Short-Term Euxinia Coinciding with Rotaliporid Extinctions During the Cenomanian-Turonian Transition in the Middle-Neritic Easte
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The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
33. Cretaceous and Paleogene Planktonic Foraminifera, Leg 27 of the Deep Sea Drilling Project V
33. CRETACEOUS AND PALEOGENE PLANKTONIC FORAMINIFERA, LEG 27 OF THE DEEP SEA DRILLING PROJECT V. A. Krasheninnikov, Geological Institute of the Academy of Sciences, Moscow, USSR ABSTRACT Cretaceous and Cenozoic sediments, penetrated by Sites 259, 260, 261, and 263 in the eastern part of the Indian Ocean, are mainly brown zeolite clays and turbidites. Small quantities of calcareous clays and nanno ooze with planktonic foraminifera are intercalated with the clays and have Albian, upper Paleocene, and lower Eocene ages. The Albian sediments at Site 259 are characterized only by Hedbergella species (infracretacea, globigerinellinoides, planispira, amabilis, aff. delrioensis, aff. infracretacea). At Site 260 planktonic foraminifera are more diverse; in addition to the above-mentioned species there are other species of Hedbergella (trocoidea brittonensis) and representatives of Globigerinelloides (eaglefordensis, bentonensis, ultramicra, gyroidinaeformis, aff. maridalensis). Assemblages of planktonic foraminifera of the upper Paleocene (the Globorotalia velascoensis Zone) at Site 259 consist of comparatively rare species of Acarinina (acarinata, mckannai, primitival and Glpbigerina (chascanona, nana) combined with sporadic Globorotalia (imitata, aff. acuta). Sediments of the lower part of the lower Eocene at Site 259 are characterized by rare Acarinina (pseudotopilensis, soldadoensis, acarinata, aff. triplex) and casts of Globorotalia from the group of Globorotalia aequa— G. subbotinae—G. marginodentata. Turbidites contain rather frequently redeposited Cretaceous, Paleogene, and Neogene planktonic foraminifera. LOWER CRETACEOUS (ALBIAN) Lower Cretaceous sediments, Albian, with planktonic _____^^ ""W••l•i i•i•r;•i•: foraminifera have been identified in two regions of the Indian Ocean—the Perth Abyssal Plain in the south (Site 259) and the Gascoyne Abyssal Plain in the north (Site 260). -
Geochemical Characteristics of Late Ordovician Shales in the Upper Yangtze Platform, South China: Implications for Redox Environmental Evolution
minerals Article Geochemical Characteristics of Late Ordovician Shales in the Upper Yangtze Platform, South China: Implications for Redox Environmental Evolution Donglin Lin 1,2,3, Shuheng Tang 1,2,3,*, Zhaodong Xi 1,2,3, Bing Zhang 1,2,3 and Yapei Ye 1,2,3 1 School of Energy Resource, China University of Geosciences, Beijing 100083, China; [email protected] (D.L.); [email protected] (Z.X.); [email protected] (B.Z.); [email protected] (Y.Y.) 2 Key Laboratory of Marine Reservoir Evolution and Hydrocarbon Enrichment Mechanism, Ministry of Education, Beijing 100083, China 3 Key Laboratory of Strategy Evaluation for Shale Gas, Ministry of Land and Resources, Beijing 100083, China * Correspondence: [email protected]; Tel.: +86-134-8882-1576 Abstract: Changes to the redox environment of seawater in the Late Ordovician affect the process of organic matter enrichment and biological evolution. However, the evolution of redox and its underlying causes remain unclear. This paper analyzed the vertical variability of main, trace elements and δ34Spy from a drill core section (well ZY5) in the Upper Yangtze Platform, and described the redox conditions, paleoproductivity and paleoclimate variability recorded in shale deposits of the P. pacificus zone and M. extraordinarius zone that accumulated during Wufeng Formation. The results showed that shale from well ZY5 in Late Ordovician was deposited under oxidized water environment, and Citation: Lin, D.; Tang, S.; Xi, Z.; Zhang, B.; Ye, Y. Geochemical there are more strongly reducing bottom water conditions of the M. extraordinarius zone compared Characteristics of Late Ordovician with the P. -
Protozoa and Oxygen
