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Molecular Phylogeny of Ustilago and Sporisorium Species (Basidiomycota, Ustilaginales) Based on Internal Transcribed Spacer (ITS) Sequences1
Color profile: Disabled Composite Default screen 976 Molecular phylogeny of Ustilago and Sporisorium species (Basidiomycota, Ustilaginales) based on internal transcribed spacer (ITS) sequences1 Matthias Stoll, Meike Piepenbring, Dominik Begerow, Franz Oberwinkler Abstract: DNA sequence data from the internal transcribed spacer (ITS) region of the nuclear rDNA genes were used to determine a phylogenetic relationship between the graminicolous smut genera Ustilago and Sporisorium (Ustilaginales). Fifty-three members of both genera were analysed together with three related outgroup genera. Neighbor-joining and Bayesian inferences of phylogeny indicate the monophyly of a bipartite genus Sporisorium and the monophyly of a core Ustilago clade. Both methods confirm the recently published nomenclatural change of the cane smut Ustilago scitaminea to Sporisorium scitamineum and indicate a putative connection between Ustilago maydis and Sporisorium. Overall, the three clades resolved in our analyses are only weakly supported by morphological char- acters. Still, their preferences to parasitize certain subfamilies of Poaceae could be used to corroborate our results: all members of both Sporisorium groups occur exclusively on the grass subfamily Panicoideae. The core Ustilago group mainly infects the subfamilies Pooideae or Chloridoideae. Key words: basidiomycete systematics, ITS, molecular phylogeny, Bayesian analysis, Ustilaginomycetes, smut fungi. Résumé : Afin de déterminer la relation phylogénétique des genres Ustilago et Sporisorium (Ustilaginales), responsa- bles du charbon chez les graminées, les auteurs ont utilisé les données de séquence de la région espaceur transcrit interne (ITS) des gènes nucléiques ADNr. Ils ont analysé 53 membres de ces genres, ainsi que trois genres apparentés. Les liens avec les voisins et l’inférence bayésienne de la phylogénie indiquent la monophylie d’un genre Sporisorium bipartite et la monophylie d’un clade Ustilago central. -
<I>Ustilago-Sporisorium-Macalpinomyces</I>
Persoonia 29, 2012: 55–62 www.ingentaconnect.com/content/nhn/pimj REVIEW ARTICLE http://dx.doi.org/10.3767/003158512X660283 A review of the Ustilago-Sporisorium-Macalpinomyces complex A.R. McTaggart1,2,3,5, R.G. Shivas1,2, A.D.W. Geering1,2,5, K. Vánky4, T. Scharaschkin1,3 Key words Abstract The fungal genera Ustilago, Sporisorium and Macalpinomyces represent an unresolved complex. Taxa within the complex often possess characters that occur in more than one genus, creating uncertainty for species smut fungi placement. Previous studies have indicated that the genera cannot be separated based on morphology alone. systematics Here we chronologically review the history of the Ustilago-Sporisorium-Macalpinomyces complex, argue for its Ustilaginaceae resolution and suggest methods to accomplish a stable taxonomy. A combined molecular and morphological ap- proach is required to identify synapomorphic characters that underpin a new classification. Ustilago, Sporisorium and Macalpinomyces require explicit re-description and new genera, based on monophyletic groups, are needed to accommodate taxa that no longer fit the emended descriptions. A resolved classification will end the taxonomic confusion that surrounds generic placement of these smut fungi. Article info Received: 18 May 2012; Accepted: 3 October 2012; Published: 27 November 2012. INTRODUCTION TAXONOMIC HISTORY Three genera of smut fungi (Ustilaginomycotina), Ustilago, Ustilago Spo ri sorium and Macalpinomyces, contain about 540 described Ustilago, derived from the Latin ustilare (to burn), was named species (Vánky 2011b). These three genera belong to the by Persoon (1801) for the blackened appearance of the inflores- family Ustilaginaceae, which mostly infect grasses (Begerow cence in infected plants, as seen in the type species U. -
Comparative Analysis of the Maize Smut Fungi Ustilago Maydis and Sporisorium Reilianum
