,1,5,6,* Jan-Willem Veening,2,5 and Claudia Trappetti,1,5 Supplementary Information Supplementary Table 1. Pneumococcal differential gene expression in the lungs 6 h post-infection, 9-47-Ear vs 9-47M. Genes with fold change (FC) greater than 2 and p < 0.05 are shown. FC values highlighted in blue = upregulated in 9-47-Ear, while values highlighted in red = upregulated in 9- 47M. Locus tag in 9-47- Product padj FC Ear Sp947_chr_00844 Sialidase B 3.08E-10 313.9807 Sp947_chr_02077 hypothetical protein 4.46E-10 306.9412 Sp947_chr_00842 Sodium/glucose cotransporter 2.22E-09 243.4822 Sp947_chr_00841 N-acetylneuraminate lyase 4.53E-09 227.7963 scyllo-inositol 2-dehydrogenase Sp947_chr_00845 (NAD(+)) 4.36E-09 221.051 Sp947_chr_00848 hypothetical protein 1.19E-08 202.7867 V-type sodium ATPase catalytic subunit Sp947_chr_00853 A 1.29E-06 100.5411 Sp947_chr_00846 Beta-glucoside kinase 3.42E-06 98.18951 Sp947_chr_00855 V-type sodium ATPase subunit D 8.34E-06 85.94879 Sp947_chr_00851 V-type sodium ATPase subunit C 2.50E-05 72.46612 Sp947_chr_00843 hypothetical protein 2.17E-05 65.97758 Sp947_chr_00839 HTH-type transcriptional regulator RpiR 3.09E-05 61.28171 Sp947_chr_00854 V-type sodium ATPase subunit B 1.32E-06 50.86992 Sp947_chr_00120 hypothetical protein 3.00E-04
    [Show full text]
  • Integrative Pathway Analysis of Metabolic Signature in Bladder Cancer: a Linkage to the Cancer Genome Atlas Project and Prediction of Survival
    Integrative Pathway Analysis of Metabolic Signature in Bladder Cancer: A Linkage to The Cancer Genome Atlas Project and Prediction of Survival Friedrich-Carl von Rundstedt,* Kimal Rajapakshe,* Jing Ma, James M. Arnold, Jie Gohlke, Vasanta Putluri, Rashmi Krishnapuram, D. Badrajee Piyarathna, Yair Lotan, Daniel Godde,€ Stephan Roth, Stephan Storkel,€ Jonathan M. Levitt, George Michailidis, Arun Sreekumar, Seth P. Lerner, Cristian Coarfa† and Nagireddy Putluri† From the Scott Department of Urology (FCvR, JML, SPL), Department of Molecular and Cell Biology, Alkek Center for Molecular Discovery (KR, JMA, JG, RK, DBP, AS, CC, NP), Verna and Marrs McLean Department of Biochemistry (AS), Advanced Technology Core (VP, DBP, AS, NP) and Department of Pathology and Immunology (JML), Baylor College of Medicine, Houston and Department of Urology, University of Texas Southwestern Medical Center (YL), Dallas, Texas, Departments of Urology (FCvR, SR) and Pathology Helios Klinikum (DG, SS), Witten-Herdecke University, Wuppertal, Germany, and Department of Statistics, University of Michigan (JM, GM), Ann Arbor, Michigan Purpose: We used targeted mass spectrometry to study the metabolic fingerprint of urothelial cancer and determine whether the biochemical pathway analysis Abbreviations and Acronyms gene signature would have a predictive value in independent cohorts of patients ¼ with bladder cancer. BCa bladder cancer Materials and Methods: Pathologically evaluated, bladder derived tissues, including benign adjacent tissue from 14 patients and bladder cancer from 46, were analyzed by liquid chromatography based targeted mass spectrometry. Differen- tial metabolites associated with tumor samples in comparison to benign tissue were identified by adjusting the p values for multiple testing at a false discovery rate threshold of 15%.
