Mechanistic Studies of the Racemization of Optically Active Phenyl Benzenethiolsulfinate and Related Reactions
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Pathways for Sensing and Responding to Hydrogen Peroxide at the Endoplasmic Reticulum
cells Review Pathways for Sensing and Responding to Hydrogen Peroxide at the Endoplasmic Reticulum Jennifer M. Roscoe and Carolyn S. Sevier * Department of Molecular Medicine, Cornell University, Ithaca, NY 14853, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-607-253-3657 Received: 14 September 2020; Accepted: 15 October 2020; Published: 18 October 2020 Abstract: The endoplasmic reticulum (ER) has emerged as a source of hydrogen peroxide (H2O2) and a hub for peroxide-based signaling events. Here we outline cellular sources of ER-localized peroxide, including sources within and near the ER. Focusing on three ER-localized proteins—the molecular chaperone BiP, the transmembrane stress-sensor IRE1, and the calcium pump SERCA2—we discuss how post-translational modification of protein cysteines by H2O2 can alter ER activities. We review how changed activities for these three proteins upon oxidation can modulate signaling events, and also how cysteine oxidation can serve to limit the cellular damage that is most often associated with elevated peroxide levels. Keywords: endoplasmic reticulum (ER); hydrogen peroxide; reactive oxygen species (ROS); redox signaling; cysteine oxidation; BiP; IRE1; SERCA2; unfolded protein response (UPR) 1. Introduction All cells are susceptible to oxidative damage. Damage often appears concomitant with a buildup of reactive oxidants and/or a loss of antioxidant systems. In particular, an accumulation of cellular reactive oxygen species (ROS) has attracted much attention as a source of cellular damage and a cause for a loss of cellular function [1]. In keeping with these observations, most historical discussions of ROS focus on the need to defend against the toxic and unavoidable consequences of cellular ROS production, in order to limit cellular dysfunction and disease. -
The Role of Hydrogen Bonding in Paracetamol–Solvent and Paracetamol–Hydrogel Matrix Interactions
materials Article The Role of Hydrogen Bonding in Paracetamol–Solvent and Paracetamol–Hydrogel Matrix Interactions Marta Miotke-Wasilczyk *, Marek Józefowicz * , Justyna Strankowska and Jerzy Kwela Insitute of Experimental Physics, Faculty of Mathematics, Physics and Informatics, University of Gda´nsk, Wita Stwosza 57, 80-308 Gda´nsk,Poland; [email protected] (J.S.); [email protected] (J.K.) * Correspondence: [email protected] (M.M.-W.); [email protected] (M.J.) Abstract: The photophysical and photochemical properties of antipyretic drug – paracetamol (PAR) and its two analogs with different substituents (acetanilide (ACT) and N-ethylaniline (NEA)) in 14 solvents of different polarity were investigated by the use of steady–state spectroscopic technique and quantum–chemical calculations. As expected, the results show that the spectroscopic behavior of PAR, ACT, and NEA is highly dependent on the nature of the solute–solvent interactions (non- specific (dipole-dipole) and specific (hydrogen bonding)). To characterize these interactions, the multiparameter regression analysis proposed by Catalán was used. In order to obtain a deeper insight into the electronic and optical properties of the studied molecules, the difference of the dipole moments of a molecule in the ground and excited state were determined using the theory proposed by Lippert, Mataga, McRae, Bakhshiev, Bilot, and Kawski. Additionally, the influence of the solute polarizability on the determined dipole moments was discussed. The results of the solvatochromic studies were related to the observations of the release kinetics of PAR, ACT, and NEA from polyurethane hydrogels. The release kinetics was analyzed using the Korsmayer-Peppas and Hopfenberg models. -
Peroxynitrite Oxidation of Aromatic Thiols: Characterization of the Products Formed Through Oxidation of Thionitrobenzoic Acid and Thionitropyridine by Peroxynitrite