Comparative Analysis of the Maize Smut Fungi Ustilago maydis and Sporisorium reilianum Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) dem Fachbereich Biologie der Philipps-Universität Marburg vorgelegt von Bernadette Heinze aus Johannesburg Marburg / Lahn 2009 Vom Fachbereich Biologie der Philipps-Universität Marburg als Dissertation angenommen am: Erstgutachterin: Prof. Dr. Regine Kahmann Zweitgutachter: Prof. Dr. Michael Bölker Tag der mündlichen Prüfung: Die Untersuchungen zur vorliegenden Arbeit wurden von März 2003 bis April 2007 am Max-Planck-Institut für Terrestrische Mikrobiologie in der Abteilung Organismische Interaktionen unter Betreuung von Dr. Jan Schirawski durchgeführt. Teile dieser Arbeit sind veröffentlicht in : Schirawski J, Heinze B, Wagenknecht M, Kahmann R . 2005. Mating type loci of Sporisorium reilianum : Novel pattern with three a and multiple b specificities. Eukaryotic Cell 4:1317-27 Reinecke G, Heinze B, Schirawski J, Büttner H, Kahmann R and Basse C . 2008. Indole-3-acetic acid (IAA) biosynthesis in the smut fungus Ustilago maydis and its relevance for increased IAA levels in infected tissue and host tumour formation. Molecular Plant Pathology 9(3): 339-355. Erklärung Erklärung Ich versichere, dass ich meine Dissertation mit dem Titel ”Comparative analysis of the maize smut fungi Ustilago maydis and Sporisorium reilianum “ selbständig, ohne unerlaubte Hilfe angefertigt und mich dabei keiner anderen als der von mir ausdrücklich bezeichneten Quellen und Hilfen bedient habe. Diese Dissertation wurde in der jetzigen oder einer ähnlichen Form noch bei keiner anderen Hochschule eingereicht und hat noch keinen sonstigen Prüfungszwecken gedient. Ort, Datum Bernadette Heinze In memory of my fathers Jerry Goodman and Christian Heinze. “Every day I remind myself that my inner and outer life are based on the labors of other men, living and dead, and that I must exert myself in order to give in the same measure as I have received and am still receiving. -
Effects of Loose Kernel Smut Caused by Sporisorium Cruentum Onrhizomes
Journal of Plant Protection Research ISSN 1427-4337 ORIGINAL ARTICLE Eff ects of loose kernel smut caused by Sporisorium cruentum onrhizomes of Sorghum halepense Marta Monica Astiz Gassó1*, Marcelo Lovisolo2, Analia Perelló3 1 Santa Catalina Phytotechnical Institute, Faculty of Agricultural and Forestry Sciences UNLP Calle 60 y 119 (1900) La Plata, Buenos Aires, Argentina 2 Morphologic Botany, Faculty of Agricultural Sciences – National University Lomas de Zamora. Ruta Nº 4, km 2 (1836) Llavallol, Buenos Aires, Argentina 3 Phytopathology, CIDEFI, FCAyF-UNLP, CONICET. Calle 60 y 119 (1900) La Plata, Buenos Aires, Argentina Vol. 57, No. 1: 62–71, 2017 Abstract DOI: 10.1515/jppr-2017-0009 Th e eff ect of loose kernel smut fungus Sporisorium cruentum on Sorghum halepense (John- son grass) was investigated in vitro and in greenhouse experiments. Smut infection in- Received: July 13, 2016 duced a decrease in the dry matter of rhizomes and aerial vegetative parts of the plants Accepted: January 17, 2017 evaluated. Moreover, the diseased plants showed a lower height than controls. Th e infec- tion resulted in multiple smutted buds that caused small panicles infected with the fungus. *Corresponding address: In addition, changes were observed in the structural morphology of the host. Leaf tissue [email protected] sections showed hyphae degrading chloroplasts and vascular bundles colonized by the fun- gus. Subsequently, cells collapsed and widespread necrosis was observed as a symptom of the disease. Th e pathogen did not colonize the gynoecium of Sorghum plants until the tas- sel was fully developed. Th e sporulation process of the fungus led to a total disintegration of anthers and tissues. -
Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system. -
Part I. Grain Mold, Head Smut, and Ergot
