Subunit Profiling and Functional Characteristics of Acetylcholine Receptors in GT1-7 Cells
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Familial Cortical Myoclonus Caused by Mutation in NOL3 by Jonathan Foster Rnsseil DISSERTATION Submitted in Partial Satisfaction
Familial Cortical Myoclonus Caused by Mutation in NOL3 by Jonathan Foster Rnsseil DISSERTATION Submitted in partial satisfaction of the requirements for the degree of DOCTOR OF PHILOSOPHY in Biomedical Sciences in the Copyright 2013 by Jonathan Foster Russell ii I dedicate this dissertation to Mom and Dad, for their adamantine love and support iii No man has earned the right to intellectual ambition until he has learned to lay his course by a star which he has never seen—to dig by the divining rod for springs which he may never reach. In saying this, I point to that which will make your study heroic. For I say to you in all sadness of conviction, that to think great thoughts you must be heroes as well as idealists. Only when you have worked alone – when you have felt around you a black gulf of solitude more isolating than that which surrounds the dying man, and in hope and in despair have trusted to your own unshaken will – then only will you have achieved. Thus only can you gain the secret isolated joy of the thinker, who knows that, a hundred years after he is dead and forgotten, men who never heard of him will be moving to the measure of his thought—the subtile rapture of a postponed power, which the world knows not because it has no external trappings, but which to his prophetic vision is more real than that which commands an army. -Oliver Wendell Holmes, Jr. iv ACKNOWLEDGMENTS I am humbled by the efforts of many, many others who were essential for this work. -
Ion Channels
UC Davis UC Davis Previously Published Works Title THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels. Permalink https://escholarship.org/uc/item/1442g5hg Journal British journal of pharmacology, 176 Suppl 1(S1) ISSN 0007-1188 Authors Alexander, Stephen PH Mathie, Alistair Peters, John A et al. Publication Date 2019-12-01 DOI 10.1111/bph.14749 License https://creativecommons.org/licenses/by/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2019/20: Ion channels. British Journal of Pharmacology (2019) 176, S142–S228 THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels Stephen PH Alexander1 , Alistair Mathie2 ,JohnAPeters3 , Emma L Veale2 , Jörg Striessnig4 , Eamonn Kelly5, Jane F Armstrong6 , Elena Faccenda6 ,SimonDHarding6 ,AdamJPawson6 , Joanna L Sharman6 , Christopher Southan6 , Jamie A Davies6 and CGTP Collaborators 1School of Life Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK 2Medway School of Pharmacy, The Universities of Greenwich and Kent at Medway, Anson Building, Central Avenue, Chatham Maritime, Chatham, Kent, ME4 4TB, UK 3Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK 4Pharmacology and Toxicology, Institute of Pharmacy, University of Innsbruck, A-6020 Innsbruck, Austria 5School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, BS8 1TD, UK 6Centre for Discovery Brain Science, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2019/20 is the fourth in this series of biennial publications. The Concise Guide provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to the open access knowledgebase source of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. -
Replicated Risk Nicotinic Cholinergic Receptor Genes for Nicotine Dependence
G C A T T A C G G C A T genes Article Replicated Risk Nicotinic Cholinergic Receptor Genes for Nicotine Dependence Lingjun Zuo 1, Rolando Garcia-Milian 2, Xiaoyun Guo 1,3,4,*, Chunlong Zhong 5,*, Yunlong Tan 6, Zhiren Wang 6, Jijun Wang 3, Xiaoping Wang 7, Longli Kang 8, Lu Lu 9,10, Xiangning Chen 11,12, Chiang-Shan R. Li 1 and Xingguang Luo 1,6,* 1 Department of Psychiatry, Yale University School of Medicine, New Haven, CT 06510, USA; [email protected] (L.Z.); [email protected] (C.-S.R.L.) 2 Curriculum & Research Support Department, Cushing/Whitney Medical Library, Yale University School of Medicine, New Haven, CT 06510, USA; [email protected] 3 Shanghai Mental Health Center, Shanghai 200030, China; [email protected] 4 Department of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, CT 06510, USA 5 Department of Neurosurgery, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China 6 Biological Psychiatry Research Center, Beijing Huilongguan Hospital, Beijing 100096, China; [email protected] (Y.T.); [email protected] (Z.W.) 7 Department of Neurology, Shanghai First People’s Hospital, Shanghai Jiao Tong University, Shanghai 200080, China; [email protected] 8 Key Laboratory for Molecular Genetic Mechanisms and Intervention Research on High Altitude Diseases of Tibet Autonomous Region, Xizang Minzu University School of Medicine, Xianyang, Shanxi 712082, China; [email protected] 9 Provincial Key Laboratory for Inflammation and Molecular Drug Target, Medical -