Acta Protozool. (2014) 53: 3–12 http://www.eko.uj.edu.pl/ap ActA doi:10.4467/16890027AP.13.0020.1117 Protozoologica Special issue: Marine Heterotrophic Protists Guest editors: John R. Dolan and David J. S. Montagnes Review paper Protozoa and Oxygen Tom FENCHEL Marine Biological Laboratory, University of Copenhagen, Denmark Abstract. Aerobic protozoa can maintain fully aerobic metabolic rates even at very low O2-tensions; this is related to their small sizes. Many – or perhaps all – protozoa show particular preferences for a given range of O2-tensions. The reasons for this and the role for their distribution in nature are discussed and examples of protozoan biota in O2-gradients in aquatic systems are presented. Facultative anaerobes capable of both aerobic and anaerobic growth are probably common within several protozoan taxa. It is concluded that further progress in this area is contingent on physiological studies of phenotypes. Key words: Protozoa, chemosensory behavior, oxygen, oxygen toxicity, microaerobic protozoa, facultative anaerobes, microaerobic and anaerobic habitats. INTRODUCTION low molecular weight organics and in some cases H2 as metabolic end products. Some ciliates and foraminifera use nitrate as a terminal electron acceptor in a respira- Increasing evidence suggests that the last common tory process (for a review on anaerobic protozoa, see ancestor of extant eukaryotes was mitochondriate and Fenchel 2011). had an aerobic energy metabolism. While representa- The great majority of protozoan species, however, tives of different protist taxa have secondarily adapted depend on aerobic energy metabolism. Among pro- to an anaerobic life style, all known protists possess ei- tists with an aerobic metabolism many – or perhaps ther mitochondria capable of oxidative phosphorylation all – show preferences for particular levels of oxygen or – in anaerobic species – have modified mitochon- tension below atmospheric saturation. -
Jocelyn A. Sessa
Jocelyn A. Sessa Current: Assistant Curator of Invertebrate Paleontology, Academy of Natural Sciences, & Assistant Professor, Department of Biodiversity, Earth & Environmental Science of Drexel University. Past Positions: 2016 to 2017 Senior Scientist in Paleontology & Education, American Museum of Natural History. Postdoctoral Fellowships: 2012 to 2016 Departments of Paleontology & Education, American Museum of Natural History. 2010 to 2012 Department of Paleobiology, Smithsonian National Museum of Natural History. 2009 to 2010 Department of Earth Sciences, Syracuse University. Education: Ph.D., 2009 Department of Geosciences, Pennsylvania State University, University Park, PA. M.S., 2003 Department of Geology, University of Cincinnati, Cincinnati, Ohio. B.A., 2000 Department of Geological Sciences, State University of New York at Geneseo, Geneseo, NY. Cum laude, minor in Environmental Studies. Publications (* indicates student author; for student work, ‡ indicates corresponding author): Buczek, A.J.*, Hendy, A., Hopkins, M. Sessa, J.A.‡ 2020. On the reconciliation of biostratigraphy and strontium isotope stratigraphy of three southern Californian Plio-Pleistocene formations. Geological Society of America Bulletin 132 ; doi.org/10.1130/B35488.1. Oakes, R.L., Sessa, J.A. 2020. Determining how biotic and abiotic variables affect the shell condition and parameters of Heliconoides inflatus pteropods from a sediment trap in the Cariaco Basin. Biogeosciences 17:1975–1990; doi.org/10.5194/bg-17-1975-2020. Oakes, R.L., Hill Chase, M., Siddall, M.E., Sessa, J.A. 2020. Testing the impact of two key scan parameters on the quality and repeatability of measurements from CT scan data. Palaeontologia Electronica 23(1):a07; doi.org/10.26879/942. Ferguson, K.*, MacLeod, K.G.‡, Landman, N.H., Sessa, J.A.‡ 2019. -
DOGAMI Open-File Report O-86-06, the State of Scientific
