Computational Investigation of Stellar Cooling, Noble Gas Nucleation, and Organic Molecular Spectra
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
An Introduction to Hartree-Fock Molecular Orbital Theory
An Introduction to Hartree-Fock Molecular Orbital Theory C. David Sherrill School of Chemistry and Biochemistry Georgia Institute of Technology June 2000 1 Introduction Hartree-Fock theory is fundamental to much of electronic structure theory. It is the basis of molecular orbital (MO) theory, which posits that each electron's motion can be described by a single-particle function (orbital) which does not depend explicitly on the instantaneous motions of the other electrons. Many of you have probably learned about (and maybe even solved prob- lems with) HucÄ kel MO theory, which takes Hartree-Fock MO theory as an implicit foundation and throws away most of the terms to make it tractable for simple calculations. The ubiquity of orbital concepts in chemistry is a testimony to the predictive power and intuitive appeal of Hartree-Fock MO theory. However, it is important to remember that these orbitals are mathematical constructs which only approximate reality. Only for the hydrogen atom (or other one-electron systems, like He+) are orbitals exact eigenfunctions of the full electronic Hamiltonian. As long as we are content to consider molecules near their equilibrium geometry, Hartree-Fock theory often provides a good starting point for more elaborate theoretical methods which are better approximations to the elec- tronic SchrÄodinger equation (e.g., many-body perturbation theory, single-reference con¯guration interaction). So...how do we calculate molecular orbitals using Hartree-Fock theory? That is the subject of these notes; we will explain Hartree-Fock theory at an introductory level. 2 What Problem Are We Solving? It is always important to remember the context of a theory. -
A Photoionization Reflectron Time‐Of‐Flight Mass Spectrometric
Articles ChemPhysChem doi.org/10.1002/cphc.202100064 A Photoionization Reflectron Time-of-Flight Mass Spectrometric Study on the Detection of Ethynamine (HCCNH2) and 2H-Azirine (c-H2CCHN) Andrew M. Turner,[a, b] Sankhabrata Chandra,[a, b] Ryan C. Fortenberry,*[c] and Ralf I. Kaiser*[a, b] Ices of acetylene (C2H2) and ammonia (NH3) were irradiated with 9.80 eV, and 10.49 eV were utilized to discriminate isomers energetic electrons to simulate interstellar ices processed by based on their known ionization energies. Results indicate the galactic cosmic rays in order to investigate the formation of formation of ethynamine (HCCNH2) and 2H-azirine (c-H2CCHN) C2H3N isomers. Supported by quantum chemical calculations, in the irradiated C2H2:NH3 ices, and the energetics of their experiments detected product molecules as they sublime from formation mechanisms are discussed. These findings suggest the ices using photoionization reflectron time-of-flight mass that these two isomers can form in interstellar ices and, upon spectrometry (PI-ReTOF-MS). Isotopically-labeled ices confirmed sublimation during the hot core phase, could be detected using the C2H3N assignments while photon energies of 8.81 eV, radio astronomy. 1. Introduction acetonitrile (CH3CN; 1) and methyl isocyanide (CH3NC; 2) ‘isomer doublet’ (Figure 2) – the methyl-substituted counterparts of For the last decade, the elucidation of the fundamental reaction hydrogen cyanide (HCN) and hydrogen isocyanide (HNC) – has pathways leading to structural isomers – molecules with the been detected toward the star-forming region SgrB2.[4,8–9] same molecular formula, but distinct connectivities of atoms – However, none of their higher energy isomers has ever been of complex organic molecules (COMs) in the interstellar identified in any astronomical environment: 2H-azirine (c- [10–14] [15–19] medium (ISM) has received considerable interest from the NCHCH2; 3), ethynamine (HCCNH2; 4), ketenimine [1–3] [20] [21] astrochemistry and physical chemistry communities. -
Theory and Technique
