Segregation of Nucleolar Components Coincides with Caspase-3 Activation in Cisplatin-Treated Hela Cells
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Living Cell Cytosol Stability to Segregation and Freezing-Out: Thermodynamic Aspect
1 Living Cell Cytosol Stability to Segregation and Freezing-Out: Thermodynamic aspect Viktor I. Laptev Russian New University, Moscow, Russian Federation The cytosol state in living cell is treated as homogeneous phase equilibrium with a special feature: the pressure of one phase is positive and the pressure of the other is negative. From this point of view the cytosol is neither solution nor gel (or sol as a whole) regardless its components (water and dissolved substances). This is its unique capability for selecting, sorting and transporting reagents to the proper place of the living cell without a so-called “pipeline”. To base this statement the theoretical investigation of the conditions of equilibrium and stability of the medium with alternative-sign pressure is carried out under using the thermodynamic laws and the Gibbs” equilibrium criterium. Keywords: living cellular processes; cytosol; intracellular fluid; cytoplasmic matrix; hyaloplasm matrix; segregation; freezing-out; zero isobare; negative pressure; homogeneous phase equilibrium. I. INTRODUCTION A. Inertial Motion in U,S,V-Space A full description of the thermodynamic state of a medium Cytosol in a living cell (intracellular fluid or cytoplasmic without chemical interactions is given by a relationship matrix, hyaloplasm matrix, aqueous cytoplasm) is a between the internal energy U, entropy S and volume V [5]. combination of the water dissolved substances. It places in the The mathematical procedure for a negative pressure supposes cell between the plasma membrane, the nucleus and a vacuole; using absolute values of the internal energy U and entropy S. it is a medium keeping granular-like and whisker-like The surface φ(U,S,V) = 0 corresponds to the all structures. -
Introduction to the Cell Cell History Cell Structures and Functions
Introduction to the cell cell history cell structures and functions CK-12 Foundation December 16, 2009 CK-12 Foundation is a non-profit organization with a mission to reduce the cost of textbook materials for the K-12 market both in the U.S. and worldwide. Using an open-content, web-based collaborative model termed the “FlexBook,” CK-12 intends to pioneer the generation and distribution of high quality educational content that will serve both as core text as well as provide an adaptive environment for learning. Copyright ©2009 CK-12 Foundation This work is licensed under the Creative Commons Attribution-Share Alike 3.0 United States License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/us/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA. Contents 1 Cell structure and function dec 16 5 1.1 Lesson 3.1: Introduction to Cells .................................. 5 3 www.ck12.org www.ck12.org 4 Chapter 1 Cell structure and function dec 16 1.1 Lesson 3.1: Introduction to Cells Lesson Objectives • Identify the scientists that first observed cells. • Outline the importance of microscopes in the discovery of cells. • Summarize what the cell theory proposes. • Identify the limitations on cell size. • Identify the four parts common to all cells. • Compare prokaryotic and eukaryotic cells. Introduction Knowing the make up of cells and how cells work is necessary to all of the biological sciences. Learning about the similarities and differences between cell types is particularly important to the fields of cell biology and molecular biology. -
Module IV Nucleus