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 2006 Peroxynitrite Oxidation of Aromatic Thiols: Characterization of the Products Formed through Oxidation of Thionitrobenzoic Acid and Thionitropyridine by Peroxynitrite Catherine Balchunas Mall College of William & Mary - Arts & Sciences Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Organic Chemistry Commons Recommended Citation Mall, Catherine Balchunas, "Peroxynitrite Oxidation of Aromatic Thiols: Characterization of the Products Formed through Oxidation of Thionitrobenzoic Acid and Thionitropyridine by Peroxynitrite" (2006). Dissertations, Theses, and Masters Projects. Paper 1539626852. https://dx.doi.org/doi:10.21220/s2-td8x-bb97 This Thesis is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. PEROXYNITRITE OXIDATION OF AROMATIC THIOLS Characterization of the Products Formed Through Oxidation of Thionitrobenzoic Acid and Thionitropyridine by Peroxynitrite A Thesis Presented to The Faculty of the Department of Chemistry The College of William and Mary in Virginia In Partial Fulfillment Of the Requirements for the Degree of Master of Science by Catherine Balchunas Mall 2006 APPROVAL SHEET This thesis is submitted in partial fulfillment of the requirements for the degree of Master of Science t * fVkxXA Catherine Balchunas Mall Approved by the Committee, April 2006 Dr. Lisa M. Landino, Advisor and Chair Dr. Dr. Gaw W. Rice 11 DEDICATION This thesis is dedicated to my husband, Matthew Mall, for being the guy I always dreamed I would someday marry. -
UNDERSTANDING SULFUR BASED REDOX BIOLOGY THROUGH ADVANCEMENTS in CHEMICAL BIOLOGY by THOMAS POOLE a Dissertation Submitted to T
UNDERSTANDING SULFUR BASED REDOX BIOLOGY THROUGH ADVANCEMENTS IN CHEMICAL BIOLOGY BY THOMAS POOLE A Dissertation Submitted to the Graduate Faculty of WAKE FOREST UNIVERSITY GRADUATE SCHOOL OF ARTS AND SCIENCES in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY Chemistry May 2017 Winston-Salem, North Carolina Approved By: S. Bruce King, Ph.D., Advisor Leslie B. Poole, Ph.D., Chair Patricia C. Dos Santos, Ph.D. Paul B. Jones, Ph.D. Mark E. Welker, Ph.D. ACKNOWLEDGEMENTS First and foremost I would like to thank professor S. Bruce King. His approach to science makes him an excellent role model that I strive to emulate. He is uniquely masterful at parsing science into important pieces and identifying the gaps and opportunities that others have missed. I thank him for the continued patience and invaluable insight as I’ve progressed through my graduate studies. This work would not have been possible without his insight and guiding suggestions. I would like to thank our collaborators who have proven invaluable in their support. Cristina Furdui has provided the knowledge, context, and biochemical support that allowed our work to be published in esteemed journals. Leslie Poole has provided the insight into redox biology and guidance towards appropriate experiments. I thank my committee members, Mark Welker and Patricia Dos Santos who have guided my graduate work from the beginning. Professor Dos Santos provided the biological perspective to evaluate my redox biology work. In addition, she helped guide the biochemical understanding required to legitimize my independent proposal. Professor Welker provided the scrutinizing eye for my early computational work and suggested validating the computational work with experimental data. -
Chapter 4 Antimicrobial Properties of Organosulfur Compounds
Chapter 4 Antimicrobial Properties of Organosulfur Compounds Osman Sagdic and Fatih Tornuk Abstract Organosulfur compounds are defi ned as organic molecules containing one or more carbon-sulfur bonds. These compounds are present particularly in Allium and Brassica vegetables and are converted to a variety of other sulfur con- taining compounds via hydrolysis by several herbal enzymes when the intact bulbs are damaged or cut. Sulfur containing hydrolysis products constitute very diverse chemical structures and exhibit several bioactive properties as well as antimicrobial. The antimicrobial activity of organosulfur compounds has been reported against a wide spectrum of bacteria, fungi and viruses. Despite the wide antimicrobial spec- trum, their pungent fl avor/odor is the most considerable factor restricting their com- mon use in foods as antimicrobial additives. However, meat products might be considered as the most suitable food materials in this respect since Allium and Brassica vegetables especially garlic and onion have been used as fl avoring and preservative agents in meat origin foods. In this chapter, the chemical diversity and in vitro and in food antimicrobial activity of the organosulfur compounds of Allium and Brassica plants are summarized. Keywords Organosulfur compounds • Garlic • Onion • Allium • Brassica • Thiosulfi nates • Glucosinolates O. Sagdic (*) Department of Food Engineering, Faculty of Chemical and Metallurgical Engineering , Yildiz Teknik University , 34220 Esenler , Istanbul , Turkey e-mail: [email protected] F. Tornuk S a fi ye Cikrikcioglu Vocational College , Erciyes University , 38039 Kayseri , Turkey A.K. Patra (ed.), Dietary Phytochemicals and Microbes, 127 DOI 10.1007/978-94-007-3926-0_4, © Springer Science+Business Media Dordrecht 2012 128 O. -