    [Show full text]
  • In Vitro Treatment of Hepg2 Cells with Saturated Fatty Acids Reproduces
    © 2015. Published by The Company of Biologists Ltd | Disease Models & Mechanisms (2015) 8, 183-191 doi:10.1242/dmm.018234 RESEARCH ARTICLE In vitro treatment of HepG2 cells with saturated fatty acids reproduces mitochondrial dysfunction found in nonalcoholic steatohepatitis Inmaculada García-Ruiz1,*, Pablo Solís-Muñoz2, Daniel Fernández-Moreira3, Teresa Muñoz-Yagüe1 and José A. Solís-Herruzo1 ABSTRACT INTRODUCTION Activity of the oxidative phosphorylation system (OXPHOS) is Nonalcoholic fatty liver disease (NAFLD) represents a spectrum of decreased in humans and mice with nonalcoholic steatohepatitis. liver diseases extending from pure fatty liver through nonalcoholic Nitro-oxidative stress seems to be involved in its pathogenesis. The steatohepatitis (NASH) to cirrhosis and hepatocarcinoma that occurs aim of this study was to determine whether fatty acids are implicated in individuals who do not consume a significant amount of alcohol in the pathogenesis of this mitochondrial defect. In HepG2 cells, we (Matteoni et al., 1999). Although the pathogenesis of NAFLD analyzed the effect of saturated (palmitic and stearic acids) and remains undefined, the so-called ‘two hits’ model of pathogenesis monounsaturated (oleic acid) fatty acids on: OXPHOS activity; levels has been proposed (Day and James, 1998). Whereas the ‘first hit’ of protein expression of OXPHOS complexes and their subunits; gene involves the accumulation of fat in the liver, the ‘second hit’ expression and half-life of OXPHOS complexes; nitro-oxidative stress; includes oxidative stress resulting in inflammation, stellate cell and NADPH oxidase gene expression and activity. We also studied the activation, fibrogenesis and progression of NAFLD to NASH effects of inhibiting or silencing NADPH oxidase on the palmitic-acid- (Chitturi and Farrell, 2001).
    [Show full text]
  • Proteomic and Metabolomic Analyses of Mitochondrial Complex I-Deficient
    THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 287, NO. 24, pp. 20652–20663, June 8, 2012 © 2012 by The American Society for Biochemistry and Molecular Biology, Inc. Published in the U.S.A. Proteomic and Metabolomic Analyses of Mitochondrial Complex I-deficient Mouse Model Generated by Spontaneous B2 Short Interspersed Nuclear Element (SINE) Insertion into NADH Dehydrogenase (Ubiquinone) Fe-S Protein 4 (Ndufs4) Gene*□S Received for publication, November 25, 2011, and in revised form, April 5, 2012 Published, JBC Papers in Press, April 25, 2012, DOI 10.1074/jbc.M111.327601 Dillon W. Leong,a1 Jasper C. Komen,b1 Chelsee A. Hewitt,a Estelle Arnaud,c Matthew McKenzie,d Belinda Phipson,e Melanie Bahlo,e,f Adrienne Laskowski,b Sarah A. Kinkel,a,g,h Gayle M. Davey,g William R. Heath,g Anne K. Voss,a,h René P. Zahedi,i James J. Pitt,j Roman Chrast,c Albert Sickmann,i,k Michael T. Ryan,l Gordon K. Smyth,e,f,h b2 a,h,m,n3 David R. Thorburn, and Hamish S. Scott Downloaded from From the aMolecular Medicine Division, gImmunology Division, and eBioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, Australia, the bMurdoch Childrens Research Institute, Royal Children’s Hospital and Department of Paediatrics, University of Melbourne, Parkville, Victoria 3052, Australia, the cDépartement de Génétique Médicale, Université de Lausanne, 1005 Lausanne, Switzerland, the dCentre for Reproduction and Development, Monash Institute of Medical Research, Clayton, Victoria 3168, Australia, the hDepartment of Medical Biology
    [Show full text]