Module IV Nucleus Structure and functions of interphase nucleus, Nuclear membrane, pore complex, structure and functions of nucleolus Chromosomes – Structure; Heterochromatin, Euchromatin, Nucleosomes, Nucleus is the most important part of the cell situated in the cytoplasm. All the cellular activities are controlled by it. Nucleus is a directing and organizing unit without which the cell could not exist. It was discovered by Robert Brown (1831) in flowering plants and is now recognized as the structure that contains the hereditary material of the cell. The study of nucleus or karyosome constitutes karyology. The location of nucleus varies in the cell depending upon the species. Usually it is situated in the centre of the cell surrounded on all sides by cytoplasm. In green algae, Acetabularia, it shows various positions, though mainly present in the basal part of cell. Generally the nuclei are scattered in the cytoplasm. Morphology: 1. Shape: The shape of nucleus is variable according to cell type. It is generally spheroid but ellipsoid or flattened nuclei may also occur in certain cells. The nuclear margins are generally smooth but they may be lobulated bearing small infoldings of nuclear membrane as in leucocytes. In certain white blood corpuscles the nucleus is dumbbell-shaped and exhibits variation during life history stages. In human neutrophil, it is trilobed. 2. Number: Mostly cell contains a single nucleus, known as mononucleate cell. Cells containing two nuclei are known as binucleate cells (e.g., Paramecium), and cells of cartilage and liver. Sometimes more than two nuclei (3 to 100 nuclei) are present in a single cell. -
VDAC: the Channel at the Interface Between Mitochondria and the Cytosol
Molecular and Cellular Biochemistry 256/257: 107–115, 2004. © 2004 Kluwer Academic Publishers. Printed in the Netherlands. 107 VDAC: The channel at the interface between mitochondria and the cytosol Marco Colombini Department of Biology, University of Maryland, MD, USA Abstract The mitochondrial outer membrane is not just a barrier but a site of regulation of mitochondrial function. The VDAC family of proteins are the major pathways for metabolite flux through the outer membrane. These can be regulated in a variety of ways and the integration of these regulatory inputs allows mitochondrial metabolism to be adjusted to changing cellular conditions. This includes total blockage of the flux of anionic metabolites leading to permeabilization of the outer membrane to small proteins followed by apoptotic cell death. (Mol Cell Biochem 256/257: 107–115, 2004) Key words: mitochondrion, outer membrane, apoptosis, isoforms, metabolism Introduction author’s view, see also ref. [6] for an alternative view). In- formation on VDAC can also be found on the VDAC web Mitochondria live, function, and reproduce in a very rich and page: www.life.umd.edu/vdac. friendly environment, the cytosol of the eukaryotic cell. Just as the plasma membrane is the interface between the inter- stitial space and the cytosol, so the mitochondrial outer The VDAC channels: Conservation and membrane is the interface between the cytosol and the mi- tochondrial spaces. Both separate the cell or the organelle specialization from its environment and both act as selective barriers to the entry and exit of matter. These membranes are also logical VDAC channels (Fig. 1) from a wide variety of sources (plants sites for control. -
Molecular Genetics of Microcephaly Primary Hereditary: an Overview
brain sciences Review Molecular Genetics of Microcephaly Primary Hereditary: An Overview Nikistratos Siskos † , Electra Stylianopoulou †, Georgios Skavdis and Maria E. Grigoriou * Department of Molecular Biology & Genetics, Democritus University of Thrace, 68100 Alexandroupolis, Greece; [email protected] (N.S.); [email protected] (E.S.); [email protected] (G.S.) * Correspondence: [email protected] † Equal contribution. Abstract: MicroCephaly Primary Hereditary (MCPH) is a rare congenital neurodevelopmental disorder characterized by a significant reduction of the occipitofrontal head circumference and mild to moderate mental disability. Patients have small brains, though with overall normal architecture; therefore, studying MCPH can reveal not only the pathological mechanisms leading to this condition, but also the mechanisms operating during normal development. MCPH is genetically heterogeneous, with 27 genes listed so far in the Online Mendelian Inheritance in Man (OMIM) database. In this review, we discuss the role of MCPH proteins and delineate the molecular mechanisms and common pathways in which they participate. Keywords: microcephaly; MCPH; MCPH1–MCPH27; molecular genetics; cell cycle 1. Introduction Citation: Siskos, N.; Stylianopoulou, Microcephaly, from the Greek word µικρoκεϕαλi´α (mikrokephalia), meaning small E.; Skavdis, G.; Grigoriou, M.E. head, is a term used to describe a cranium with reduction of the occipitofrontal head circum- Molecular Genetics of Microcephaly ference equal, or more that teo standard deviations -