® The European Journal of Plant Science and Biotechnology ©2012 Global Science Books Sorghum Pathology and Biotechnology - A Fungal Disease Perspective: Part I. Grain Mold, Head Smut, and Ergot Christopher R. Little1 • Ramasamy Perumal2 • Tesfaye Tesso3 • Louis K. Prom4 • Gary N. Odvody5 • Clint W. Magill6* 1 Department of Plant Pathology, Kansas State University, Manhattan, Kansas 66506, USA 2 Agricultural Research Center-Hays, Kansas State University, Hays, Kansas, 67601, USA 3 Department of Agronomy, Kansas State University, Manhattan, Kansas 66506, USA 4 Southern Plains Agricultural Research Center, USDA-ARS, College Station, Texas 77845, USA 5 Department of Plant Pathology and Microbiology, Texas AgriLife Sciences, Corpus Christi, Texas 78406, USA 6 Department of Plant Pathology and Microbiology, Texas A&M University, College Station, Texas 77843, USA Corresponding author : * [email protected] ABSTRACT Three common sorghum diseases, grain mold, head smut and ergot, each of which is directly related to seed production and quality are covered in this review. Each is described with respect to the causal organism or organisms, infection process, global distribution, pathogen variability and effects on grain production. In addition, screening methods for identifying resistant cultivars and the genetic basis for host resistance including molecular tags for resistance genes are described where possible. _____________________________________________________________________________________________________________ Keywords: Claviceps africana, -
View Full Text Article
Agri. Reviews, 32 (3): 202 - 208, 2011 AGRICULTURAL RESEARCH COMMUNICATION CENTRE www.arccjournals.com / indianjournals.com MANAGEMENT OF GRAIN SMUT IN SEED PRODUCTION OF RABI SORGHUM [SORGHUM BICOLOR (L. )MOENCI-11 -A REVIEW Ashok S. Sajjan*, B.B. Patil, M.M. Jamadar and Somanagounda B. Patil Department of Seed Science and Technology University of Agricultural Sciences, Dharwad - 580 005, India. Received : 01-07-2011 Accepted : 10-09-2011 ABSTRACT The grain smut [Sporisorium sorghi (Link.)Willd] pathogen on sorghum is externally seed borne. The smut sori break during threshing releasing the spores; that adhere to the surface of healthy seeds and remain dormant till next season. The infection takes place before the seedlings emerge out. The conditions suited for delayed germination of seeds favour the smut infection. An attempt has been made to find out the suitable fungicides for the management of grain smut of sorghum. Among the several fungitoxicants reviewed belonging to different groups; the seeds treated with carboxin+thiram (Vitavax power) followed by sulphur @ 3.0 g kg 1 just before sowing recorded significantly higher seed yield and lesser smut incidence and better seed quality parameters. Key words : Vitavax, Sorghum, Fungicides, Vigour Index, Smut. Sorghum bicolor [(L. )Moench] commonlybeen reported in certain areas, and the value of known as `jowar' is the fifth most important cerealthe grain destroyed was compared at several in the world next to wheat, rice, maize and barley.million sterlings (Butler, 1918). Pande et al., The rabi sorghum accounts for 56.3 per cent of(1997) observed that, the incidence of grain smut the total area under cultivation and 46.4 per centranged from less than 1 per cent to more than 40 of the total production. -
Smut Fungi of Iran
Mycosphere 4 (3): 363–454 (2013) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2013 Online Edition Doi 10.5943/mycosphere/4/3/2 Smut fungi of Iran Vánky K1 and Abbasi M2 1 Herbarium Ustilaginales Vánky (HUV), Gabriel-Biel-Str. 5, D-72076 Tübingen, Germany 2 Iranian Research Institute of Plant Protection, Department of Botany, P.O. Box 1454, Tehran 19395, Iran Vánky K, Abbasi M 2013 – Smut fungi of Iran. Mycosphere 4(3), 363–454, Doi 10.5943/mycosphere/4/3/2 Abstract A short history of the knowledge of Iranian smut fungi is given followed by an account of the 99 known smut fungus species (Ustilaginomycetes) from Iran. Each species is presented with its authors, place of publication, synonyms, description, host plants and geographic distribution. A key to the 16 genera, to which these smuts belong, and keys to the species within each genus are given. There is also a host plant – smut fungus index. The following six species are known only from Iran: Anthracoidea songorica, Entyloma majewskii, Tilletia rostrariae, Tranzscheliella iranica, Urocystis behboudii and Urocystis phalaridis. Key words – Biodiversity – Iran – parasitic microfungi – smut fungi – synonyms – Ustilaginomycetes Introduction A short history of the knowledge of the Iranian smut fungi Mycology in Iran started in 1830 with the report of Parmelia esculenta (Goebel 1830). Thirty years later Buhse (1860) published a comprehensive paper about plants, lichens and fungi of Transcaucasia and Persia. He reported 33 species of fungi from this area, but no smut. The first smut fungus, Tilletia sorghi (= Sporisorium sorghi) was reported on Sorghum sp. -