Lawrence Berkeley National Laboratory Lawrence Berkeley National Laboratory Title COMPUTATIONAL METHODS FOR MOLEUCLAR STRUCTURE DETERMINATION: THEORY AND TECHNIQUE Permalink https://escholarship.org/uc/item/3b7795px Author Lester, W.A. Publication Date 1980-03-14 Peer reviewed eScholarship.org Powered by the California Digital Library University of California CONTENTS Foreword v List of Invited Speakers vii Workshop Participants viii LECTURES 1 Introduction to Computational Quantum Chemistry Ernest R. Davidson 1-1 2/3 Introduction to SCF Theory Ernest R. Davidson 2/3-1 4 Semi-Empirical SCF Theory Michael C. Zerner 4-1 5 An Introduction to Some Semi-Empirical and Approximate Molecular Orbital Methods Miehael C. Zerner 5-1 6/7 Ab Initio Hartree Fock John A. Pople 6/7-1 8 SCF Properties Ernest R. Davidson 8-1 9/10 Generalized Valence Bond William A, Goddard, III 9/10-1 11 Open Shell KF and MCSCF Theory Ernest R. Davidson 11-1 12 Some Semi-Empirical Approaches to Electron Correlation Miahael C. Zerner 12-1 13 Configuration Interaction Method Ernest R. Davidson 13-1 14 Geometry Optimization of Large Systems Michael C. Zerner 14-1 15 MCSCF Calculations: Results Boaen Liu 15-1 lfi/18 Empirical Potentials, Semi-Empirical Potentials, and Molecular Mechanics Norman L. Allinger 16/18-1 iv 17 CI Calculations: Results Bowen Liu 17-1 19 Computational Quantum Chemistry: Future Outlook Ernest R. Davidson 19-1 V FOREWORD The National Resource for Computation in Chemistry (NRCC) was established as a Division of Lawrence Berkeley Laboratory (LBL) in October 1977. The functions of the NRCC may be broadly categorized as follows: (1) to make information on existing and developing computa tional methodologies available to all segments of the chemistry community, (2) to make state-of-the-art computational facilities (both hardware and software] accessible to the chemistry community, and (3) to foster research and development of new computational methods for application to chemical problems. -
Formation of Fulvene in the Reaction of C2H with 1,3-Butadiene
UC Berkeley UC Berkeley Previously Published Works Title Formation of fulvene in the reaction of C2H with 1,3-butadiene Permalink https://escholarship.org/uc/item/34x2s372 Authors Lockyear, JF Fournier, M Sims, IR et al. Publication Date 2015-02-15 DOI 10.1016/j.ijms.2014.08.025 Peer reviewed eScholarship.org Powered by the California Digital Library University of California International Journal of Mass Spectrometry 378 (2015) 232–245 Contents lists available at ScienceDirect International Journal of Mass Spectrometry journal homepage: www.elsevier.com/locate/ijms Formation of fulvene in the reaction of C2H with 1,3-butadiene Jessica F. Lockyear a,1, Martin Fournier b,c, Ian R. Sims b, Jean-Claude Guillemin c, Craig A. Taatjes d, David L. Osborn d, Stephen R. Leone a,* a Departments of Chemistry and Physics, University of California at Berkeley, and Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA b Institut de Physique de Rennes, UMR CNRS-UR1 6251, Université de Rennes 1, 263 Avenue du Général Leclerc, 35042 Rennes CEDEX,France c Ecole Nationale Supérieure de Chimie de Rennes, CNRS UMR 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes CEDEX 7, France d Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA 94551-0969, USA ARTICLE INFO ABSTRACT Article history: Products formed in the reaction of C2H radicals with 1,3-butadiene at 4 Torr and 298 K are probed using Received 30 May 2014 photoionization time-of-flight mass spectrometry. The reaction takes place in a slow-flow reactor, and Received in revised form 21 July 2014 products are ionized by tunable vacuum-ultraviolet light from the Advanced Light Source. -
Diagonalization, Eigenvalues Problem, Secular Equation
Diagonalization, eigenvalues problem, secular equation Diagonalization procedure of a matrix A with dimensionality n × n (e.g. the Hessian matrix) 2 3 a11 a12 : : : a1n 6 7 6 a21 a22 : : : a2n 7 6 7 A = 6 . 7 6 . 7 4 5 an1 an2 : : : ann consists in finding a matrix C such, that the matrix D=C−1AC is diagonal: 2 3 d1 0 ::: 0 6 7 6 0 d2 ::: 0 7 −1 6 7 C AC = D = 6 . 7 6 . 7 4 5 0 0 : : : dn Equation C−1AC=D can also be written as AC = CD Denoting the elements of matrix C by cij and using te fact that D is diagonal (i.e., its elements dij are of the form djδij, where δij denotes the Kronecker delta, δii=1 i δij=0 for i6=j) we obtain X X X (AC)ij = aik ckj (CD)ij = cik dkj = cik dj δkj = djcij k k k Diagonalization, eigenvalues problem, secular equation Employing the equation (AC)ij = (CD)ij we obtain X aik ckj = djcij k In matrix notation this equation takes the form ACj = dj Cj where Cj is the jth column of matrix C. This is equation for the eigenvalues (dj) and eigenvectors (Cj) of matrix A. Solving this equation, that is the solving the so called eigenproblem for matrix A, is equivalent to diagonalization of matrix A. This is because the matrix C is built from the (column) eigenvectors C1;C2;:::;Cn: C = [C1;C2;:::;Cn] The equation for eigenvectors can also be written as( A − dj E) Cj = 0, where E is the unit matrix with elements δij. -