A Physicochemical Perspective of Aging from Single-Cell Analysis Of
TOOLS AND RESOURCES A physicochemical perspective of aging from single-cell analysis of pH, macromolecular and organellar crowding in yeast Sara N Mouton1, David J Thaller2, Matthew M Crane3, Irina L Rempel1, Owen T Terpstra1, Anton Steen1, Matt Kaeberlein3, C Patrick Lusk2, Arnold J Boersma4*, Liesbeth M Veenhoff1* 1European Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Groningen, Netherlands; 2Department of Cell Biology, Yale School of Medicine, New Haven, United States; 3Department of Pathology, School of Medicine, University of Washington, Seattle, United States; 4DWI-Leibniz Institute for Interactive Materials, Aachen, Germany Abstract Cellular aging is a multifactorial process that is characterized by a decline in homeostatic capacity, best described at the molecular level. Physicochemical properties such as pH and macromolecular crowding are essential to all molecular processes in cells and require maintenance. Whether a drift in physicochemical properties contributes to the overall decline of homeostasis in aging is not known. Here, we show that the cytosol of yeast cells acidifies modestly in early aging and sharply after senescence. Using a macromolecular crowding sensor optimized for long-term FRET measurements, we show that crowding is rather stable and that the stability of crowding is a stronger predictor for lifespan than the absolute crowding levels. Additionally, in aged cells, we observe drastic changes in organellar volume, leading to crowding on the *For correspondence: micrometer scale, which we term organellar crowding. Our measurements provide an initial [email protected] framework of physicochemical parameters of replicatively aged yeast cells. (AJB); [email protected] (LMV) Competing interest: See Introduction page 19 Cellular aging is a process of progressive decline in homeostatic capacity (Gems and Partridge, Funding: See page 19 2013; Kirkwood, 2005). -
Nuclear Pore Complexes and Nucleocytoplasmic Exchange
Pore Relations: Nuclear Pore Complexes and Nucleocytoplasmic Exchange Michael P. Rout and John D. Aitchison Laboratory of Cellular and Structural Biology The Rockefeller University, 1230 York Ave, New York, NY 10021 USA [email protected] 212 327 8135 Department of Cell Biology University of Alberta Edmonton, Alberta T6G 2H7 Canada [email protected] 780 492 6062 1 Introduction One of the main characteristics distinguishing eukaryotes from prokaryotes is that eukaryotes compartmentalize many life processes within membrane bound organelles. The most obvious of these is the nucleus, bounded by a double-membraned nuclear envelope (NE). The NE thus acts as a barrier separating the nucleoplasm from the cytoplasm. An efficient, regulated and continuous exchange system between the nucleoplasm and cytoplasm is therefore necessary to maintain the structures of the nucleus and the communication between the genetic material and the rest of the cell. The sole mediators of this exchange are the nuclear pore complexes (NPCs), large proteinaceous assemblies embedded within reflexed pores of the NE membranes (Davis, 1995). While small molecules (such as nucleotides, water and ions) can freely diffuse across the NPCs, macromolecules such as proteins and ribonucleoprotein (RNP) particles are actively transported in a highly regulated and selective manner. Transport through the NPC requires specific soluble factors which recognize transport substrates in either the nucleoplasm or cytoplasm and mediate their transport by docking them to specific components of the NPC (Mattaj and Englmeier, 1998). In order to understand how transport works, we must first catalog the soluble transport factors and NPC components, and then study the details of how they interact. -
Nucleolus: a Central Hub for Nuclear Functions Olga Iarovaia, Elizaveta Minina, Eugene Sheval, Daria Onichtchouk, Svetlana Dokudovskaya, Sergey Razin, Yegor Vassetzky