Arthrogryposis and Congenital Myasthenic Syndrome Precision Panel
Arthrogryposis and Congenital Myasthenic Syndrome Precision Panel Overview Arthrogryposis or arthrogryposis multiplex congenita (AMC) is a group of nonprogressive conditions characterized by multiple joint contractures found throughout the body at birth. It usually appears as a feature of other neuromuscular conditions or part of systemic diseases. Primary cases may present prenatally with decreased fetal movements associated with joint contractures as well as brain abnormalities, decreased muscle bulk and polyhydramnios whereas secondary causes may present with isolated contractures. Congenital Myasthenic Syndromes (CMS) are a clinically and genetically heterogeneous group of disorders characterized by impaired neuromuscular transmission. Clinically they usually present with abnormal fatigability upon exertion, transient weakness of extra-ocular, facial, bulbar, truncal or limb muscles. Severity ranges from mild, phasic weakness, to disabling permanent weakness with respiratory difficulties and ultimately death. The mode of inheritance of these diseases typically follows and autosomal recessive pattern, although dominant forms can be seen. The Igenomix Arthrogryposis and Congenital Myasthenic Syndrome Precision Panel can be as a tool for an accurate diagnosis ultimately leading to a better management and prognosis of the disease. It provides a comprehensive analysis of the genes involved in this disease using next-generation sequencing (NGS) to fully understand the spectrum of relevant genes involved, and their high or intermediate penetrance. -
Supplementary Table 1
Supplementary Table 1. 492 genes are unique to 0 h post-heat timepoint. The name, p-value, fold change, location and family of each gene are indicated. Genes were filtered for an absolute value log2 ration 1.5 and a significance value of p ≤ 0.05. Symbol p-value Log Gene Name Location Family Ratio ABCA13 1.87E-02 3.292 ATP-binding cassette, sub-family unknown transporter A (ABC1), member 13 ABCB1 1.93E-02 −1.819 ATP-binding cassette, sub-family Plasma transporter B (MDR/TAP), member 1 Membrane ABCC3 2.83E-02 2.016 ATP-binding cassette, sub-family Plasma transporter C (CFTR/MRP), member 3 Membrane ABHD6 7.79E-03 −2.717 abhydrolase domain containing 6 Cytoplasm enzyme ACAT1 4.10E-02 3.009 acetyl-CoA acetyltransferase 1 Cytoplasm enzyme ACBD4 2.66E-03 1.722 acyl-CoA binding domain unknown other containing 4 ACSL5 1.86E-02 −2.876 acyl-CoA synthetase long-chain Cytoplasm enzyme family member 5 ADAM23 3.33E-02 −3.008 ADAM metallopeptidase domain Plasma peptidase 23 Membrane ADAM29 5.58E-03 3.463 ADAM metallopeptidase domain Plasma peptidase 29 Membrane ADAMTS17 2.67E-04 3.051 ADAM metallopeptidase with Extracellular other thrombospondin type 1 motif, 17 Space ADCYAP1R1 1.20E-02 1.848 adenylate cyclase activating Plasma G-protein polypeptide 1 (pituitary) receptor Membrane coupled type I receptor ADH6 (includes 4.02E-02 −1.845 alcohol dehydrogenase 6 (class Cytoplasm enzyme EG:130) V) AHSA2 1.54E-04 −1.6 AHA1, activator of heat shock unknown other 90kDa protein ATPase homolog 2 (yeast) AK5 3.32E-02 1.658 adenylate kinase 5 Cytoplasm kinase AK7 -
Resequencing of Nicotinic Acetylcholine Receptor Genes and Association of Common and Rare Variants with the Fagerstro¨M Test for Nicotine Dependence
