Targeting Cellular Trafficking of Fibroblast Growth Factor Receptors
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Targeted Genes and Methodology Details for Neuromuscular Genetic Panels
Targeted Genes and Methodology Details for Neuromuscular Genetic Panels Reference transcripts based on build GRCh37 (hg19) interrogated by Neuromuscular Genetic Panels Next-generation sequencing (NGS) and/or Sanger sequencing is performed Motor Neuron Disease Panel to test for the presence of a mutation in these genes. Gene GenBank Accession Number Regions of homology, high GC-rich content, and repetitive sequences may ALS2 NM_020919 not provide accurate sequence. Therefore, all reported alterations detected ANG NM_001145 by NGS are confirmed by an independent reference method based on laboratory developed criteria. However, this does not rule out the possibility CHMP2B NM_014043 of a false-negative result in these regions. ERBB4 NM_005235 Sanger sequencing is used to confirm alterations detected by NGS when FIG4 NM_014845 appropriate.(Unpublished Mayo method) FUS NM_004960 HNRNPA1 NM_031157 OPTN NM_021980 PFN1 NM_005022 SETX NM_015046 SIGMAR1 NM_005866 SOD1 NM_000454 SQSTM1 NM_003900 TARDBP NM_007375 UBQLN2 NM_013444 VAPB NM_004738 VCP NM_007126 ©2018 Mayo Foundation for Medical Education and Research Page 1 of 14 MC4091-83rev1018 Muscular Dystrophy Panel Muscular Dystrophy Panel Gene GenBank Accession Number Gene GenBank Accession Number ACTA1 NM_001100 LMNA NM_170707 ANO5 NM_213599 LPIN1 NM_145693 B3GALNT2 NM_152490 MATR3 NM_199189 B4GAT1 NM_006876 MYH2 NM_017534 BAG3 NM_004281 MYH7 NM_000257 BIN1 NM_139343 MYOT NM_006790 BVES NM_007073 NEB NM_004543 CAPN3 NM_000070 PLEC NM_000445 CAV3 NM_033337 POMGNT1 NM_017739 CAVIN1 NM_012232 POMGNT2 -
ARTICLES Fibroblast Growth Factors 1, 2, 17, and 19 Are The
0031-3998/07/6103-0267 PEDIATRIC RESEARCH Vol. 61, No. 3, 2007 Copyright © 2007 International Pediatric Research Foundation, Inc. Printed in U.S.A. ARTICLES Fibroblast Growth Factors 1, 2, 17, and 19 Are the Predominant FGF Ligands Expressed in Human Fetal Growth Plate Cartilage PAVEL KREJCI, DEBORAH KRAKOW, PERTCHOUI B. MEKIKIAN, AND WILLIAM R. WILCOX Medical Genetics Institute [P.K., D.K., P.B.M., W.R.W.], Cedars-Sinai Medical Center, Los Angeles, California 90048; Department of Obstetrics and Gynecology [D.K.] and Department of Pediatrics [W.R.W.], UCLA School of Medicine, Los Angeles, California 90095 ABSTRACT: Fibroblast growth factors (FGF) regulate bone growth, (G380R) or TD (K650E) mutations (4–6). When expressed at but their expression in human cartilage is unclear. Here, we deter- physiologic levels, FGFR3-G380R required, like its wild-type mined the expression of entire FGF family in human fetal growth counterpart, ligand for activation (7). Similarly, in vitro cul- plate cartilage. Using reverse transcriptase PCR, the transcripts for tivated human TD chondrocytes as well as chondrocytes FGF1, 2, 5, 8–14, 16–19, and 21 were found. However, only FGF1, isolated from Fgfr3-K644M mice had an identical time course 2, 17, and 19 were detectable at the protein level. By immunohisto- of Fgfr3 activation compared with wild-type chondrocytes and chemistry, FGF17 and 19 were uniformly expressed within the showed no receptor activation in the absence of ligand (8,9). growth plate. In contrast, FGF1 was found only in proliferating and hypertrophic chondrocytes whereas FGF2 localized predominantly to Despite the importance of the FGF ligand for activation of the resting and proliferating cartilage. -
FGF14 Regulates Presynaptic Ca2+ Channels and Synaptic Transmission