"ABLE OF CONTENTS Page INTRODUCTION ..~**********..~...~*~~.~...~~~~1 GORDA RIDGE LEASE AREA ....................... 2 RELATED STUDIES IN THE NORTH PACIFIC .+,...,. 5 BYDROTHERMAL TEXTS ........................... 9 34T.4 GAPS ................................... r6 ACKNOWLEDGEMENT ............................. I8 APPENDIX 1. Species found on the Gorda Ridge or within the lease area . .. .. .. .. .. 36 RPPENDiX 2. Species found outside the lease area that may occur in the Gorda Ridge Lease area, including hydrothermal vent organisms .................................55 BENTHOS THE STATE OF SCIENTIFIC INFORMATION RELATING TO THE BIOLOGY AND ECOLOGY 3F THE GOUDA RIDGE STUDY AREA, NORTZEAST PACIFIC OCEAN: INTRODUCTION Presently, only two published studies discuss the ecology of benthic animals on the Gorda Sidge. Fowler and Kulm (19701, in a predominantly geolgg isal study, used the presence of sublittor31 and planktsnic foraminiferans as an indication of uplift of tfie deep-sea fioor. Their resuits showed tiac sedinenta ana foraminiferans are depositea in the Zscanaba Trough, in the southern part of the Corda Ridge, by turbidity currents with a continental origin. They list 22 species of fararniniferans from the Gorda Rise (See Appendix 13. A more recent study collected geophysical, geological, and biological data from the Gorda Ridge, with particular emphasis on the northern part of the Ridge (Clague et al. 19843. Geological data suggest the presence of widespread low-temperature hydrothermal activity along the axf s of the northern two-thirds of the Corda 3idge. However, the relative age of these vents, their present activity and presence of sulfide deposits are currently unknown. The biological data, again with an emphasis on foraminiferans, indicate relatively high species diversity and high density , perhaps assoc iated with widespread hydrotheraal activity. -
Mechanics Unlocks the Morphogenetic Puzzle of Interlocking Bivalved Shells
Mechanics unlocks the morphogenetic puzzle of interlocking bivalved shells Derek E. Moultona,1 , Alain Gorielya , and Regis´ Chiratb aMathematical Institute, University of Oxford, Oxford, OX2 6GG, United Kingdom; and bCNRS 5276, LGL-TPE (Le Laboratoire de Geologie´ de Lyon: Terre, Planetes,` Environnement), Universite´ Lyon 1, 69622 Villeurbanne Cedex, France Edited by Sean H. Rice, Texas Tech University, Lubbock, TX, and accepted by Editorial Board Member David Jablonski November 11, 2019 (received for review September 24, 2019) Brachiopods and mollusks are 2 shell-bearing phyla that diverged tal events causing shell injuries. Yet, in all cases the interlocking from a common shell-less ancestor more than 540 million years ago. of the 2 shell edges is tightly maintained. These observations Brachiopods and bivalve mollusks have also convergently evolved imply that the interlocking pattern emerges as the result of epi- a bivalved shell that displays an apparently mundane, yet strik- genetic interactions modulating the behavior of the secreting ing feature from a developmental point of view: When the shell mantle during shell development. is closed, the 2 valve edges meet each other in a commissure that Here, we provide a geometric and mechanical explanation forms a continuum with no gaps or overlaps despite the fact that for this morphological trait based on a detailed analysis of the each valve, secreted by 2 mantle lobes, may present antisymmet- shell geometry during growth and the physical interaction of the ric ornamental patterns of varying regularity and size. Interlock- shell-secreting soft mantle with both the rigid shell edge and ing is maintained throughout the entirety of development, even the opposing mantle lobe. -
The Foraminifera.Eu Database: Concept and Status
Palaeontologia Electronica palaeo-electronica.org The foraminifera.eu database: concept and status Michael Hesemann ABSTRACT The foraminifera.eu project with its 120 avocational and professional scientific contributors has built a popular online image database containing information about fossil and recent foraminifera. Foraminiferal data available from over 200 years of sci- entific studies and publications were first analyzed in order to create a robust database using structurable and available data-attributes. A freely accessible database with online interfaces was established to improve the accessibility of foraminiferal data. So far, the database contains 9,800+ records of specimens with images and accompany- ing metadata. Thirty data attributes were chosen, and discrete values were defined and applied to each dataset covering the areas of identification, geographical and strati- graphical positioning, morphology, synonyms, references, and collection related data. The attributes were chosen based on their usefulness to both avocational and profes- sional scientists and on their general availability. A