Mechanisms of Wnt Signaling in Development
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Long Noncoding Rnas: Functional Surprises from the RNA World
Downloaded from genesdev.cshlp.org on September 25, 2021 - Published by Cold Spring Harbor Laboratory Press REVIEW Long noncoding RNAs: functional surprises from the RNA world Jeremy E. Wilusz,1 Hongjae Sunwoo,2 and David L. Spector1,3 1Watson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA; 2Graduate Program in Molecular and Cellular Biology, Stony Brook University, Stony Brook, New York 11794 Most of the eukaryotic genome is transcribed, yielding complexity. In addition, there has been an explosion of a complex network of transcripts that includes tens of research addressing possible functional roles for the thousands of long noncoding RNAs with little or no other 98% of the human genome that does not encode protein-coding capacity. Although the vast majority of proteins. Rather unexpectedly, transcription is not lim- long noncoding RNAs have yet to be characterized thor- ited to protein-coding regions, but is instead pervasive oughly, many of these transcripts are unlikely to represent throughout the mammalian genome as demonstrated by transcriptional ‘‘noise’’ as a significant number have been large-scale cDNA cloning projects (Carninci et al. 2005; shown to exhibit cell type-specific expression, localiza- Katayama et al. 2005) and genomic tiling arrays (Bertone tion to subcellular compartments, and association with et al. 2004; Cheng et al. 2005; Birney et al. 2007; Kapranov human diseases. Here, we highlight recent efforts that et al. 2007a). In fact, >90% of the human genome is likely have identified a myriad of molecular functions for long to be transcribed (Birney et al. 2007), yielding a complex noncoding RNAs. -
Perspectives
Copyright 0 1994 by the Genetics Society of America Perspectives Anecdotal, Historical and Critical Commentaries on Genetics Edited by James F. Crow and William F. Dove A Century of Homeosis, A Decade of Homeoboxes William McGinnis Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520-8114 NE hundred years ago, while the science of genet- ing mammals, and were proposed to encode DNA- 0 ics still existed only in the yellowing reprints of a binding homeodomainsbecause of a faint resemblance recently deceased Moravian abbot, WILLIAMBATESON to mating-type transcriptional regulatory proteins of (1894) coined the term homeosis to define a class of budding yeast and an even fainter resemblance to bac- biological variations in whichone elementof a segmen- terial helix-turn-helix transcriptional regulators. tally repeated array of organismal structures is trans- The initial stream of papers was a prelude to a flood formed toward the identity of another. After the redis- concerning homeobox genes and homeodomain pro- coveryof MENDEL’Sgenetic principles, BATESONand teins, a flood that has channeled into a steady river of others (reviewed in BATESON1909) realized that some homeo-publications, fed by many tributaries. A major examples of homeosis in floral organs and animal skel- reason for the continuing flow of studies is that many etons could be attributed to variation in genes. Soon groups, working on disparate lines of research, have thereafter, as the discipline of Drosophila genetics was found themselves swept up in the currents when they born and was evolving into a formidable intellectual found that their favorite protein contained one of the force enriching many biologicalsubjects, it gradually be- many subtypes of homeodomain. -
The Crosstalk Between FAK and Wnt Signaling Pathways in Cancer and Its Therapeutic Implication
International Journal of Molecular Sciences Review The Crosstalk between FAK and Wnt Signaling Pathways in Cancer and Its Therapeutic Implication Janine Wörthmüller * and Curzio Rüegg * Laboratory of Experimental and Translational Oncology, Pathology, Department of Oncology, Microbiology and Immunology (OMI), Faculty of Science and Medicine, University of Fribourg, CH-1700 Fribourg, Switzerland * Correspondence: [email protected] (J.W.); [email protected] (C.R.) Received: 31 October 2020; Accepted: 26 November 2020; Published: 30 November 2020 Abstract: Focal adhesion kinase (FAK) and Wnt signaling pathways are important contributors to tumorigenesis in several cancers. While most results come from studies investigating these pathways individually, there is increasing evidence of