University of São Paulo “Luiz De Queiroz”College of Agriculture
University of São Paulo “Luiz de Queiroz”College of Agriculture Molecular variability among Brazilian strains of the sugarcane smut pathogen and the genetic basis of host specialization in smut fungi Juliana Benevenuto Thesis presented to obtain the degree of Doctor in Science. Area: Genetics and Plant Breeding Piracicaba 2017 Juliana Benevenuto Biologist Molecular variability among Brazilian strains of the sugarcane smut pathogen and the genetic basis of host specialization in smut fungi Advisor: Prof. PhD. CLAUDIA BARROS MONTEIRO-VITORELLO Thesis presented to obtain the degree of Doctor in Science. Area: Genetics and Plant Breeding Piracicaba 2017 2 Dados Internacionais de Catalogação na Publicação DIVISÃO DE BIBLIOTECA – DIBD/ESALQ/USP Benevenuto, Juliana Molecular variability among Brazilian strains of the sugarcane smut pathogen and the genetic basis of host specialization in smut fungi / Juliana Benevenuto. - - Piracicaba, 2017. 90 p. Tese (Doutorado) - - USP / Escola Superior de Agricultura “Luiz de Queiroz”. 1. Doenças do Carvão 2. Cana-de-açúcar 3. Efetores 4. Genômica 5. Adaptação ao hospedeiro I. Título 3 With all my love and gratitude To my parents José Geraldo and Marta To my brothers Ivo and Ivan To my future husband Luis Felipe 4 ACKNOWLEDGEMENTS This thesis was accomplished with the direct and indirect support of many people and institutions: I acknowledge and thank the University of São Paulo (USP), specially the “Luiz de Queiroz College of Agriculture” campus (ESALQ). The opportunity to carry out my PhD studies at USP is the realization of a dream. From Minas Gerais, I have always admired the excellence of this institution. I thank the Department of Genetics and the Graduate Program of Genetics and Plant Breeding, extended to professors, staff, and collegues, for the intellectual and practical support and good relationship. -
Taxonomic Revision of Ustilago, Sporisorium and Macalpinomyces
Persoonia 29, 2012: 116–132 View metadata,www.ingentaconnect.com/content/nhn/pimj citation and similar papers at core.ac.uk RESEARCH ARTICLE http://dx.doi.org/10.3767/003158512X661462brought to you by CORE provided by Queensland DAF eResearch Archive Taxonomic revision of Ustilago, Sporisorium and Macalpinomyces A.R. McTaggart1,2,3,5, R.G. Shivas1,2, A.D.W. Geering1,2,5, K. Vánky4, T. Scharaschkin1,3 Key words Abstract Morphological characters within the Ustilago-Sporisorium-Macalpinomyces complex are defined explicitly. The genera Sporisorium and Anthracocystis are emended to reflect morphological synapomorphies. smut fungi Three new genera, Langdonia, Stollia and Triodiomyces are described based on soral synapomorphies and host systematics classification. The new classification of the Ustilago-Sporisorium-Macalpinomyces complex incorporates 142 new taxonomy taxonomic combinations. Ustilaginaceae Ustilaginomycotina Article info Received: 18 May 2012; Accepted: 9 October 2012; Published: 17 December 2012. INTRODUCTION genera, Langdonia, Stollia and Triodiomyces are proposed to accommodate newly resolved clades (Fig. 1). The three genera of smut fungi, Ustilago, Sporisorium and Ma- calpinomyces, form a complex that has eluded resolution by Definitions of soral characters in the morphology (Langdon & Fullerton 1975, Vánky 1991, Piepen- Ustilago-Sporisorium-Macalpinomyces complex bring et al. 1998) and molecular phylogenetic analysis (Stoll The interpretation of soral morphology is inconsistent for many et al. 2003, 2005). Two suggestions to reconcile the taxonomy descriptions of smut species. For example, Sporisorium cons- of the complex have been proposed. The first was to break up anguineum, Macalpinomyces spermophorus and M. viridans the current taxa into several smaller genera and subgenera, were described with columellae, but these structures are not and the second to unify the three genera into a single genus, homologous with columellae in Sporisorium s.str. -