Neuropsychopharmacology (2010) 35, 2392–2402 & 2010 Nature Publishing Group All rights reserved 0893-133X/10 $32.00 www.neuropsychopharmacology.org Resequencing of Nicotinic Acetylcholine Receptor Genes and Association of Common and Rare Variants with the Fagerstro¨m Test for Nicotine Dependence 1,4 1 2 2 1 Jennifer Wessel , Sarah M McDonald , David A Hinds , Renee P Stokowski , Harold S Javitz , 2 1 2 1 2 1 Michael Kennemer , Ruth Krasnow , William Dirks , Jill Hardin , Steven J Pitts , Martha Michel , 1 2 3 1 ,1 Lisa Jack , Dennis G Ballinger , Jennifer B McClure , Gary E Swan and Andrew W Bergen* 1 2 3 Center for Health Sciences, SRI International, Menlo Park, CA, USA; Perlegen Sciences, Mountain View, CA, USA; Group Health Research 4 Institute, Seattle, WA, USA; Department of Public Health, Indiana University School of Medicine, Indianapolis, IN, USA Common single-nucleotide polymorphisms (SNPs) at nicotinic acetylcholine receptor (nAChR) subunit genes have previously been associated with measures of nicotine dependence. We investigated the contribution of common SNPs and rare single-nucleotide variants (SNVs) in nAChR genes to Fagerstro¨m test for nicotine dependence (FTND) scores in treatment-seeking smokers. Exons of 10 genes were resequenced with next-generation sequencing technology in 448 European-American participants of a smoking cessation trial, and CHRNB2 and CHRNA4 were resequenced by Sanger technology to improve sequence coverage. A total of 214 SNP/SNVs were identified, of which 19.2% were excluded from analyses because of reduced completion rate, 73.9% had minor allele frequencies o5%, and 48.1% were novel relative to dbSNP build 129. -
Profile of the Nicotinic Cholinergic Receptor Alpha 7 Subunit Gene Expression Is Associated with Response to Varenicline Treatment
Profile of the nicotinic cholinergic receptor alpha 7 subunit gene expression is associated with response to varenicline treatment Juliana Rocha Santos1, Paulo Roberto Xavier Tomaz1, Jaqueline Scholz2, Patrícia Viviane Gaya2, Tânia Ogawa Abe2, José Eduardo Krieger1, Alexandre Costa Pereira1, Paulo Caleb Júnior Lima Santos3* 1 Laboratory of Genetics and Molecular Cardiology, Instituto do Coracao (InCor), Hospital das Clinicas HCFMUSP, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil. 2 Smoking Cessation Program Department, Instituto do Coracao (InCor), Hospital das Clinicas HCFMUSP, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil. 3 Department of Pharmacology – Escola Paulista de Medicina, Universidade Federal de Sao Paulo, EPM-Unifesp, Sao Paulo, Brazil. Supplementary table 1 - Median values of ∆CT genes according with time periods and outcome groups Resistant T0 Resistant T2 Resistant T4 ∆CT IC 95% ∆CT IC 95% ∆CT IC 95% CHRNA5 8.18 (7.32 – 8.70) 8.45 (7.48 – 8.87) 7.67 (7.27 – 9.05) CHRNA7 6.62 (6.17 – 6.97) 8.02 (7.07 – 8.48) 7.19 (6.96 – 7.86) CHRNG 6.20 (5.79 – 6.95) 6.47 (6.01 – 6.68) 6.63 (6.02 – 7.02) COMT 4.67 (4.40– 5.01) 4.80 (4.43 – 5.03) 4.87 (4.52 – 5.24) Success T0 Success T2 Success T4 ∆CT IC 95% ∆CT IC 95% ∆CT IC 95% CHRNA5 8.32 (7.38 – 9.17) 7.07 (6.53 – 8.96) 8.37 (7.54 – 8.82) CHRNA7 7.26 (6.11 – 8.42) 7.04 (6.40 – 7.79) 7.38 (6.76 – 8.20) CHRNG 6.82 (6.19 – 7.74) 6.83 (6.56 – 7.33) 6.59 (6.25 – 7.03) COMT 4.88 (4.30 – 5.11) 4.58 (4.33 -5.15) 4.81 (4.48 – 5.16) ∆CT = (CT target gene – CThousekeepings genes mean). -
The Neuromuscular Junction Is a Focal Point of Mtorc1 Signaling in Sarcopenia
ARTICLE https://doi.org/10.1038/s41467-020-18140-1 OPEN The neuromuscular junction is a focal point of mTORC1 signaling in sarcopenia Daniel J. Ham 1,4, Anastasiya Börsch1,4, Shuo Lin1, Marco Thürkauf1, Martin Weihrauch1, Judith R. Reinhard1, Julien Delezie1, Fabienne Battilana1, Xueyong Wang2, Marco S. Kaiser 1, Maitea Guridi1, Michael Sinnreich3, Mark M. Rich 2, Nitish Mittal1, Lionel A. Tintignac3, Christoph Handschin 1, Mihaela Zavolan 1,4 & ✉ Markus A. Rüegg 1,4 1234567890():,; With human median lifespan extending into the 80s in many developed countries, the societal burden of age-related muscle loss (sarcopenia) is increasing. mTORC1 promotes skeletal muscle hypertrophy, but also drives organismal aging. Here, we address the question of whether mTORC1 activation or suppression is beneficial for skeletal muscle aging. We demonstrate that chronic mTORC1 inhibition with rapamycin is overwhelmingly, but not entirely, positive for aging mouse skeletal muscle, while genetic, muscle fiber-specific acti- vation of mTORC1 is sufficient to induce molecular signatures of sarcopenia. Through inte- gration of comprehensive physiological and extensive gene expression profiling in young and old mice, and following genetic activation or pharmacological inhibition of mTORC1, we establish the phenotypically-backed, mTORC1-focused, multi-muscle gene expression atlas, SarcoAtlas (https://sarcoatlas.scicore.unibas.ch/), as a user-friendly gene discovery tool. We uncover inter-muscle divergence in the primary drivers of sarcopenia and identify the neuromuscular junction as a focal point of mTORC1-driven muscle aging. 