a functional crosstalk between both signaling pathways during development and tumor progression. A number of FAK–Wnt interactions are described, suggesting an intricate, context-specific, and cell type-dependent relationship. During development for instance, FAK acts mainly upstream of Wnt signaling; and although in intestinal homeostasis and mucosal regeneration Wnt seems to function upstream of FAK signaling, FAK activates the Wnt/β-catenin signaling pathway during APC-driven intestinal tumorigenesis. In breast, lung, and pancreatic cancers, FAK is reported to modulate the Wnt signaling pathway, while in prostate cancer, FAK is downstream of Wnt. In malignant mesothelioma, FAK and Wnt show an antagonistic relationship: Inhibiting FAK signaling activates the Wnt pathway and vice versa. As the identification of effective Wnt inhibitors to translate in the clinical setting remains an outstanding challenge, further understanding of the functional interaction between Wnt and FAK could reveal new therapeutic opportunities and approaches greatly needed in clinical oncology. -
Wnt Signaling in Neuromuscular Junction Development
Downloaded from http://cshperspectives.cshlp.org/ on September 23, 2021 - Published by Cold Spring Harbor Laboratory Press Wnt Signaling in Neuromuscular Junction Development Kate Koles and Vivian Budnik Department of Neurobiology, University of Massachusetts Medical School, Worcester, Massachusetts 01605 Correspondence: [email protected] Wnt proteins are best known for their profound roles in cell patterning, because they are required for the embryonic development of all animal species studied to date. Besides regulating cell fate, Wnt proteins are gaining increasing recognition for their roles in nervous system development and function. New studies indicate that multiple positive and negative Wnt signaling pathways take place simultaneously during the formation of verte- brate and invertebrate neuromuscular junctions. Although some Wnts are essential for the formation of NMJs, others appear to play a more modulatory role as part of multiple signaling pathways. Here we review the most recent findings regarding the function of Wnts at the NMJ from both vertebrate and invertebrate model systems. nt proteins are evolutionarily conserved, though important roles for Wnt signaling have Wsecreted lipo-glycoproteins involved in a become known from studies in both the central wide range of developmental processes in all and peripheral nervous system, this article is metazoan organisms examined to date. In ad- concerned with the role of Wnts at the NMJ. dition to governing many embryonic develop- mental processes, Wnt signaling is also involved WNT LIGANDS, RECEPTORS, AND WNT in nervous system maintenance and function, SIGNALING PATHWAYS and deregulation of Wnt signaling pathways oc- curs in many neurodegenerative and psychiatric Wnts and their receptors comprise a large fam- diseases (De Ferrari and Inestrosa 2000; Carica- ily of proteins. -
Human B-Cell Proliferation and Intracellular Signaling: Part 3
1872 Diabetes Volume 64, June 2015 Andrew F. Stewart,1 Mehboob A. Hussain,2 Adolfo García-Ocaña,1 Rupangi C. Vasavada,1 Anil Bhushan,3 Ernesto Bernal-Mizrachi,4 and Rohit N. Kulkarni5 Human b-Cell Proliferation and Intracellular Signaling: Part 3 Diabetes 2015;64:1872–1885 | DOI: 10.2337/db14-1843 This is the third in a series of Perspectives on intracel- signaling pathways in rodent and human b-cells, with lular signaling pathways coupled to proliferation in pan- a specific focus on the links between b-cell proliferation creatic b-cells. We contrast the large knowledge base in and intracellular signaling pathways (1,2). We highlight rodent b-cells with the more limited human database. what is known in rodent b-cells and compare and contrast With the increasing incidence of type 1 diabetes and that to the current knowledge base in human b-cells. In- the recognition that type 2 diabetes is also due in part variably, the human b-cell section is very brief compared fi b to a de ciency of functioning -cells, there is great ur- with the rodent counterpart, reflecting the still primitive gency to identify therapeutic approaches to expand hu- state of our understanding of mitogenic signaling in hu- b man -cell numbers. Therapeutic approaches might man b-cells. To emphasize this difference, each figure is include stem cell differentiation, transdifferentiation, or divided into two panels, one summarizing rodent b-cell expansion of cadaver islets or residual endogenous signaling and one for human b-cells. Our intended audi- b-cells. In these Perspectives, we focus on b-cell ence includes trainees in b-cell regeneration as well as proliferation. -