Cell Reports Article FGF14 Regulates Presynaptic Ca2+ Channels and Synaptic Transmission Haidun Yan,1,3 Juan L. Pablo,2,3 and Geoffrey S. Pitt1,2,3,* 1Division of Cardiology, Department of Medicine, Duke University Medical Center, Durham, NC 27710, USA 2Department of Neurobiology, Duke University Medical Center, Durham, NC 27710, USA 3Ion Channel Research Unit, Duke University Medical Center, Durham, NC 27710, USA *Correspondence: [email protected] http://dx.doi.org/10.1016/j.celrep.2013.06.012 This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial-No Derivative Works License, which permits non-commercial use, distribution, and reproduction in any medium, provided the original author and source are credited. SUMMARY data pinpointed FGF14 as the locus for spinocerebellar ataxia 27 (SCA27). Fibroblast growth factor homologous factors (FHFs) Focus on FHF regulation of neuronal excitability began when are not growth factors, but instead bind to voltage- Fgf14–/– mice showed ataxia (Wang et al., 2002), providing + gated Na channels (NaV) and regulate their function. a basis for exploring the implications of a linkage analysis that Mutations in FGF14, an FHF that is the locus for identified a F150S missense mutation in a ‘‘b’’ splice variant of F150S F145S spinocerebellar ataxia 27 (SCA27), are believed to FGF14 (FGF14b ; termed FGF14 in some studies that be pathogenic because of a dominant-negative used numbering based on the alternatively spliced FGF14a variant) as the etiology of the autosomal-dominant SCA27 in reduction of Na currents in cerebellar granule cells. V an extended Dutch family (van Swieten et al., 2003). -
Fibroblast Growth Factor 12 Is Expressed in Spiral and Vestibular
www.nature.com/scientificreports OPEN Fibroblast growth factor 12 is expressed in spiral and vestibular ganglia and necessary for auditory Received: 5 February 2018 Accepted: 26 June 2018 and equilibrium function Published: xx xx xxxx Yukiko Hanada1,2, Yukiko Nakamura1, Yoshiyuki Ozono2, Yusuke Ishida1,3, Yasumitsu Takimoto1,2,4, Manabu Taniguchi5, Kazuya Ohata1,2, Yoshihisa Koyama1, Takao Imai2, Tetsuo Morihana2,6, Makoto Kondo1, Takashi Sato2, Hidenori Inohara2 & Shoichi Shimada1 We investigated fbroblast growth factor 12 (FGF12) as a transcript enriched in the inner ear by searching published cDNA library databases. FGF12 is a fbroblast growth factor homologous factor, a subset of the FGF superfamily. To date, its localisation and function in the inner ear have not been determined. Here, we show that FGF12 mRNA is localised in spiral ganglion neurons (SGNs) and the vestibular ganglion. We also show that FGF12 protein is localised in SGNs, the vestibular ganglion, and nerve fbres extending beneath hair cells. Moreover, we investigated FGF12 function in auditory and vestibular systems using Fgf12-knockout (FGF12-KO) mice generated with CRISPR/Cas9 technology. Our results show that the inner ear morphology of FGF12-KO mice is not signifcantly diferent compared with wild-type mice. However, FGF12-KO mice exhibited an increased hearing threshold, as measured by the auditory brainstem response, as well as defcits in rotarod and balance beam performance tests. These results suggest that FGF12 is necessary for normal auditory and equilibrium function. Hearing loss is a common problem in people of all ages. Te World Health Organization reports that 360 million people worldwide have hearing loss, with 32 million being children1. -
Ectodysplasin Target Gene Fgf20 Regulates Mammary Bud Growth and Ductal Invasion and Branching During Puberty
View metadata, citation and similar papersbroughtCORE at to core.ac.uk you by provided by Institute of Cancer Research Repository Ectodysplasin target gene Fgf20 regulates mammary bud growth and ductal invasion and branching during puberty Teresa Elo1,#, Päivi H. Lindfors1,#, Qiang Lan1 , Maria Voutilainen1, Ewelina Trela1, Claes Ohlsson2, Sung-Ho Huh3,^, David M. Ornitz3, Matti Poutanen4, Beatrice A. Howard5, Marja L. Mikkola1,* 1 Developmental Biology Program, Institute of Biotechnology, University of Helsinki, Finland 2 Center for Bone and Arthritis Research, Department of Internal Medicine, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Sweden 3 Department of Developmental Biology, Washington University School of Medicine, St. Louis, Missouri, USA 4 Department of Physiology and Turku Center for Disease