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Method and System for Terpene Production Platforms in Yeast

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Method and System for Terpene Production Platforms in Yeast University of Kentucky UKnowledge Pharmaceutical Sciences Faculty Patents Pharmaceutical Sciences 8-11-2020 Method and System for Terpene Production Platforms in Yeast Joseph Chappell University of Kentucky, [email protected] Xun Zhuang University of Kentucky Shuiqin Wu University of Kentucky Follow this and additional works at: https://uknowledge.uky.edu/ps_patents Part of the Pharmacy and Pharmaceutical Sciences Commons Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Chappell, Joseph; Zhuang, Xun; and Wu, Shuiqin, "Method and System for Terpene Production Platforms in Yeast" (2020). Pharmaceutical Sciences Faculty Patents. 193. https://uknowledge.uky.edu/ps_patents/193 This Patent is brought to you for free and open access by the Pharmaceutical Sciences at UKnowledge. It has been accepted for inclusion in Pharmaceutical Sciences Faculty Patents by an authorized administrator of UKnowledge. For more information, please contact [email protected]. I 1111111111111111 1111111111 1111111111 lllll 111111111111111 1111111111 11111111 US010738328Bl c12) United States Patent (10) Patent No.: US 10,738,328 Bl Chappell et al. (45) Date of Patent: * Aug. 11, 2020 (54) METHOD AND SYSTEM FOR TERPENE Asadollahi et al. 2008 (Production of Plant Sesquiterpenes in PRODUCTION PLATFORMS IN YEAST Saccharomyces cerevisiae: Effect ofERG9 Repression on Sesquiterpene Biosynthesis; Biotechnology and Bioengineering 99(3): 666-677).* (71) Applicant: University of Kentucky Research Tarshis et al. 1994 (Crystal Structure of Recombinant Farnesyl Diphosphate Synthase at 2.6 A Resolution; Biochemistry 33: 10871- Foundation, Lexington, KY (US) 10877). * Genetic Nomenclature Guide. 1998. SGD (Saccharomyces Genome (72) Inventors: Joe Chappell, Lexington, KY (US); Database) http://genome-www.stanford.edu/Saccharomyces/. * Xun Zhuang, Lexington, KY (US); Wu Takahashi et al. 2007 (Biotechnology and Bioengineering; 97( 1): 170- Shuiqin, San Diego, CA (US) 181 ). * Kayscek et al. 2015 (Yeast as a cell factory: current state and perspectives; Microbial Cell Factories 14:94). (Year: 2015).* (73) Assignee: UNIVERSITY OF KENTUCKY Kim, Tae-Dong, et al., "Expression and Functional Characterization RESEARCH FOUNDATION, of Three Squalene Synthase Genes Associated with Saponin Bio­ Lexington, KY (US) synthesis in Panas ginseng", Plant Cell Physiol., (2010) 52(1): 125-137. ( *) Notice: Subject to any disclaimer, the term ofthis Asadollahi MA, Maury J, Moller K, Nielsen KF, Schalk M, Clark patent is extended or adjusted under 35 A, Nielsen J (2008) Production of plant sesquiterpenes in Sac­ U.S.C. 154(b) by O days. charomyces cerevisiae: Effect of ERG9 repression on sesquiterpene biosynthesis. Biotechnology and Bioengineering 99: 666-677. This patent is subject to a terminal dis­ Asadollahi MA, Maury J, Schalk M, Clark A, Nielsen J (2010) claimer. Enhancement of farnesyl diphosphate pool as direct precursor of sesquiterpenes through metabolic engineering of the mevalonate pathway in Saccharomyces cerevisiae. Biotechnology and Bioen­ (21) Appl. No.: 14/092,496 gineering 106: 86-96. Bedoukian PE (1983) Perfumery and flavour materials. Perfumer & (22) Filed: Nov. 27, 2013 Flavorist 8: 1, 3-6. Bergstrom JD, Dufresne C, Bills