Phosphorylation, Expression and Function of the Ultrabithorax Protein Family in Drosophila Melanogaster
Development 112, 1077-1093 (1991) 1077 Printed in Great Britain © The Company of Biologists Limited 1991 Phosphorylation, expression and function of the Ultrabithorax protein family in Drosophila melanogaster ELIZABETH R. GAVIS* and DAVID S. HOGNESSt't Department of Biochemistry, Beckman Center, Stanford University School of Medicine, Stanford, California 94305 USA * Present address: Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, Massachusetts 02142 USA t Present address: Department of Developmental Biology, Beckman Center, Stanford University School of Medicine, Stanford, California, 94305 USA $ Author for correspondence Summary Alternative splicing of the Ultrabithorax homeotic gene parallel those for the respective mRNAs, and all transcript generates a family of five proteins (UBX isoforms are similarly phosphorylated throughout em- isoforms) that function as transcription factors. All bryogenesis. Analysis by cotransfection assays of the isoforms contain a homeodomain within a common 99 aa promoter activation and repression functions of mutant C-terminal region (C-constant region) which is joined to UBX proteins with various deletions in the N-constant a common 247 aa N-terminal (N-constant) region by region shows that repression is generally insensitive to different combinations of three small optional elements. deletion and, hence, presumably to phosphorylation. By Unlike the UBX proteins expressed in E. coli, UBX contrast, the activation function is differentially sensitive isoforms expressed in D. melanogaster cells are phos- to the different deletions in a manner indicating the phorylated on serine and threonine residues, located absence of a discrete activating domain and instead, the primarily within a 53 aa region near the middle of the presence of multiple activating sequences spread N-constant region, to form at least five phosphorylated throughout the region. -
Mir-449 Overexpression Inhibits Papillary Thyroid Carcinoma Cell Growth by Targeting RET Kinase-Β-Catenin Signaling Pathway
INTERNATIONAL JOURNAL OF ONCOLOGY 49: 1629-1637, 2016 miR-449 overexpression inhibits papillary thyroid carcinoma cell growth by targeting RET kinase-β-catenin signaling pathway ZONGYU LI1*, XIN HUANG2*, JINKAI XU1, QINGHUA SU1, JUN ZHAO1 and JIANCANG MA1 1Department of General Surgery, The Second Affiliated Hospital of Xi'an Jiaotong University; 2Department of General Surgery, The Xi'an Central Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P.R. China Received May 20, 2016; Accepted July 13, 2016 DOI: 10.3892/ijo.2016.3659 Abstract. Papillary thyroid carcinoma (PTC) is the most miR-449 overexpression inhibited the growth of PTC by inac- common thyroid cancer and represent approximately 80% of tivating the β-catenin pathway. Thus, miR-449 may serve as a all thyroid cancers. The present study is aimed to investigate potential therapeutic strategy for the treatment of PTC. the role of microRNA (miR)-449 in the progression of PTC. Our results revealed that miR-449 was underexpressed in Introduction the collected PTC specimens compared with non-cancerous PTC tissues. Overexpression of miR-449 induced a cell cycle Thyroid cancer is the leading cause of increased morbidity and arrest at G0/G1 phase and inhibited PTC cell growth in vitro. mortality for endocrine malignancies, and papillary thyroid Further studies revealed that RET proto-oncogene (RET) is carcinoma (PTC) accounts for 80% of thyroid cancer cases (1). a novel miR-449 target, due to miR-449 bound directly to Reports have indicated that PTC have a homogeneous molec- its 3'-untranslated region and miR-449 mimic reduced the ular signature during tumorigenesis compared with other protein expression of RET. -
CIRP Promotes the Progression of Non-Small Cell Lung Cancer Through