A Comparison of Pariser-Parr-Pople Calculations on Furan with Nddo(+
University of New Hampshire University of New Hampshire Scholars' Repository Doctoral Dissertations Student Scholarship Fall 1975 A COMPARISON OF PARISER-PARR-POPLE CALCULATIONS ON FURAN WITH NDDO(+ NEGLECT OF DIATOMIC DIFFERENTIAL OVERLAP) CALCULATIONS ON FURAN AND PYRROLE INCLUDING A COMPARISON WITH AB INITIO AND OTHER SEMIEMPIRICAL METHODS DONALD RICHARD LAND University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/dissertation Recommended Citation LAND, DONALD RICHARD, "A COMPARISON OF PARISER-PARR-POPLE CALCULATIONS ON FURAN WITH NDDO(+ NEGLECT OF DIATOMIC DIFFERENTIAL OVERLAP) CALCULATIONS ON FURAN AND PYRROLE INCLUDING A COMPARISON WITH AB INITIO AND OTHER SEMIEMPIRICAL METHODS" (1975). Doctoral Dissertations. 2349. https://scholars.unh.edu/dissertation/2349 This Dissertation is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. INFORMATION TO USERS This material was produced from a microfilm copy of the original document. While the most advanced technological means to photograph and reproduce this document have been used, the quality is heavily dependent upon the quality of the original submitted. The following explanation of techniques is provided to help you understand markings or patterns which may appear on this reproduction. 1.The sign or "target” for pages apparently lacking from the document photographed is "Missing Page(s)”. If it was possible to obtain the missing page(s) or section, they are spliced into the film along with adjacent pages. -
Reaction of Allyl Radical with Acetylene
石 油 学 会 誌 J. Japan Petrol. Inst., 23, (2), 133-138 (1980) 133 Reaction of Allyl Radical with Acetylene Daisuke NOHARA* and Tomoya SAKAI* The title reaction was performed at 580-740℃, employing biallyl as the source of the allyl radical. The main product of addition of allyl radical to acetylene was cyclopentadiene, and the selectivity attained was more than 90 percent of the total C5 products. Such acyclic product as 1,4-pentadiene was scarcely formed in distinct contrast with the result of the addition of allyl radical to ethylene, in which almost equal amounts of 1-pentene and cyclopentene were formed. The product distribution of the title reaction was reported, and a scheme for the product forma- tion was proposed. From the kinetic analysis, the overall activation energy of reaction for the formation of cyclopentadiene from allyl radical and acetylene was estimated. The present experiment on thermal reaction of 1. Introduction biallyl with acetylene was undertaken to examine Allyl radical has been suggested as playing the the possibility of cycloaddition of allyl radical to role of diene1) in the cyclization reaction with the triple bond. Cyclopentadiene, one of the ex- olefins to form C5-cyclic products analogous to pected C5 compounds in the present reaction, was butadiene which thermally combines with olefins formed in high selectivity, i.e., ca. 40 percent of to yield C6-cyclic compounds. In the pyrolysis all products, including the products from the thermal of ethylene2), C6-cyclic compounds were formed reaction of acetylene itself. The selectivity was mostly through the Diels-Alder reaction between formed to be as high as 60 percent, excluding the butadiene and ethylene, the butadiene being one products from the reaction of acetylene itself. -
Microhydration and the Enhanced Acidity of Free Radicals