Nucleolus: A Central Hub for Nuclear Functions Olga Iarovaia, Elizaveta Minina, Eugene Sheval, Daria Onichtchouk, Svetlana Dokudovskaya, Sergey Razin, Yegor Vassetzky To cite this version: Olga Iarovaia, Elizaveta Minina, Eugene Sheval, Daria Onichtchouk, Svetlana Dokudovskaya, et al.. Nucleolus: A Central Hub for Nuclear Functions. Trends in Cell Biology, Elsevier, 2019, 29 (8), pp.647-659. 10.1016/j.tcb.2019.04.003. hal-02322927 HAL Id: hal-02322927 https://hal.archives-ouvertes.fr/hal-02322927 Submitted on 18 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Nucleolus: A Central Hub for Nuclear Functions Olga Iarovaia, Elizaveta Minina, Eugene Sheval, Daria Onichtchouk, Svetlana Dokudovskaya, Sergey Razin, Yegor Vassetzky To cite this version: Olga Iarovaia, Elizaveta Minina, Eugene Sheval, Daria Onichtchouk, Svetlana Dokudovskaya, et al.. Nucleolus: A Central Hub for Nuclear Functions. Trends in Cell Biology, Elsevier, 2019, 29 (8), pp.647-659. 10.1016/j.tcb.2019.04.003. hal-02322927 HAL Id: hal-02322927 https://hal.archives-ouvertes.fr/hal-02322927 Submitted on 18 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. -
Nanocarriers for Protein Delivery to the Cytosol: Assessing the Endosomal Escape of Poly(Lactide-Co-Glycolide)-Poly(Ethylene Imine) Nanoparticles
nanomaterials Article Nanocarriers for Protein Delivery to the Cytosol: Assessing the Endosomal Escape of Poly(Lactide-co-Glycolide)-Poly(Ethylene Imine) Nanoparticles Marianna Galliani 1,2,* , Chiara Tremolanti 3,4 and Giovanni Signore 1,2,5,* 1 Center of Nanotechnology Innovation @NEST, Istituto Italiano di Tecnologia, 56127 Pisa, Italy 2 NEST, Scuola Normale Superiore, 56127 Pisa, Italy 3 Department of Pharmacy, University of Pisa, 56126 Pisa, Italy; [email protected] 4 Istituto di Fisiologia Clinica, National Research Council, 56124 Pisa, Italy 5 Fondazione Pisana per la Scienza ONLUS, 56121 Pisa, Italy * Correspondence: [email protected] (M.G.); [email protected] (G.S.) Received: 15 March 2019; Accepted: 21 April 2019; Published: 23 April 2019 Abstract: Therapeutic proteins and enzymes are a group of interesting candidates for the treatment of numerous diseases, but they often require a carrier to avoid degradation and rapid clearance in vivo. To this end, organic nanoparticles (NPs) represent an excellent choice due to their biocompatibility, and cross-linked enzyme aggregates (CLEAs)-loaded poly (lactide-co-glycolide) (PLGA) NPs have recently attracted attention as versatile tools for targeted enzyme delivery. However, PLGA NPs are taken up by cells via endocytosis and are typically trafficked into lysosomes, while many therapeutic proteins and enzymes should reach the cellular cytosol to perform their activity. Here, we designed a CLEAs-based system implemented with a cationic endosomal escape agent (poly(ethylene imine), PEI) to extend the use of CLEA NPs also to cytosolic enzymes. We demonstrated that our system can deliver protein payloads at cytoplasm level by two different mechanisms: Endosomal escape and direct translocation. -
Roles of Cytosol and Cytoplasmic Particles in Nuclear Envelope Assembly and Sperm Pronuclear Formation in Cell-Free Preparations from Amphibian Eggs
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central Roles of Cytosol and Cytoplasmic Particles in Nuclear Envelope Assembly and Sperm Pronuclear Formation in Cell-free Preparations from Amphibian Eggs MANFRED J . LOHKA and YOSHIO MASUI Department of Zoology, University of Toronto, Toronto, Ontario, Canada M5S 1A1 . Dr. Lohka's present address is Department of Pharmacology, University of Colorado School of Medicine, Denver, Colorado 80262 . ABSTRACT A cell-free cytoplasmic preparation from activated Rana pipiens eggs could induce in demembranated Xenopus laevis sperm nuclei morphological changes similar to those seen during pronuclear formation in intact eggs . The condensed sperm chromatin underwent an initial rapid, but limited, dispersion . A nuclear envelope formed around the dispersed chro- matin and the nuclei enlarged . The subcellular distribution of the components required for these changes was examined by separating the preparations into soluble (cytosol) and partic- ulate fractions by centrifugation at 150,000 g