Modeling, Institute of Biomedicine, University of Turku, Turku, Finland 5 The Breast Cancer Now Toby Robins Research Centre, Division of Breast Cancer, the Institute of Cancer Research, London, United Kingdom #) these authors contributed equally ^) current address: Holland Regenerative Medicine Program and Department of Developmental Neuroscience, Munroe-Meyer Institute, University of Nebraska Medical Center, Omaha, Nebraska, USA *) Author for correspondence: Marja L. Mikkola Developmental Biology Program Institute of Biotechnology University of Helsinki P.O.B. 56 00014 Helsinki Finland e-mail: [email protected] phone: +358-2-941 59344 fax: +358-2-941 59366 1 Abstract Mammary gland development begins with the appearance of epithelial placodes that invaginate, sprout, and branch to form small arborized trees by birth. The second phase of ductal growth and branching is driven by the highly invasive structures called terminal end buds (TEBs) that form at ductal tips at the onset of puberty. -
FGF Signaling Network in the Gastrointestinal Tract (Review)
163-168 1/6/06 16:12 Page 163 INTERNATIONAL JOURNAL OF ONCOLOGY 29: 163-168, 2006 163 FGF signaling network in the gastrointestinal tract (Review) MASUKO KATOH1 and MASARU KATOH2 1M&M Medical BioInformatics, Hongo 113-0033; 2Genetics and Cell Biology Section, National Cancer Center Research Institute, Tokyo 104-0045, Japan Received March 29, 2006; Accepted May 2, 2006 Abstract. Fibroblast growth factor (FGF) signals are trans- Contents duced through FGF receptors (FGFRs) and FRS2/FRS3- SHP2 (PTPN11)-GRB2 docking protein complex to SOS- 1. Introduction RAS-RAF-MAPKK-MAPK signaling cascade and GAB1/ 2. FGF family GAB2-PI3K-PDK-AKT/aPKC signaling cascade. The RAS~ 3. Regulation of FGF signaling by WNT MAPK signaling cascade is implicated in cell growth and 4. FGF signaling network in the stomach differentiation, the PI3K~AKT signaling cascade in cell 5. FGF signaling network in the colon survival and cell fate determination, and the PI3K~aPKC 6. Clinical application of FGF signaling cascade in cell polarity control. FGF18, FGF20 and 7. Clinical application of FGF signaling inhibitors SPRY4 are potent targets of the canonical WNT signaling 8. Perspectives pathway in the gastrointestinal tract. SPRY4 is the FGF signaling inhibitor functioning as negative feedback apparatus for the WNT/FGF-dependent epithelial proliferation. 1. Introduction Recombinant FGF7 and FGF20 proteins are applicable for treatment of chemotherapy/radiation-induced mucosal injury, Fibroblast growth factor (FGF) family proteins play key roles while recombinant FGF2 protein and FGF4 expression vector in growth and survival of stem cells during embryogenesis, are applicable for therapeutic angiogenesis. Helicobacter tissues regeneration, and carcinogenesis (1-4). -
Mapping Protein Interactions of Sodium Channel Nav1.7 Using 2 Epitope-Tagged Gene Targeted Mice
bioRxiv preprint doi: https://doi.org/10.1101/118497; this version posted March 20, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Mapping protein interactions of sodium channel NaV1.7 using 2 epitope-tagged gene targeted mice 3 Alexandros H. Kanellopoulos1†, Jennifer Koenig1, Honglei Huang2, Martina Pyrski3, 4 Queensta Millet1, Stephane Lolignier1, Toru Morohashi1, Samuel J. Gossage1, Maude 5 Jay1, John Linley1, Georgios Baskozos4, Benedikt Kessler2, James J. Cox1, Frank 6 Zufall3, John N. Wood1* and Jing Zhao1†** 7 1Molecular Nociception Group, WIBR, University College London, Gower Street, 8 London WC1E 6BT, UK. 9 2Mass Spectrometry Laboratory, Target Discovery Institute, University of Oxford, The 10 Old Road Campus, Oxford, OX3 7FZ, UK. 11 3Center for Integrative Physiology and Molecular Medicine, Saarland University, 12 Kirrbergerstrasse, Bldg. 48, 66421 Homburg, Germany. 13 4Division of Bioscience, University College London, Gower Street, London WC1E 6BT, UK.14 15 †These authors contributed equally to directing this work. 16 *Correspondence author. Tel: +44 207 6796 954; E-mail: [email protected] 17 **Corresponding author: Tel: +44 207 6790 959; E-mail: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/118497; this version posted March 20, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 18 Abstract 19 The voltage-gated sodium channel NaV1.7 plays a critical role in pain pathways. 20 Besides action potential propagation, NaV1.7 regulates neurotransmitter release, 21 integrates depolarizing inputs over long periods and regulates transcription. -