molecules Article Microhydration and the Enhanced Acidity of Free Radicals John C. Walton EaStCHEM School of Chemistry, University of St. Andrews, St. Andrews KY16 9ST, UK; [email protected]; Tel.: +44-(0)1334-463864 Received: 31 January 2018; Accepted: 14 February 2018; Published: 14 February 2018 Abstract: Recent theoretical research employing a continuum solvent model predicted that radical centers would enhance the acidity (RED-shift) of certain proton-donor molecules. Microhydration studies employing a DFT method are reported here with the aim of establishing the effect of the solvent micro-structure on the acidity of radicals with and without RED-shifts. Microhydration cluster structures were obtained for carboxyl, carboxy-ethynyl, carboxy-methyl, and hydroperoxyl radicals. The numbers of water molecules needed to induce spontaneous ionization were determined. The hydration clusters formed primarily round the CO2 units of the carboxylate-containing radicals. Only 4 or 5 water molecules were needed to induce ionization of carboxyl and carboxy-ethynyl radicals, thus corroborating their large RED-shifts. Keywords: free radicals; acidity; DFT computations; hydration 1. Introduction A transient-free radical is necessarily reactive at the site (X) of its unpaired electron (upe). In addition, a free radical with a structure containing a proton donor group may undergo ionic dissociation to a radical anion and a proton: • • − + XH2WAH! XH2WA + H in which W is a connector or spacer group, and A is the site of the departing proton. Effectively, the free radicals in this category can function as Br'nsted acids. More than 40 years ago, Hayon and Simic drew attention to the fact that free radicals could be more acidic than parent compounds [1]. -
Chemical Dynamics of Triacetylene Formation and Implications to the Synthesis of Polyynes in Titan’S Atmosphere
Chemical dynamics of triacetylene formation and implications to the synthesis of polyynes in Titan’s atmosphere X. Gua,Y.S.Kima, R. I. Kaisera,1, A. M. Mebelb, M. C. Liangc,d,e, and Y. L. Yungf aDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822; bDepartment of Chemistry and Biochemistry, Florida International University, Miami, FL 33199 ; cResearch Center for Environmental Changes, Academia Sinica, Taipei 115, Taiwan; dGraduate Institute of Astronomy, National Central University, Jhongli 320, Taiwan; eInstitute of Astronomy and Astrophysics, Academia Sinica, Taipei 10617, Taiwan; and fDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125 Edited by William Klemperer, Harvard University, Cambridge, MA, and approved August 12, 2009 (received for review January 16, 2009) For the last four decades, the role of polyynes such as diacetylene Therefore, an experimental investigation of these elementary (HCCCCH) and triacetylene (HCCCCCCH) in the chemical evolution reactions under single collision conditions is desirable (16–18). of the atmosphere of Saturn’s moon Titan has been a subject of In this article, we report the results of a crossed molecular vigorous research. These polyacetylenes are thought to serve as an beam reaction of the isotope variant of the elementary reaction 2⌺ϩ 1⌺ϩ UV radiation shield in planetary environments; thus, acting as of ethynyl radicals (C2H; X ) with diacetylene (C4H2;X g ). prebiotic ozone, and are considered as important constituents of These results are combined with electronic structure calculations the visible haze layers on Titan. However, the underlying chemical and photochemical modeling to unravel the formation and role 1⌺ϩ processes that initiate the formation and control the growth of of the organic transient molecule triacetylene (C6H2;X g )in polyynes have been the least understood to date. -
The 1.66M Spectrum of the Ethynyl Radical
The 1.66 µm Spectrum of the Ethynyl Radical, CCH Eisen C. Gross Chemistry Department, Stony Brook University, Stony Brook, NY 11794-3400 Anh. T. Le School of Molecular Sciences, Arizona State University, Tempe, AZ 85287 Gregory E. Hall Chemistry Division, Brookhaven National Laboratory, Upton, NY 11973-5000 Trevor J. Sears∗ Chemistry Department, Stony Brook University, Stony Brook, NY 11794-3400 Abstract Frequency-modulated diode laser transient absorption spectra of the ethynyl radical have been recorded at wavelengths close to 1.66 µm. The observed spectrum includes strong, regular, line patterns. The two main bands observed originate in the ground X~ 2Σ+state and its first excited bending vibrational level of 2Π symmetry. The upper states, of 2Σ+ symmetry at 6055.6 cm−1and 2Π symmetry at 6413.5 cm−1 , respectively, had not previously been observed and the data were analyzed in terms of an effective Hamiltonian representing their rotational and fine structure levels to derive parameters which can be used to calculate rotational levels up to J = 37/2 for the 2Π level and J = 29/2 for the 2Σ one. Additionally, a weaker series of lines have been assigned to absorption from the second excited bending, (020), level of 2Σ symmetry, to a previously observed state of 2Π symmetry near 6819 cm−1 . These strong absorption bands at convenient near-IR laser wavelengths will be useful for arXiv:2011.08995v1 [physics.chem-ph] 17 Nov 2020 ∗Corresponding author Email addresses: [email protected] (Eisen C. Gross), [email protected] (Anh. T. Le), [email protected] (Gregory E. -