GF, Nallinomstead M, Byrne K Related U.S. Application Data (1995) Discovery, biosynthesis, and mechanism of action of the (60) Provisional application No. 61/730,412, filed on Nov. zaragozic acids ~potent inhibitors of squalene synthase. Annual 27, 2012. Review of Microbiology 49: 607-639. Bourot S, Karst F (1995) Isolation and characterization of the saccharomycescerevisiae sutl gene involved in sterol uptake. Gene (51) Int. Cl. 165: 97-102 Buckingham J (2003) Dictionary of Natural Products. C12P 5100 (2006.01) Chapman & Hall/CRC Chemical Database. (52) U.S. Cl. Bhilwade HN, Tatewaki N, Nishida H, Konishi T (2010) Squalene CPC .................................... C12P 51007 (2013.01) as novel food factor. Current Pharmaceutical Biotechnology 11: ( 58) Field of Classification Search 875-880. None Casida JE (2009) Pest toxicology: the primary mechanisms of See application file for complete search history. pesticide action. Chemical Research in Toxicology 22: 609-619. Fischer MJC, Meyer S, Claude! P, Bergdoll M, Karst F (2011) Metabolic engineering of monoterpene synthesis in yeast. Biotech­ (56) References Cited nology and Bioengineering 108: 1883-1892. Huang Z-R, Lin Y-K, Fang J-Y (2009) Biological and pharmaco­ U.S. PATENT DOCUMENTS logical activities of squalene and related compounds: potential uses in cosmetic dermatology. Molecules 14: 540-554. 6,531,303 Bl 3/2003 Millis et al. 6,689,593 B2 * 2/2004 Millis ................... C07C 403/08 Janke C, Magiera MM, Rathfelder N, Taxis C, Reber 5, Maekawa 435/155 H, Moreno-BorchartA, Doenges G, Schwob E, Schiebel E, Knop M 6,828,092 Bl 12/2004 Dixon et al. (2004) A versatile toolbox for PCR-based tagging of yeast genes: 7,172,886 B2 2/2007 Keasling et al. new fluorescent proteins, more markers and promoter substitution 7,927,862 B2 4/2011 Millis et al. cassettes. Yeast 21: 947-962. 7,985,567 B2 7/2011 Chou et al. (Continued) 8,114,645 B2 2/2012 Pitera et al. 2004/0072323 Al 4/2004 Matsuda et al. 2007/0015237 Al 1/2007 Bailey et al. Primary Examiner - Mary Maille Lyons 2008/0020438 Al 1/2008 Matsuda et al. (74) Attorney, Agent, or Firm - Stephen J. Weyer, Esq.; 2009/0324800 Al 12/2009 Bailey et al. Stites & Harbison, PLLC 2011/0021843 Al 1/2011 Bailey et al. 2011/0039299 Al 2/2011 Bailey et al. (57) ABSTRACT 2012/0149886 Al 6/2012 Bailey et al. A method is provided for producing modified mutant yeast OTHER PUBLICATIONS and the resulting yeast that can be used as a platform for terpene production. The method includes chemical muta­ Grabowska et al. 1998 (Effect of squalene synthase gene disruption genesis to effect ergosterol dependent growth in yeast. on synthesis of polyprenols in Saccharomyces cerevisiae; FEBS Subsequently, these yeast are subjected to an erg9 knockout Letters 434:466-408). * mutation to thereby produce ergosterol dependent growth/ Takahashi et al. 2007 (Metabolic Engineering of Sesquiterpene erg9 knockout mutation yeast cell lines. The resulting yeast Metabolism in Yeast; Biotechnology and Bioengineering; 97( 1): 170- are well suited for use in the production of terpenes. 181 ). * Kennedy et al. 1999 (Transcriptional regulation of the squalene 14 Claims, 15 Drawing Sheets synthase gene (ERG9) in the yeast Saccharomyces cerev1s1ae; Biochimica et Biophysica Acta 1445:110-122).