Enhanced Arbovirus Surveillance with Deep Sequencing Identification Of
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Mosquitoes in DENGUE MOSQUITOES the World? ARE MOST ACTIVE DURING BO the DAY AROUND a U S T YOUR YARD T SALTMARSH MOSQUITOES C ARE MOST a ACTIVE at DUSK
Mosquito awareness Did you know... Mosquito species there are 3500 vary in their species of biting behaviour mosquitoes in DENGUE MOSQUITOES the world? ARE MOST ACTIVE DURING BO THE DAY AROUND A U S T YOUR YARD T SALTMARSH MOSQUITOES C ARE MOST A ACTIVE AT DUSK AND DAWN F Council conducts 300 SPECIES IN AUSTRALIA mosquito control 40 SPECIES IN TOWNSVILLE World's COUNCIL CONDUCTS deadliest MOSQUITO CONTROL ON MOSQUITOES PUBLIC LAND, USING BOTH animals GROUND AND AERIAL TREATMENTS TO TARGET NUMBER OF PEOPLE MOSQUITO LARVAE. KILLED BY ANIMALS PER YEAR Mosquitoes wings beat 300-600 times per second Mosquitoes Mosquitoes can carry are attracted many diseases. to humans FROM THE ODOURS AND CARBON DIOXIDE WE EXPIRE FROM BREATHING Protect yourself OR SWEATING. townsville.qld.gov.au and your family Mosquitoes distance of travel 13 48 10 from mosquito bites from breeding point by using personal DENGUE MOSQUITO SALTMARSH MOSQUITO protection. 200M 50KM BREEDING PLACE Mosquito Mosquito Mosquito life cycle disease prevention A mosquito is an insect characterised by Protect yourself Did you know... Dengue. 1. Three body parts against disease-carrying Townsville City Do your weekly a. Head mosquitoes Council undertakes yard check. b. Thorax c. Abdomen reactive inspection ARE YOU MAKING DENGUE Mosquito borne How do of properties within MOSSIES WELCOME 2. A proboscis (for AROUND YOUR HOME? piercing and sucking) diseases found in mosquitoes the Townsville local TAKE RESPONSIBILITY TO 3. One pair of antennae Townsville include transmit government area PROTECT YOURSELF AND 4. One pair of wings YOUR FAMILY BY CHECKING Ross River virus diseases? based on customer YOUR YARD FOR ANYTHING 5. -
California Encephalitis Orthobunyaviruses in Northern Europe
California encephalitis orthobunyaviruses in northern Europe NIINA PUTKURI Department of Virology Faculty of Medicine, University of Helsinki Doctoral Program in Biomedicine Doctoral School in Health Sciences Academic Dissertation To be presented for public examination with the permission of the Faculty of Medicine, University of Helsinki, in lecture hall 13 at the Main Building, Fabianinkatu 33, Helsinki, 23rd September 2016 at 12 noon. Helsinki 2016 Supervisors Professor Olli Vapalahti Department of Virology and Veterinary Biosciences, Faculty of Medicine and Veterinary Medicine, University of Helsinki and Department of Virology and Immunology, Hospital District of Helsinki and Uusimaa, Helsinki, Finland Professor Antti Vaheri Department of Virology, Faculty of Medicine, University of Helsinki, Helsinki, Finland Reviewers Docent Heli Harvala Simmonds Unit for Laboratory surveillance of vaccine preventable diseases, Public Health Agency of Sweden, Solna, Sweden and European Programme for Public Health Microbiology Training (EUPHEM), European Centre for Disease Prevention and Control (ECDC), Stockholm, Sweden Docent Pamela Österlund Viral Infections Unit, National Institute for Health and Welfare, Helsinki, Finland Offical Opponent Professor Jonas Schmidt-Chanasit Bernhard Nocht Institute for Tropical Medicine WHO Collaborating Centre for Arbovirus and Haemorrhagic Fever Reference and Research National Reference Centre for Tropical Infectious Disease Hamburg, Germany ISBN 978-951-51-2399-2 (PRINT) ISBN 978-951-51-2400-5 (PDF, available -
The Viruses of Vervet Monkeys and of Baboons in South Africa