Targeting Fibroblast Growth Factor Pathways in Endometrial Cancer
Curr Probl Cancer 41 (2017) 37–47 Contents lists available at ScienceDirect Curr Probl Cancer journal homepage: www.elsevier.com/locate/cpcancer Targeting fibroblast growth factor pathways in endometrial cancer Boris Winterhoff, MDa, Gottfried E. Konecny, MDb,* article info abstract Novel treatments that improve outcomes for patients with Keywords: recurrent or metastatic endometrial cancer (EC) remain an Endometrial cancer unmet need. Aberrant signaling by fibroblast growth factors Fibroblast growth factor (FGFs) and FGF receptors (FGFRs) has been implicated in Angiogenesis several human cancers. Activating mutations in FGFR2 have been found in up to 16% of ECs, suggesting an opportunity for targeted therapy. This review summarizes the role of the FGF pathway in angiogenesis and EC, and provides an overview of FGFR-targeted therapies under clinical develop- ment for the treatment of EC. & 2017 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). Introduction Endometrial cancer (EC) is the most common gynecologic cancer, with 54,870 new cases and 10,170 related deaths estimated for the United States in 2015.1 Localized disease is often curable with surgery and the 5-year relative survival rate for patients diagnosed with early-stage EC is high.1-3 However, for patients who present with metastatic disease or experience a recurrence, prognosis is poor.1-3 Response of metastatic EC to standard therapies (eg, adjuvant radiotherapy, brachytherapy, or chemotherapy) is limited and overall survival for most patients with recurrent or metastatic disease is r1year.2-4 Thus, novel treatment options for this disease remain an unmet need. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
The FGF/FGFR System in Breast Cancer: Oncogenic Features and Therapeutic Perspectives
cancers Review The FGF/FGFR System in Breast Cancer: Oncogenic Features and Therapeutic Perspectives Maria Francesca Santolla and Marcello Maggiolini * Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, 87036 Rende, Italy; [email protected] * Correspondence: [email protected] or [email protected] Received: 8 September 2020; Accepted: 16 October 2020; Published: 18 October 2020 Simple Summary: The fibroblast growth factor/fibroblast growth factor receptor (FGF/FGFR) system represents an emerging therapeutic target in breast cancer. Here, we discussed previous studies dealing with FGFR molecular aberrations, the alterations in the FGF/FGFR signaling across the different subtypes of breast cancer, the functional interplay between the FGF/FGFR axis and important components of the breast microenvironment, the therapeutic usefulness of FGF/FGFR inhibitors for the treatment of breast cancer. Abstract: One of the major challenges in the treatment of breast cancer is the heterogeneous nature of the disease. With multiple subtypes of breast cancer identified, there is an unmet clinical need for the development of therapies particularly for the less tractable subtypes. Several transduction mechanisms are involved in the progression of breast cancer, therefore making the assessment of the molecular landscape that characterizes each patient intricate. Over the last decade, numerous studies have focused on the development of tyrosine kinase inhibitors (TKIs) to target the main pathways dysregulated in breast cancer, however their effectiveness is often limited either by resistance to treatments or the appearance of adverse effects. In this context, the fibroblast growth factor/fibroblast growth factor receptor (FGF/FGFR) system represents an emerging transduction pathway and therapeutic target to be fully investigated among the diverse anti-cancer settings in breast cancer. -