* Specification includes a Sequence Listing. US 10,738,328 Bl Page 2 (56) References Cited of the triterpene sweetener glycyrrhizin. Proceedings of the National Academy of Sciences of the United States of America 105: 14204- 14209. OTHER PUBLICATIONS Shianna KV, Dotson WD, Tove S, Parks LW (2001) Identification Keasling J (2009) Synthetic biology in pursuit of inexpensive, of a UPC2 homolog in Saccharomyces cerevisiae and its involve­ effective, anti ~malarial drugs. Bio societies 4: 275-282. ment in aerobic sterol uptake. Journal of Bacteriology 183: 830-834. Kirby J, Romanini DW, Paradise EM, Keasling JD (2008) Engi­ Silva L, Coutinho A, Fedorov A, Prieto M (2006) Competitive neering triterpene production in Saccharomyces cerevisiae-beta­ binding of cholesterol and ergosterol to the polyene antibiotic amyrin synthase from Artemisia annua. Febs Journal 275: 1852- nystatin. A fluorescence study. Biophysical Journal 90: 3625-3631. 1859. Takahashi S, Yeo Y, Greenhagen BT, McMullin T, Song L, Maurina­ Maertens JA (2004) History of the development of azole deriva­ Brunker J, Rosson R, Noel JP, Chappell J (2007) Metabolic engi­ tives. Clinical Microbiology and Infection 10: 1-10. neering of sesquiterpene metabolism in yeast. Biotechnology and Martin VJJ, Pitera DJ, Withers ST, Newman JD, Keasling JD (2003) Bioengineering 97: 170-181. Engineering a mevalonate pathway in Escherichia coli for produc­ Tu Y (2011) The discovery of artemisinin ( qinghaosu) and gifts tion of terpenoids. Nature Biotechnology 21: 796-802. from Chinese medicine. Nature Medicine 17: 1217-1220. Mathis JR, Back K, Starks C, Noel J, Poulter CD, Chappell J (1997) Wall ME, Wani MC ( 1995) Paclitaxel-from discovery to clinic. IN Pre-steady-state study of recombinant sesquiterpene cyclases. Bio­ GICTTOIVDM Georg, ed, Taxane Anticancer Agents: Basic Sci­ chemistry 36: 8340-8348. ence and Current Status, vol. 583, pp. 18-30. Nicolaou KC, Yang Z, Liu JJ, Ueno H, Nantermet PG, Guy RK, Wu SQ, Schalk M, Clark A, Miles RB, Coates R, Chappell J (2006) Claiborne CF, Renaud J, Couladouros EA, Paulvannan K, Sorensen Redirection of cytosolic or plastidic isoprenoid precursors elevates EJ (1994) Total synthesis of taxol. Nature 367: 630-634. terpene production in plants. Nature Biotechnology 24: 1441-1447. Reddy LH, Couvreur P (2009) Squalene: A natural triterpene for use Zhang DL, Jennings SM, Robinson GW, Poulter CD (1993) Yeast in disease management and therapy. Advanced Drug Delivery squalene synthase----expression, purification, and characterization of Reviews 61: 1412~1426. soluble recombinant enzyme. Archives of Biochemistry and Bio­ Seki H, Ohyama K, Sawal S, Mizutani M, Ohnishi T, Sudo H, physics 304: 133~ 143. Akashi T, Aoki T, Saito K, Muranaka T (2008) Licorice beta-amyrin 11-oxidase, a cytochrome P450 with a key role in the biosynthesis * cited by examiner U.S. Patent Aug. 11, 2020 Sheet 1 of 15 US 10,738,328 Bl 9 l 1 T ........ U.S. Patent Aug. 11, 2020 Sheet 2 of 15 US 10,738,328 Bl MVAP.-rt.hway Essential oHs ~:;:;::::.·-:- .:::;: Taxo! (pacmaxen - Figure 2 e• 00 • ~ ~ ~ ~ <-"OH ._OH =~ O Fl?GJ•l O O rRr::·; O O m.:!GJ o -- . ~--·• ~-/!' A.~ II II _________.. II ,_JH II ]-lt,lG:'.► ~---·""OH j~ OP~ OPPER(il9-~ OP • ., _ .,u~ ~Sc"•' - o" HO~ S-CoA H( COOH COOH p n.cet\· l-l.ot\ L\c·~to·i ·... •ctv! ., -._r•• L1 A 3~h:vd.n)xy¥3¥glut,,:ryJ~Co_,_:\ . 01-l > , :.. ., _ , , : lsoperuenyl ~ ~ •l·"l(' <" , , Mevalomc acict l ho.,p .. omc,alond,e D,phosphomevalonatc ... _ , _ , _!· \ .. ~ ,- .. Oh) \ (rVJVP) _ "'\. _ l,-\>f\..)fJJlOSfJJld c; (MYA)1 · ,.
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