discussion and review process has been established to enlarge the database by adding more records and to implement new data attributes and interfaces. In 2015, the database was accessed on average by 220 users daily (excluding bots) and 0,8 gigabytes of data were downloaded each day. The numbers indicate the utility and relevance of the foraminifera.eu database, and this is also acknowledged by senior scientists and major institutions through their con- tributions. Michael Hesemann. Foraminifera.eu Project, Waterloostrasse 24, 22769 Hamburg, Germany. [email protected] INTRODUCTION Messina, 1940-2014; Kennett and Srinivasan, 1983; Loeblich and Tappan, 1988). The basic idea Over 200 years of scientific studies and thou- of the foraminifera.eu database (FEUDAT) is to sands of publications have resulted in a huge improve the accessibility of foraminiferal data. -
The Marine Protist Foraminifera
International Journal of Paleobiology & Paleontology ISSN: 2642-1283 MEDWIN PUBLISHERS Committed to Create Value for researchers The Marine Protist Foraminifera Ishita D* Editorial Department of Geology, University of Calcutta, Kolkata, India Volume 3 Issue 1 Received Date: March 21, 2020 *Corresponding author: Ishita Das, Department of Geology, University of Calcutta, Kolkata, Published Date: June 02, 2020 India, Email: [email protected] The marine protist foraminifera have become a very of a revolution in the investigation of trace elements in important tool in palaeoenvironmental analysis. Foraminifera Foraminifera, and knowledge in this area is increasing rapidly. are organisms belonging to a class of amoeboid protists Culturing of live individuals has also played an important role that are characterized by streaming granular ectoplasm in this proxy development, because the potential usefulness for catching prey and they are commonly protected by an external shell. The external shell can be made up of varied Oceanographers broadly group elemental behaviour in the material although the most common material is calcium oceanof trace according elements to can the be biogeochemical verified directly cycling by experimentation. of the elements carbonate. Some species have an agglutinated test where in the ocean: [1] ‘nutrient’ proxies such as Cd, Ba and Zn the organism constructs its test or shell from the sediment which provide information on seawater nutrient, carbon and particles surrounding it. Foraminifera usually have two types carbonate levels. They show large and systematic variations of life habits – benthic or planktic. The benthic foraminifera in their seawater chemistry due to their involvement in may adapt to live on sediment-water interface (epifaunal) biological cycling; [2] ‘physical’ proxies such as Mg, Sr, F and or in the sediment at various depths (infaunal). -
Microbial Diversity Under Extreme Euxinia: Mahoney Lake, Canada V
Geobiology (2012), 10, 223–235 DOI: 10.1111/j.1472-4669.2012.00317.x Microbial diversity under extreme euxinia: Mahoney Lake, Canada V. KLEPAC-CERAJ,1,2 C. A. HAYES,3 W. P. GILHOOLY,4 T. W. LYONS,5 R. KOLTER2 AND A. PEARSON3 1Department of Molecular Genetics, Forsyth Institute, Cambridge, MA, USA 2Department of Microbiology and Molecular Genetics, Harvard Medical School, Boston, MA, USA 3Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA, USA 4Department of Earth and Planetary Sciences, Washington University, Saint Louis, MO, USA 5Department of Earth Sciences, University of California, Riverside, CA, USA ABSTRACT Mahoney Lake, British Columbia, Canada, is a stratified, 15-m deep saline lake with a euxinic (anoxic, sulfidic) hypolimnion. A dense plate of phototrophic purple sulfur bacteria is found at the chemocline, but to date the rest of the Mahoney Lake microbial ecosystem has been underexamined. In particular, the microbial community that resides in the aphotic hypolimnion and ⁄ or in the lake sediments is unknown, and it is unclear whether the sulfate reducers that supply sulfide for phototrophy live only within, or also below, the plate. Here we profiled distribu- tions of 16S rRNA genes using gene clone libraries and PhyloChip microarrays. Both approaches suggest that microbial diversity is greatest in the hypolimnion (8 m) and sediments. Diversity is lowest in the photosynthetic plate (7 m). Shallower depths (5 m, 7 m) are rich in Actinobacteria, Alphaproteobacteria, and Gammaproteo- bacteria, while deeper depths (8 m, sediments) are rich in Crenarchaeota, Natronoanaerobium, and Verrucomi- crobia. The heterogeneous distribution of Deltaproteobacteria and Epsilonproteobacteria between 7 and 8 m is consistent with metabolisms involving sulfur intermediates in the chemocline, but complete sulfate reduction in the hypolimnion. -