College of Agriculture Molecular Variability Among Brazilian Strains
University of São Paulo “Luiz de Queiroz”College of Agriculture Molecular variability among Brazilian strains of the sugarcane smut pathogen and the genetic basis of host specialization in smut fungi Juliana Benevenuto Thesis presented to obtain the degree of Doctor in Science. Area: Genetics and Plant Breeding Piracicaba 2017 Juliana Benevenuto Biologist Molecular variability among Brazilian strains of the sugarcane smut pathogen and the genetic basis of host specialization in smut fungi Advisor: Prof. PhD. CLAUDIA BARROS MONTEIRO-VITORELLO Thesis presented to obtain the degree of Doctor in Science. Area: Genetics and Plant Breeding Piracicaba 2017 2 Dados Internacionais de Catalogação na Publicação DIVISÃO DE BIBLIOTECA – DIBD/ESALQ/USP Benevenuto, Juliana Molecular variability among Brazilian strains of the sugarcane smut pathogen and the genetic basis of host specialization in smut fungi / Juliana Benevenuto. - - Piracicaba, 2017. 90 p. Tese (Doutorado) - - USP / Escola Superior de Agricultura “Luiz de Queiroz”. 1. Doenças do Carvão 2. Cana-de-açúcar 3. Efetores 4. Genômica 5. Adaptação ao hospedeiro I. Título 3 With all my love and gratitude To my parents José Geraldo and Marta To my brothers Ivo and Ivan To my future husband Luis Felipe 4 ACKNOWLEDGEMENTS This thesis was accomplished with the direct and indirect support of many people and institutions: I acknowledge and thank the University of São Paulo (USP), specially the “Luiz de Queiroz College of Agriculture” campus (ESALQ). The opportunity to carry out my PhD studies at USP is the realization of a dream. From Minas Gerais, I have always admired the excellence of this institution. I thank the Department of Genetics and the Graduate Program of Genetics and Plant Breeding, extended to professors, staff, and collegues, for the intellectual and practical support and good relationship. -
On Farm Training and Demonstration of Covered Smut (Sphacelotheca Sorghi Clint) Management Technologies on Sorghum
Research Article ISSN 2304-2613 (Print); ISSN 2305-8730 (Online) On Farm Training and Demonstration of Covered Smut (Sphacelotheca Sorghi Clint) Management Technologies on Sorghum Asfaw Azanaw1*, Misganaw Gelaye2, Yohannes Kefale3 1Plant pathologist, Gondar Agricultural Research Center, Gondar, P. O. Box 1337, ETHIOPIA 2,3Junior Researcher, Gondar Agricultural Research Center, Gondar, P. O. Box 1337, ETHIOPIA *E-mail for correspondence: [email protected] https://doi.org/10.18034/abr.v10i1.456 ABSTRACT Sorghum suffers from a lot of pests among which covered smut is the most important. Covered smut induced by the fungus Sporisorium sorghi and it is extremely seed borne and seedling infection occurs at the time of germination and emergence of seedlings. The incidence of covered kernel smut varies from place to place, but in Ethiopia it was estimated to be about 50%. This activity initiated to provide practical training on sorghum covered identification, monitoring and technical skills to experts and farmers and to demonstrate effect of seed dressing fungicides and traditional packages against sorghum covered smut. The field demonstration was laid out on single plot with 4 treatments; Cow urine 1:1 (v/v) mixture, Thiram, Apron plus with 3g/kg and Control untreated as check. The plot size of the experiment was 10m x 10m with plant spacing of 15cm and 75cm row spacing. Data on covered smut incidence and grain yield were recorded yield loss and partial budget analysis was made. Training of trainers on sorghum agronomic practices and diseases was given to 79 male and 37 female development agents for four woreda in central Gondar and development agents also gave training for 7925 male and 502 female farmers.