1 Biozentrum, University of Basel, Basel, Switzerland. 2 Department of Neurology, Neuroscience, Cell Biology, and Physiology, Wright State University, Dayton, OH, USA. 3 Department of Biomedicine, Pharmazentrum, University of Basel, Basel, Switzerland. -
GM1 Signaling Through the GDNF Receptor
Zebrafish Neuronal Nicotinic Acetylcholine Receptors: Cloning, Expression, and Functional Analysis DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Kristin Michelle Ackerman ***** The Ohio State University 2009 Dissertation Committee: Approved by Professor Robert Thomas Boyd, Advisor Professor Christine Beattie _________________________________ Professor Dennis McKay Advisor Professor James Jontes Integrated Biomedical Sciences ABSTRACT Cigarette smoking is a major public health concern, in that, over one billion people or one in three adults in the world smoke (WHO, 2006). Even more alarming is that approximately 20% of pregnant women in the western world continue to smoke during pregnancy despite a number of fetal complications linked with cigarette smoking (CDC, 2004, 2006 and U.S. Surgeon General’s Report (Chapter 5; pages 180–194). Smoking during pregnancy can cause serious health problems for both mother and child, such as pregnancy complications, premature birth, low-birth-weight infants, stillbirth and infant death (U.S. Department of Health and Human Services, 2004). Nicotine exposure in utero can also result in long-term anatomical, behavioral and cognitive deficits (Sexton et al., 1990; Olds et al., 1994; Slotkin 1992, 2004, 2008). Nicotine, the main addictive chemical component in cigarette tobacco, is a likely contributor to the adverse outcomes, as fetal brain and spinal cord are primary targets. Nicotine mediates its actions through nicotinic acetylcholine receptors, nAChRs, which are widely distributed throughout the body. This class of receptors belongs to the ligand gated ion channel superfamily, which includes GABA A, glycine, 5-HT3, and NMDA-type glutamate receptors. -
GENETIC of ADDICTION: COMMON and UNCOMMON FACTORS Giada Juli1 & Luigi Juli2 1Catanzaro, Italy 2Mental Health Department, Catanzaro, Italy
Psychiatria Danubina, 2015; Vol. 27, Suppl. 1, pp 383–390 Conference paper © Medicinska naklada - Zagreb, Croatia GENETIC OF ADDICTION: COMMON AND UNCOMMON FACTORS Giada Juli1 & Luigi Juli2 1Catanzaro, Italy 2Mental Health Department, Catanzaro, Italy SUMMARY Epidemiological studies strongly suggest that genetic factors operate at all steps of addictions, including vulnerability to initiation, continued use, and propensity to become dependent. Several studies have been popular to investigate the relative contributions of genetic and environmental factors, including the availability of and exposure to a substance, and shared and unique environments. The genetic influence on addiction has proved to be substantial, and heritabilities for most addictive disorders are moderate to high. In this work we evaluate the current status of data that analyzed genetic contribution in addictions. Key words: addictions- genetic factors-dependence * * * * * INTRODUCTION have analyzed alcohol addiction (or alcohol depen- dence) but the genetic influence have been evaluated Addiction is characterized by a compulsion to take a also for the susceptibility of tobacco addiction (or substance, with goal-directed behavior toward excessive dependence), cannabis, opioids and other psychoactive substance intake and a loss of control in limiting intake. substances. The aim of this review is to summarize the Recently, the Addictive Disorders have been enri- available literature that underly common and un- ched not only by synthetic substances of use/abuse, but common factors in genetic of addictions. also by behaviors capable to promote psychopatho- logical states which are disabling and serious. In fact, ALCOHOL DEPENDENCE (AD) apart from alcohol, tobacco, cocaine, cannabis, heroin and other substances, science has identified new addic- It is known that alcohol dependence (AD) can be tions such as Eating Disorders (Juli 2014), Gambling considered as a familiar trait with well characterized Addiction, Internet and Sex Addiction. -