A Guide to 1.000 Foraminifera from Southwestern Pacific New Caledonia
Jean-Pierre Debenay A Guide to 1,000 Foraminifera from Southwestern Pacific New Caledonia PUBLICATIONS SCIENTIFIQUES DU MUSÉUM Debenay-1 7/01/13 12:12 Page 1 A Guide to 1,000 Foraminifera from Southwestern Pacific: New Caledonia Debenay-1 7/01/13 12:12 Page 2 Debenay-1 7/01/13 12:12 Page 3 A Guide to 1,000 Foraminifera from Southwestern Pacific: New Caledonia Jean-Pierre Debenay IRD Éditions Institut de recherche pour le développement Marseille Publications Scientifiques du Muséum Muséum national d’Histoire naturelle Paris 2012 Debenay-1 11/01/13 18:14 Page 4 Photos de couverture / Cover photographs p. 1 – © J.-P. Debenay : les foraminifères : une biodiversité aux formes spectaculaires / Foraminifera: a high biodiversity with a spectacular variety of forms p. 4 – © IRD/P. Laboute : îlôt Gi en Nouvelle-Calédonie / Island Gi in New Caledonia Sauf mention particulière, les photos de cet ouvrage sont de l'auteur / Except particular mention, the photos of this book are of the author Préparation éditoriale / Copy-editing Yolande Cavallazzi Maquette intérieure et mise en page / Design and page layout Aline Lugand – Gris Souris Maquette de couverture / Cover design Michelle Saint-Léger Coordination, fabrication / Production coordination Catherine Plasse La loi du 1er juillet 1992 (code de la propriété intellectuelle, première partie) n'autorisant, aux termes des alinéas 2 et 3 de l'article L. 122-5, d'une part, que les « copies ou reproductions strictement réservées à l'usage privé du copiste et non destinées à une utilisation collective » et, d'autre part, que les analyses et les courtes citations dans un but d'exemple et d'illustration, « toute représentation ou reproduction intégrale ou partielle, faite sans le consentement de l'auteur ou de ses ayants droit ou ayants cause, est illicite » (alinéa 1er de l'article L. -
Phylogenomics Supports the Monophyly of the Cercozoa T ⁎ Nicholas A.T
Molecular Phylogenetics and Evolution 130 (2019) 416–423 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenomics supports the monophyly of the Cercozoa T ⁎ Nicholas A.T. Irwina, , Denis V. Tikhonenkova,b, Elisabeth Hehenbergera,1, Alexander P. Mylnikovb, Fabien Burkia,2, Patrick J. Keelinga a Department of Botany, University of British Columbia, Vancouver V6T 1Z4, British Columbia, Canada b Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok 152742, Russia ARTICLE INFO ABSTRACT Keywords: The phylum Cercozoa consists of a diverse assemblage of amoeboid and flagellated protists that forms a major Cercozoa component of the supergroup, Rhizaria. However, despite its size and ubiquity, the phylogeny of the Cercozoa Rhizaria remains unclear as morphological variability between cercozoan species and ambiguity in molecular analyses, Phylogeny including phylogenomic approaches, have produced ambiguous results and raised doubts about the monophyly Phylogenomics of the group. Here we sought to resolve these ambiguities using a 161-gene phylogenetic dataset with data from Single-cell transcriptomics newly available genomes and deeply sequenced transcriptomes, including three new transcriptomes from Aurigamonas solis, Abollifer prolabens, and a novel species, Lapot gusevi n. gen. n. sp. Our phylogenomic analysis strongly supported a monophyletic Cercozoa, and approximately-unbiased tests rejected the paraphyletic topologies observed in previous studies. The transcriptome of L. gusevi represents the first transcriptomic data from the large and recently characterized Aquavolonidae-Treumulida-'Novel Clade 12′ group, and phyloge- nomics supported its position as sister to the cercozoan subphylum, Endomyxa. These results provide insights into the phylogeny of the Cercozoa and the Rhizaria as a whole.