THE VIRUSES OF VERVET MONKEYS AND OF BABOONS IN SOUTH AFRICA Hubert Henri Malherbe A Thesis Submitted to the Faculty of Medicine University of the Witwatersrand, Johannesburg for the Degree of Doctor of Medicine Johannesburg 1974 11 ABSTRACT In this thesis are presented briefly the results of studies extending over the period 1955 to 1974. The use of vervet monkeys in South Africa for the production and testing of poliomyelitis vaccine made acquaintance with their viruses inevitable; and the subsequent introduction of the baboon as a laboratory animal of major importance also necessitates a knowledge of its viral flora. Since 1934 when Sabin and Wright described the B Virus which was recovered from a fatal human infection contracted as the result of a macaque monkey bite, numerous viral agents have been isolated from monkeys and baboons. In the United States of America, Dr. Robert N. Hull initiated the classification of simian viruses in an SV (for Simian Virus) series according to cytopathic effects as seen in unstained infected tissue cultures. In South Africa, viruses recovered from monkeys and baboons were designated numerically in an SA (for Simian Agent) series on the basis of cytopathic changes seen in stained preparations of infected cells. Integration of these two series is in progress. Simian viruses in South Africa have been recovered mainly through the inoculation of tissue cultures with material obtained by means of throat and rectal swabs, and also through the unmasking of latent agents present in kidney cells prepared as tissue cultures. Some evidence concerning viral activity has been derived from serological tests. -
MDHHS BOL Mosquito-Borne and Tick-Borne Disease Testing
MDHHS BUREAU OF LABORATORIES MOSQUITO-BORNE AND TICK-BORNE DISEASE TESTING MOSQUITO-BORNE DISEASES The Michigan Department of Health and Human Services Bureau of Laboratories (MDHHS BOL) offers comprehensive testing on clinical specimens for the following viral mosquito-borne diseases (also known as arboviruses) of concern in Michigan: California Group encephalitis viruses including La Crosse encephalitis virus (LAC) and Jamestown Canyon virus (JCV), Eastern Equine encephalitis virus (EEE), St. Louis encephalitis virus (SLE), and West Nile virus (WNV). Testing is available free of charge through Michigan healthcare providers for their patients. Testing for mosquito-borne viruses should be considered in patients presenting with meningitis, encephalitis, or other acute neurologic illness in which an infectious etiology is suspected during the summer months in Michigan. Methodologies include: • IgM detection for five arboviruses (LAC, JCV, EEE, SLE, WNV) • Molecular detection (PCR) for WNV only • Plaque Reduction Neutralization Test (PRNT) is also available and may be performed on select samples when indicated The preferred sample for arbovirus serology at MDHHS BOL is cerebral spinal fluid (CSF), followed by paired serum samples (acute and convalescent). In cases where CSF volume may be small, it is recommended to also include an acute serum sample. Please see the following document for detailed instructions on specimen requirements, shipping and handling instructions: http://www.michigan.gov/documents/LSGArbovirus_IgM_Antibody_Panel_8347_7.doc Michigan residents may also be exposed to mosquito-borne viruses when traveling domestically or internationally. In recent years, the most common arboviruses impacting travelers include dengue, Zika and chikungunya virus. MDHHS has the capacity to perform PCR for dengue, chikungunya and Zika virus and IgM for dengue and Zika virus to confirm commercial laboratory arbovirus findings or for complicated medical investigations. -
Virus Replication