Liao et al. Journal of Experimental & Clinical Cancer Research (2021) 40:275 https://doi.org/10.1186/s13046-021-02080-9 RESEARCH Open Access CIRP promotes the progression of non- small cell lung cancer through activation of Wnt/β-catenin signaling via CTNNB1 Yi Liao1,2†, Jianguo Feng3†, Weichao Sun1, Chao Wu2, Jingyao Li1, Tao Jing4, Yuteng Liang5, Yonghui Qian5, Wenlan Liu1,5* and Haidong Wang2* Abstract Background: Cold-inducible RNA binding protein (CIRP) is a newly discovered proto-oncogene. In this study, we investigated the role of CIRP in the progression of non-small cell lung cancer (NSCLC) using patient tissue samples, cultured cell lines and animal lung cancer models. Methods: Tissue arrays, IHC and HE staining, immunoblotting, and qRT-PCR were used to detect the indicated gene expression; plasmid and siRNA transfections as well as viral infection were used to manipulate gene expression; cell proliferation assay, cell cycle analysis, cell migration and invasion analysis, soft agar colony formation assay, tail intravenous injection and subcutaneous inoculation of animal models were performed to study the role of CIRP in NSCLC cells; Gene expression microarray was used to select the underlying pathways; and RNA immunoprecipitation assay, biotin pull-down assay, immunopurification assay, mRNA decay analyses and luciferase reporter assay were performed to elucidate the mechanisms. The log-rank (Mantel-Cox) test, independent sample T- test, nonparametric Mann-Whitney test, Spearman rank test and two-tailed independent sample T-test were used accordingly in our study. Results: Our data showed that CIRP was highly expressed in NSCLC tissue, and its level was negatively correlated with the prognosis of NSCLC patients. -
The Role of Signaling Pathways in the Development and Treatment of Hepatocellular Carcinoma
Oncogene (2010) 29, 4989–5005 & 2010 Macmillan Publishers Limited All rights reserved 0950-9232/10 www.nature.com/onc REVIEW The role of signaling pathways in the development and treatment of hepatocellular carcinoma S Whittaker1,2, R Marais3 and AX Zhu4 1Dana-Farber Cancer Institute, Boston, MA, USA; 2The Broad Institute, Cambridge, MA, USA; 3Institute of Cancer Research, London, UK and 4Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, MA, USA Hepatocellular carcinoma (HCC) is a highly prevalent, malignancy in adults (Pons-Renedo and Llovet, 2003). treatment-resistant malignancy with a multifaceted mole- For the vast majority of patients, HCC is a late cular pathogenesis. Current evidence indicates that during complication of chronic liver disease, and as such, is hepatocarcinogenesis, two main pathogenic mechanisms often associated with cirrhosis. The main risk factors for prevail: (1) cirrhosis associated with hepatic regeneration the development of HCC include infection with hepatitis after tissue damage caused by hepatitis infection, toxins B virus (HBV) or hepatitis C virus (HCV). Hepatitis (for example, alcohol or aflatoxin) or metabolic influ- infection is believed to be the main etiologic factor in ences, and (2) mutations occurring in single or multiple 480% of cases (Anzola, 2004). Other risk factors oncogenes or tumor suppressor genes. Both mechanisms include excessive alcohol consumption, nonalcoholic have been linked with alterations in several important steatohepatitis, autoimmune hepatitis, primary biliary cellular signaling pathways. These pathways are of cirrhosis, exposure to environmental carcinogens (parti- interest from a therapeutic perspective, because targeting cularly aflatoxin B) and the presence of various genetic them may help to reverse, delay or prevent tumorigenesis. -
Beta;-Catenin Signaling in Rhabdomyosarcoma
Laboratory Investigation (2013) 93, 1090–1099 & 2013 USCAP, Inc All rights reserved 0023-6837/13 Characterization of Wnt/b-catenin signaling in rhabdomyosarcoma Srinivas R Annavarapu1,8,9, Samantha Cialfi2,9, Carlo Dominici2,3, George K Kokai4, Stefania Uccini5, Simona Ceccarelli6, Heather P McDowell2,3,7 and Timothy R Helliwell1 Rhabdomyosarcoma (RMS) is the most common soft tissue sarcoma in children and accounts for about 5% of all malignant paediatric tumours. b-Catenin, a multifunctional nuclear transcription factor in the canonical Wnt signaling pathway, is active in myogenesis and embryonal somite patterning. Dysregulation of Wnt signaling facilitates tumour invasion and metastasis. This study characterizes Wnt/b-catenin signaling and functional activity in paediatric embryonal and alveolar RMS. Immunohistochemical assessment of paraffin-embedded tissues from 44 RMS showed b-catenin expression in 26 cases with cytoplasmic/membranous expression in 9/14 cases of alveolar RMS, and 15/30 cases of embryonal RMS, whereas nuclear