Chemical Production Rates of Intermediate Hydrocarbons in a Methane/Air Diffusion Flame
Twenty-first Symposium(International) on Combustion/TheCombustion Institute, 1986/pp. 1057-1065 CHEMICAL PRODUCTION RATES OF INTERMEDIATE HYDROCARBONS IN A METHANE/AIR DIFFUSION FLAME J. HOUSTON MILLER Department of Chemistry George Washington University Washington, DC 20052 W. GARY MALLARD AND KERMIT C. SMYTH Center for Fire Research National Bureau of Standards Gaithersburg, MD 20899 The net production and destruction rates for acetylene, diacetylene, butadiene, and benzene have been determined from measurements of species concentration, temperature, and velocity in a methane/air diffusion flame. In addition, profile measurements of the methyl radical are used to compute profiles of hydrogen atoms. These results provide an initial evaluation of proposed models of hydrocarbon chemical growth routes in diffusion flames, and indicate that the vinyl radical plays a key role in the formation of benzene. Evidence is also presented for acetylene participation in surface growth processes on small soot particles. I. Introduction composition is not sufficient to predict the concentrations of intermediate hydrocarbons, The identification of the formation mecha- such as acetylene and benzene, and soot nism of large hydrocarbons produced during particles 17. Therefore, in this paper an analysis combustion is one of the most challenging is undertaken combining detailed species pro- problems in high temperature chemistry. De- file measurements, temperature, and convec- spite the complexity of chemical growth reac- tive velocity measurements to calculate produc- tions in flames, there have been significant tion and destruction rates for intermediate recent gains in our understanding. Extensive hydrocarbons. The experimental values for the profile measurements have led to a detailed net production/destruction rates are compared description of the chemical structure of pre- with estimated rates of chemical growth reac- mixed flames 1-13. -
Arxiv:1510.07052V1 [Astro-Ph.EP] 23 Oct 2015 99 Lae Ta.20,Adrfrne Therein)
A Chemical Kinetics Network for Lightning and Life in Planetary Atmospheres P. B. Rimmer1 and Ch Helling School of Physics and Astronomy, University of St Andrews, St Andrews, KY16 9SS, United Kingdom ABSTRACT There are many open questions about prebiotic chemistry in both planetary and exoplane- tary environments. The increasing number of known exoplanets and other ultra-cool, substellar objects has propelled the desire to detect life and prebiotic chemistry outside the solar system. We present an ion-neutral chemical network constructed from scratch, Stand2015, that treats hydrogen, nitrogen, carbon and oxygen chemistry accurately within a temperature range between 100 K and 30000 K. Formation pathways for glycine and other organic molecules are included. The network is complete up to H6C2N2O3. Stand2015 is successfully tested against atmo- spheric chemistry models for HD209458b, Jupiter and the present-day Earth using a simple 1D photochemistry/diffusion code. Our results for the early Earth agree with those of Kasting (1993) for CO2, H2, CO and O2, but do not agree for water and atomic oxygen. We use the network to simulate an experiment where varied chemical initial conditions are irradiated by UV light. The result from our simulation is that more glycine is produced when more ammonia and methane is present. Very little glycine is produced in the absence of any molecular nitrogen and oxygen. This suggests that production of glycine is inhibited if a gas is too strongly reducing. Possible applications and limitations of the chemical kinetics network are also discussed. Subject headings: astrobiology — atmospheric effects — molecular processes — planetary systems 1. Introduction The input energy source and the initial chem- istry have been varied across these different ex- The potential connection between a focused periments.