Solvent Dependent Absorption and Fluorescence Ofaketocyanine Dye
Indian Journal of Chemistry Vol. 34A, February 1995, pp. 94-101 Solvent dependent absorption and fluorescence of a ketocyanine dye in neat and binary mixed solvents Debashis Banerjee, Ashis Kumar Laha & Sanjib Bagchi" Department of Chemistry, Burdwan University, Burdwan 713 104, India Received 11 March 1994; revised and accepted 23 September 1994 The environmental effect on the ground and excited state properties of a ketocyanine dye has been studied by monitoring its absorption and fluorescence characteristics in various pure and bi- nary mixed solvents. The spectroscopic transition leading to the longest wavelength absorption or fluorescence has been found to involve considerable intramolecular charge transfer as evidenced by semiempirical MO calculations at the AMI level. Ground state complexation is indicated in protic solvents, aromatic hydrocarbons and cyclic ethers. The fluorescence maximum, E (F), shows a corre- lation with ET (30) scale of solvent polarity. A multiple linear correlation of E(F) with Kamlet-Taft parameter representing solvent dipolarity (n*) and hydrogen bonding ability (a and (3) suggests that apart from dipolar interactions specific solute-solvent interactions are important in determining flu- orescence maxima. Study of E (F) in mixed binary solvents points to a preferential solvation of the solute in the S 1 state. The polarity probes have found extensive applic- nine dye in pure and mixed binary solvents by ations during the last couple of years, especially monitoring its longest wavelength absorption and for the evaluation of various microenvironrnental fluorescence band. The dye chosen for the pre- properties 1-5. Although a large number of miCTOP- sent study is (1-1 ),(9-1)-di-l ,9-di-(2,3-dihydroindo- olarity reporters involving solvatochromic spectral lyl)- 4,6-dimethylene- nona-l,3,6,8-tetraene-5-one transition are known, e.g., 4-methoxycarbonylpyri- (Fig. -
Acid Dissociation Constant - Wikipedia, the Free Encyclopedia Page 1
Acid dissociation constant - Wikipedia, the free encyclopedia Page 1 Help us provide free content to the world by donating today ! Acid dissociation constant From Wikipedia, the free encyclopedia An acid dissociation constant (aka acidity constant, acid-ionization constant) is an equilibrium constant for the dissociation of an acid. It is denoted by Ka. For an equilibrium between a generic acid, HA, and − its conjugate base, A , The weak acid acetic acid donates a proton to water in an equilibrium reaction to give the acetate ion and − + HA A + H the hydronium ion. Key: Hydrogen is white, oxygen is red, carbon is gray. Lines are chemical bonds. K is defined, subject to certain conditions, as a where [HA], [A−] and [H+] are equilibrium concentrations of the reactants. The term acid dissociation constant is also used for pKa, which is equal to −log 10 Ka. The term pKb is used in relation to bases, though pKb has faded from modern use due to the easy relationship available between the strength of an acid and the strength of its conjugate base. Though discussions of this topic typically assume water as the solvent, particularly at introductory levels, the Brønsted–Lowry acid-base theory is versatile enough that acidic behavior can now be characterized even in non-aqueous solutions. The value of pK indicates the strength of an acid: the larger the value the weaker the acid. In aqueous a solution, simple acids are partially dissociated to an appreciable extent in in the pH range pK ± 2. The a actual extent of the dissociation can be calculated if the acid concentration and pH are known. -
Fundamental Insights Into the Dissolution and Precipitation of Cellulosic Biomass from Ionic Liquid Mixtures