for 2 h . Sperm chromatin was incubated with the cytosol or with the particulate material after it had been resuspended in either the cytosol, heat-treated (60 or 100°C) cytosol or buffer . We found that the limited dispersion of chromatin occurred in each of these ooplasmic fractions, but not in the buffer alone . Nuclear envelope assembly required the presence of both untreated cytosol and particulate material . Ultrastruc- tural examination of the sperm chromatin during incubation in the preparations showed that membrane vesicles of -200 nm in diameter, found in the particulate fraction, flattened and fused together to contribute the membranous components of the nuclear envelope . -
Functional Studies of Nuclear Envelope-Associated Proteins in Saccharomyces Cerevisiae
Functional studies of nuclear envelope-associated proteins in Saccharomyces cerevisiae Ida Olsson Stockholm University © Ida Olsson, Stockholm 2008 ISBN 978-91-7155-666-0, pp 1-58 Typesetting: Intellecta Docusys Printed in Sweden by Universitetsservice US-AB, Stockholm 2008 Distributor: Department of Biochemistry and Biophysics, Stockholm University To Carl with love ABSTRACT Proteins of the nuclear envelope play important roles in a variety of cellular processes e.g. transport of proteins between the nucleus and cytoplasm, co- ordination of nuclear and cytoplasmic events, anchoring of chromatin to the nuclear periphery and regulation of transcription. Defects in proteins of the nuclear envelope and the nuclear pore complexes have been related to a number of human diseases. To understand the cellular functions in which nuclear envelope proteins participate it is crucial to map the functions of these proteins. The present study was done in order to characterize the role of three different proteins in functions related to the nuclear envelope in the yeast Saccharo- myces cerevisiae. The arginine methyltransferase Rmt2 was demonstrated to associate with proteins of the nuclear pore complexes and to influence nu- clear export. In addition, Rmt2 was found to interact with the Lsm4 protein involved in RNA degradation, splicing and ribosome biosynthesis. These results provide support for a role of Rmt2 at the nuclear periphery and poten- tially in nuclear transport and RNA processing. The integral membrane pro- tein Cwh43 was localized to the inner nuclear membrane and was also found at the nucleolus. A nuclear function for Cwh43 was demonstrated by its abil- ity to bind DNA in vitro. -
Membrane Structure and Function
Chapter 7 Membrane Structure and Function Lecture Outline Overview: Life at the Edge • The plasma membrane separates the living cell from its surroundings. • This thin barrier, 8 nm thick, controls traffic into and out of the cell. • Like all biological membranes, the plasma membrane is selectively permeable, allowing some substances to cross more easily than others. • The formation of a membrane that encloses a solution different from the surrounding solution while still permitting the uptake of nutrients and the elimination of waste products was a key event in the evolution of life. • The ability of the cell to discriminate in its chemical exchanges with its environment is fundamental to life. • It is the plasma membrane and its component molecules that make this selectivity possible. Concept 7.1 Cellular membranes are fluid mosaics of lipids and proteins. • The main macromolecules in membranes are lipids and proteins, but carbohydrates are also important. • The most abundant lipids are phospholipids. • Phospholipids and most other membrane constituents are amphipathic molecules, which have both hydrophobic and hydrophilic regions. Membrane models have evolved to fit new data. • The arrangement of phospholipids and proteins in biological membranes is described by the fluid mosaic model. • In this model, the membrane is a fluid structure with a “mosaic” of various proteins embedded in or attached to a double layer (bilayer) of phospholipids. • Models of membranes were developed long before membranes were first seen with electron microscopes in the 1950s. • In 1915, membranes isolated from red blood cells were chemically analyzed and found to be composed of lipids and proteins. • In 1925, E.