expression was only seen in 2 cases of embryonal RMS. The potential functional significance of b-catenin expression was tested in four RMS cell lines, two derived from embryonal (RD and RD18) RMS and two from alveolar (Rh4 and Rh30) RMS. Western blot analysis demonstrated the expression of Wnt-associated proteins including b-catenin, glycogen synthase kinase-3b, disheveled, axin-1, naked, LRP-6 and cadherins in all cell lines. Cell fractionation and immunofluorescence studies of the cell lines (after stimulation by human recombinant Wnt3a) showed reduced phosphorylation of b-catenin, stabilization of the active cytosolic form and nuclear translocation of b-catenin. Reporter gene assay demonstrated a T-cell factor/lymphoid-enhancing factor-mediated transactivation in these cells. -
Loss of RET Promotes Mesenchymal Identity in Neuroblastoma Cells
cancers Article Loss of RET Promotes Mesenchymal Identity in Neuroblastoma Cells Joachim T. Siaw 1,†, Jonatan L. Gabre 1,2,† , Ezgi Uçkun 1 , Marc Vigny 3, Wancun Zhang 4, Jimmy Van den Eynden 2 , Bengt Hallberg 1 , Ruth H. Palmer 1 and Jikui Guan 1,4,* 1 Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, SE-40530 Gothenburg, Sweden; [email protected] (J.T.S.); [email protected] (J.L.G.); [email protected] (E.U.); [email protected] (B.H.); [email protected] (R.H.P.) 2 Anatomy and Embryology Unit, Department of Human Structure and Repair, Ghent University, 9000 Ghent, Belgium; [email protected] 3 Université Pierre et Marie Curie, UPMC, INSERM UMRS-839, 75005 Paris, France; [email protected] 4 Department of Pediatric Oncology Surgery, Children’s Hospital Affiliated to Zhengzhou University, Zhengzhou 450018, China; [email protected] * Correspondence: [email protected] † These authors contributed equally to this work. Simple Summary: The anaplastic lymphoma kinase (ALK) and rearranged during transfection (RET) receptor tyrosine kinases (RTKs) are expressed in both the developing neural crest and the pediatric cancer neuroblastoma. Moreover, ALK is mutated in approximately 10% of neuroblastomas. Here, we investigated ALK and RET in neuroblastoma, with the aim of better understanding their respective contributions. Using neuroblastoma cell lines, we show that ALK modulates RET signaling at the level of RET phosphorylation, as well as at the level of transcription. Using CRISPR/Cas9, we generated Citation: Siaw, J.T.; Gabre, J.L.; Uçkun, E.; Vigny, M.; Zhang, W.; Van RET knockout neuroblastoma cell lines and performed a multi-omics approach, combining RNA-Seq den Eynden, J.; Hallberg, B.; Palmer, and proteomics to characterize the effect of deleting RET in a neuroblastoma context. -
Wnt3a Upregulates Brain-Derived Insulin by Increasing Neurod1 Via
Lee et al. Molecular Brain (2016) 9:24 DOI 10.1186/s13041-016-0207-5 RESEARCH Open Access Wnt3a upregulates brain-derived insulin by increasing NeuroD1 via Wnt/β-catenin signaling in the hypothalamus Jaemeun Lee1, Kyungchan Kim1, Seong-Woon Yu1 and Eun-Kyoung Kim1,2* Abstract Background: Insulin plays diverse roles in the brain. Although insulin produced by pancreatic β-cells that crosses the blood–brain barrier is a major source of brain insulin, recent studies suggest that insulin is also produced locally within the brain. However, the mechanisms underlying the production of brain-derived insulin (BDI) are not yet known. Results: Here, we examined the effect of Wnt3a on BDI production in a hypothalamic cell line and hypothalamic tissue. In N39 hypothalamic cells, Wnt3a treatment significantly increased the expression of the Ins2 gene, which encodes the insulin isoform predominant in the mouse brain, by activating Wnt/β-catenin signaling. The concentration of insulin was higher in culture medium of Wnt3a-treated cells than in that of untreated cells. Interestingly, neurogenic differentiation 1 (NeuroD1), a target of Wnt/β-catenin signaling and one of transcription factors for insulin, was also induced by Wnt3a treatment in a time- and dose-dependent manner. In addition, the treatment of BIO, a GSK3 inhibitor, also increased the expression of Ins2 and NeuroD1. Knockdown of NeuroD1 by lentiviral shRNAs reduced the basal expression of Ins2 and suppressed Wnt3a-induced Ins2 expression. To confirm the Wnt3a-induced increase in Ins2 expression in vivo, Wnt3a was injected into the hypothalamus of mice. Wnt3a increased the expression of NeuroD1 and Ins2 in the hypothalamus in a manner similar to that observed in vitro.