Fundamental Insights into the Dissolution and Precipitation of Cellulosic Biomass from Ionic Liquid Mixtures By David L. Minnick Submitted to the graduate degree program in Chemical and Petroleum Engineering and the Graduate Faculty of the University of Kansas in partial fulfillment of the requirements for the degree of Doctor of Philosophy. ________________________________ Chairperson: Aaron M. Scurto ________________________________ Bala Subramaniam ________________________________ Raghunath V. Chaudhari ________________________________ Laurence Weatherley ________________________________ Belinda Sturm Date Defended: July, 14th 2016 The Dissertation Committee for David L. Minnick certifies that this is the approved version of the following dissertation: Fundamental Insights into the Dissolution and Precipitation of Cellulosic Biomass from Ionic Liquid Mixtures ________________________________ Chairperson: Aaron M. Scurto Date approved: July, 22nd 2016 ii Abstract Ionic liquids (ILs) are a unique class of molecular salts that melt at temperatures below 100oC. The ionic functionality of ILs provide this class of molecules numerous advantages for applications in reactions, separations, and materials processing due to their molecular flexibility through cation/anion selection. Additionally, ionic liquids possess negligible vapor pressures and may lead to more sustainable or “green” processes by eliminating solvent-based air pollution. For these reasons ionic liquids are being targeted for implementation in a range of industrial processes as sustainable solvent technologies. The primary objective of this dissertation targets the application of ionic liquids to cellulosic biomass processing. For instance, chemical processing of biomass remains a challenge as the rigid inter- and intra- molecular hydrogen bonding network of cellulose renders it insoluble in nearly all aqueous and organic solvents. Alternatively, select ionic liquids (ILs) are capable of dissolving significant quantities. -
Racemization Ages (Radiocarbon Dating/Fossil Bones) JEFFREY L
Proc. Nat. Acad. Sci. USA Vol. 71, No. 3, pp. 914-917, March, 1974 Concordance of Collagen-Based Radiocarbon and Aspartic-Acid Racemization Ages (radiocarbon dating/fossil bones) JEFFREY L. BADA*t, ROY A. SCHROEDERt, REINER PROTSCHt, AND RAINER BERGERt tScripps Institution of Oceanography, University of California, San Diego, La Jolla, Calif. 92037; and tDepartments of Anthropology and Geography and Institute of Geophysics & Planetary Physics, University of California, Los Angeles, Los Angeles, Calif. 90024 Communicated by William A. Nierenberg, October 19, 1973 ABSTRACT By determining the extent of racemization racemization reaction. The only assumption required, in using of aspartic acid in a well-dated bone, it is possible to calcu- this approach, is that the average temperature experienced by late the in situ first-order rate constant for the intercon- version of the L and D enantiomers of aspartic acid. the "calibration" sample is representative of the average Collagen-based radiocarbon-dated bones are shown to be temperature experienced by other samples from the deposit. suitable samples for use in "calibrating" the racemization Many radiocarbon dates suitable for calibrating the aspar- reaction. Once the aspartic-acid racemization reaction has tic-acid racemization reaction have been derived from colla- been "calibrated" for a site, the reaction can be used to date other bones from the deposit. Ages deduced by this gen. However, it is important to show the dependability of method are in good agreement with radiocarbon ages. collagen dates by comparison with measurements made on These results provide evidence that the aspartic-acid charcoal or other organic materials. racemization reaction is an important chronological tool In this study we establish the dependability of radiocarbon for dating bones either too old or too small for radiocarbon collagen dates and then show the equivalence of collagen and dating. -
The Pennsylvania State University the Graduate School Department
The Pennsylvania State University The Graduate School Department of Chemistry STUDY OF SOLVATION EFFECTS IN POLAR-PROTIC SOLVENTS USING COMPUTER SIMULATIONS A Thesis in Chemistry by Scot Richard Mente Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy May 1999 Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. UMI Number: 9938021 UMI Microform 9938021 Copyright 1999, by UMI Company. All rights reserved. This microform edition is protected against unauthorized copying under Title 17, United States Code. UMI 300 North Zeeb Road Ann Arbor, MI 48103 Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. We approve the thesis of Scot Richard Mente. Date of Signature Mark Maroncelli Professor of Chemistry Thesis Advisor Chair of Committee Professor of Vy/v Desjarlais Assistant Professor of Chemistry z/'+n 1 tong-Qing Associate Professor of Materials