Familial Hyperkalemic Hypertension
Disease of the Month Familial Hyperkalemic Hypertension Juliette Hadchouel,* Ce´line Delaloy,* Se´bastien Faure´,† Jean-Michel Achard,† and Xavier Jeunemaitre* *Colle`ge de France, Paris; INSERM U36, Paris; AP-HP, Department of Genetics, Hoˆpital Europe´en Georges Pompidou; University Paris-Descartes, Faculty of Medicine, Paris, France; and †Division of Nephrology and Department of Physiology, Limoges University Hospital, Limoges, France J Am Soc Nephrol 17: 208–217, 2006. doi: 10.1681/ASN.2005030314 amilial hyperkalemic hypertension (FHHt) syndrome biochemical abnormalities and age or BP, which seemed to (1,2), also known as Gordon syndrome (3) or pseudohy- depend primarily on age in affected individuals (11). This F poaldosteronism type 2 (4), is a rare inherited form of phenotypic variability, associated with sensitivity to thia- low-renin hypertension associated with hyperkalemia and hy- zides—which are widely used in hypertension—and with a low perchloremic metabolic acidosis in patients with a normal GFR probability of this rare disease’s being recognized by most (OMIM no. 145260). This monogenic form of arterial hyperten- doctors may have led to an underestimation of its frequency. sion has excited new interest since the discovery of a new, The mode of inheritance of the disease is consistent with unsuspected molecular pathway that is responsible for both the autosomal dominant transmission in most, if not all, of the biochemical abnormalities and the increase in BP observed. pedigrees reported. However, we have identified two families Genetic analysis has led to the identification of mutations in in which the parents of the affected individuals were first two genes that belong to a new family of kinases, the WNK cousins, suggesting possible autosomal recessive transmission. -
FGF20 and DKK1 Are Transcriptional Targets of Catenin and FGF20 Is
The EMBO Journal (2005) 24, 73–84 | & 2005 European Molecular Biology Organization | All Rights Reserved 0261-4189/05 www.embojournal.org THE EMBO JOJOURNALUR NAL FGF-20 and DKK1 are transcriptional targets of b-catenin and FGF-20 is implicated in cancer and development Mario N Chamorro1,4, Introduction Donald R Schwartz2,5, Alin Vonica3,5, Wnt proteins are secreted glycoproteins that bind and acti- Ali H Brivanlou3, Kathleen R Cho2 1, vate two classes of co-receptors, LDL-related proteins (LRPs) and Harold E Varmus * and members of the Frizzled protein family. Signaling in- 1Cancer Biology and Genetics Program, Sloan-Kettering Institute, itiated by Wnts and their receptors controls a wide variety of Varmus Laboratory, Memorial Sloan-Kettering Cancer Center, New York, cell processes, including cell fate specification, differentia- NY, USA, 2Department of Pathology, The University of Michigan Medical 3 tion, migration, and polarity (reviewed in Peifer and Polakis, School, Ann Arbor, MI, USA, The Laboratory of Vertebrate Embryology, b The Rockefeller University, New York, NY, USA and 4Cell Biology 2000). -Catenin is the major effector of the canonical Wnt Program, Cornell University, Weill Graduate School of Medical Sciences, signaling pathway. In the absence of Wnt, cytosolic b-catenin New York, NY, USA forms a complex with Axin and adenomatous polyposis coli (APC) proteins, and is rapidly degraded by the ubiquitina- b-catenin is the major effector of the canonical Wnt signal- tion–proteosome system. Wnt signaling inactivates the ing pathway. Mutations in components of the pathway that b-catenin destruction complex, so that b-catenin is stabilized, stabilize b-catenin result in augmented gene transcription accumulates in the cytoplasm and nucleus, and forms hetero- and play a major role in many human cancers.