NIH Public Access Author Manuscript Neurotoxicology
NIH Public Access Author Manuscript Neurotoxicology. Author manuscript; available in PMC 2012 October 1. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Neurotoxicology. 2011 October ; 32(5): 661±665. doi:10.1016/j.neuro.2011.06.002. Channelopathies: Summary of the Hot Topic Keynotes Session Jason P. Magby1, April P. Neal2, William D. Atchison2, Isaac P. Pessah3, and Timothy J. Shafer4 1Joint Graduate Program in Toxicology, Rutgers University / University of Medicine and Dentistry New Jersey 170 Frelinghuysen Rd. Piscataway, NJ 2Department of Pharmacology and Toxicology, Michigan State University, East Lansing, Michigan 3Department of Molecular Biosciences, School of Veterinary Medicine, University of California, Davis, CA 4Integrated Systems Toxicology Division, National Health and Environmental Effects Research Laboratory, Office of Research and Development, US Environmental Protection Agency, Research Triangle Park, NC, USA The “Hot Topic Keynotes: Channelopathies” session of the 26th International Neurotoxicology Conference brought together toxicologists studying interactions of environmental toxicants with ion channels, to review the state of the science of channelopathies and to discuss the potential for interactions between environmental exposures and channelopathies. This session presented an overview of chemicals altering ion channel function and background about different channelopathy models. It then explored the available evidence that individuals with channelopathies may or may not be more sensitive to effects of chemicals. Dr. Tim Shafer began his presentation by defining what channelopathies are and presenting several examples of channelopathies. Channelopathies are mutations that alter the function of ion channels such that they result in clinically-definable syndromes including forms of epilepsy, migraine headache, ataxia and other neurological and cardiac syndromes (Kullmann, 2010). -
Asymmetric Transmitter Binding Sites of Fetal Muscle Acetylcholine Receptors Shape Their Synaptic Response
Asymmetric transmitter binding sites of fetal muscle acetylcholine receptors shape their synaptic response Tapan K. Nayak and Anthony Auerbach1 Department of Physiology and Biophysics, State University of New York, Buffalo, NY 14214 Edited by Jean-Pierre Changeux, Institut Pasteur, Paris, France, and approved July 3, 2013 (received for review May 1, 2013) Neuromuscular acetylcholine receptors (AChRs) have two trans- sites are functionally equivalent, but in the fetal subtype, the α−γ mitter binding sites: at α−δ and either α−γ (fetal) or α–e (adult) site has a higher affinity for ACh and provides more energy for subunit interfaces. The γ-subunit of fetal AChRs is indispensable gating than α−δ/e. Simulations of end plate currents suggest the for the proper development of neuromuscular synapses. We esti- differences in activation properties between e- and γ-AChR that mated parameters for acetylcholine (ACh) binding and gating from may impact synaptic development. single channel currents of fetal mouse AChRs expressed in tissue- cultured cells. The unliganded gating equilibrium constant is smaller Results and less voltage-dependent than in adult AChRs. However, the Definitions and Models. AChRs undergo a global, reversible allo- α−γ binding site has a higher affinity for ACh and provides more steric transition between closed (C) and open channel (O) states. binding energy for gating compared with α−e; therefore, the dili- This complex reaction includes numerous changes in structure ganded gating equilibrium constant at −100 mV is comparable for and dynamics at the binding sites (that set the affinity for ago- both receptor subtypes. The −2.2 kcal/mol extra binding energy nist), side chains and domains throughout the protein (that set from α−γ compared with α−δ and α−e is accompanied by a higher the equilibrium constant), and narrow regions of the pore (that resting affinity for ACh, mainly because of slower transmitter dis- set the ionic conductance).