Science and Engineering f o si tin Peter C. Jurs( Professor of Chemistry Acting Head of the Department of Chemistry Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. ABSTRACT Computational chemistry techniques are used to study various aspects of solvation and solvent effects in polar-protic systems. A variety of methods have been utilized, including Monte Carlo and molecular dynamics simulations, as well as semi-empirical and ab initio calculations. The first part of this thesis examines the solvent catalyzed proton transfer reaction in 7-Azaindole and 1 -Azacarbazole. In Chapter 2 classical Monte Carlo and molecular dynamics simulations are used to examine the structure and dynamics of solvation of aza- aromatic solutes in alcohol and water solvents in an effort to determine whether the existing interpretations of the solvent participation in these reactions are reasonable. -
Photochemical Processes Induced by the Irradiation of 4-Hydroxybenzophenone in Cite This: Photochem
Photochemical & Photobiological Sciences PAPER Photochemical processes induced by the irradiation of 4-hydroxybenzophenone in Cite this: Photochem. Photobiol. Sci., 2015, 14, 2087 different solvents† Francesco Barsotti,a Marcello Brigante,*b Mohamed Sarakha,b Valter Maurino,a Claudio Mineroa and Davide Vione*a,c The singlet and triplet excited states of 4-hydroxybenzophenone (4BPOH) undergo deprotonation in the presence of water to produce the anionic ground-state, causing fluorescence quenching and photoactiv- ity inhibition. The same process does not take place in an aprotic solvent such as acetonitrile. In aceto- nitrile, 4BPOH is fluorescent (interestingly, one of its fluorescence peaks overlaps with peak C of humic substances), it yields singlet oxygen upon irradiation and induces the triplet-sensitised transformation of phenol (with a rate constant of (6.6 ± 0.3) × 107 M−1 s−1 (μ ± σ) between phenol itself and a triplet 4BPOH). The 4BPOH shows an intermediate behaviour in a partially protic solvent such as 2-propanol, where some deprotonation of the excited states is observed. In acetonitrile/2-propanol mixtures (at least up to 50% of 2-propanol) there is also some evidence of alcohol oxidation by the 4BPOH triplet state, Received 25th May 2015, while the experimental data are silent concerning such a possibility in pure 2-propanol. Considering that Accepted 23rd September 2015 benzophenones are important components of chromophoric dissolved organic matter (CDOM) in surface DOI: 10.1039/c5pp00214a waters, the present findings could have significance for the photoactivity of the hydrophilic surface layers www.rsc.org/pps vs. the hydrophobic cores of CDOM. 5 Introduction T1, which triggers important triplet-sensitised processes. -
Bioactive S-Alk(En)Yl Cysteine Sulfoxide Metabolites in the Genus Allium: the Chemistry of Potential Therapeutic Agents
http://www.paper.edu.cn REVIEW Bioactive S-alk(en)yl cysteine sulfoxide metabolites in the genus www.rsc.org/npr Allium: the chemistry of potential therapeutic agents NPR Peter Rose,*a Matt Whiteman,a Philip K. Mooreb and Yi Zhun Zhu*b a Department of Biochemistry, National University of Singapore, 8 Medical Drive, Singapore, 117597. E-mail: [email protected]; Fax: (65)-6779-1453; Tel: (65)-6874-4996 b Department of Pharmacology, National University of Singapore, 18 Medical Drive, Singapore, 117597. E-mail: [email protected]; Fax: (65)-6773-7690; Tel: (65)-6874-3676 Received (in Cambridge, UK) 30th March 2005 First published as an Advance Article on the web 10th May 2005 Covering: 1892 to 2004 S-Alk(en)yl cysteine sulfoxides are odourless, non-protein sulfur amino acids typically found in members of the family Alliaceae and are the precursors to the lachrymatory and flavour compounds found in the agronomically important genus Allium. Traditionally, Allium species, particularly the onion (Allium cepa) and garlic (A. sativum), have been used for centuries in European, Asian and American folk medicines for the treatment of numerous human pathologies, however it is only recently that any significant progress has been made in determining their mechanisms of action. Indeed, our understanding of the role of Allium species in human health undoubtedly comes from the combination of several academic disciplines including botany, biochemistry and nutrition. During tissue damage, S-alk(en)yl cysteine sulfoxides are converted to their respective thiosulfinates or propanethial-S-oxide by the action of the enzyme alliinase (EC 4.4.1.4).