Introduction • Encompasses > 150 viruses Rhabdoviridae •Rabies –only important human Brian Wells pathogen • One of the most lethal of all infectious diseases History History • Adapted from Latin meaning “to rage” • 1885 – Louis Pasteur – rabies vaccine • Greeks – lyssa – “frenzy” – Attenuated form of virus produced by inoculation of rabbit spinal cord • Rabies represents one of the oldest and most feared diseases • Occurs throughout the world except in Australia, Japan, Great Britain, • Recognized in Egypt before 2300 B.C. and islands such as Hawaii • Well described by Aristotle • “Reportable” disease • Iliad – “canine madness” Taxonomy Viral Structure • 3 Genera – Ephemerovirus, Lyssavirus, • 170 nm x 70 nm Vesiculovirus • Bullet-shaped enveloped virion • Infect vertebrates, invertebrates, and – Glycoprotein peplomers & matrix protein plants under envelope • Genus Lyssavirus comprises rabies • Helical symmetry virus and 3 rabies-like viruses • Linear minus sense ssRNA – 11-12 kb • Each capable of causing rabies-like • Glycoprotein spikes in outer membrane disease in humans bilayer 1 Virus Replication • Receptor-mediated endocytosis • Uncoat and release nucleocapsid into cytoplasm • Production of 5 monocistronic mRNA species - N, P (NS), M, G, L – by L+P viral transcriptase • Each mRNA capped and poly-A’ed • dsRNA replicative intermediate Virus Replication Virus Replication • N+P+L and (-) ssRNA form core • M forms matrix around core • Virus buds from glycoprotein area of plasma membrane and thus acquires its envelope Transmission • Unstable -
RNA-Dependent RNA Polymerase Consensus Sequence of the L-A Double-Stranded RNA Virus: Definition of Essential Domains
Proc. Nati. Acad. Sci. USA Vol. 89, pp. 2185-2189, March 1992 Biochemistry RNA-dependent RNA polymerase consensus sequence of the L-A double-stranded RNA virus: Definition of essential domains JUAN CARLOS RIBAS AND REED B. WICKNER Section on the Genetics of Simple Eukaryotes, Laboratory of Biochemical Pharmacology, National Institute of Diabetes and Digestive and Kidney Diseases, Building 8, Room 207, National Institutes of Health, Bethesda, MD 20892 Communicated by Herbert Tabor, November 27, 1991 (received for review October 2, 1991) ABSTRACT The L-A double-stranded RNA virus of Sac- lacking M1 (reviewed in refs. 10 and 18). M1 depends on L-A charomyces cerevisiac makes a gag-pol fusion protein by a -1 for its coat and replication proteins (19). MAK10 is one of ribosomal frameshift. The pol amino acid sequence includes three chromosomal genes needed for L-A virus propagation consensus patterns typical of the RNA-dependent RNA poly- within yeast cells (20). In a maklO host, L-A proteins merases (EC 2.7.7.48) of (+) strand and double-stranded RNA expressed from a cDNA clone of L-A support the replication viruses of animals and plants. We have carried out "alanine- of the M1 satellite virus but (for unknown reasons) do not scanning mutagenesis" of the region of L-A including the two support propagation of the L-A virus itself (21). Thus, while most conserved polymerase motifs, SG...T...NT..N (. = any L-A requires the MAK10 product itself, M1 requires MAK10 amino acid) and GDD. By constructing and analyzing 46 only because it requires the L-A-encoded proteins. -
The Non-Human Reservoirs of Ross River Virus: a Systematic Review of the Evidence Eloise B
Stephenson et al. Parasites & Vectors (2018) 11:188 https://doi.org/10.1186/s13071-018-2733-8 REVIEW Open Access The non-human reservoirs of Ross River virus: a systematic review of the evidence Eloise B. Stephenson1*, Alison J. Peel1, Simon A. Reid2, Cassie C. Jansen3,4 and Hamish McCallum1 Abstract: Understanding the non-human reservoirs of zoonotic pathogens is critical for effective disease control, but identifying the relative contributions of the various reservoirs of multi-host pathogens is challenging. For Ross River virus (RRV), knowledge of the transmission dynamics, in particular the role of non-human species, is important. In Australia, RRV accounts for the highest number of human mosquito-borne virus infections. The long held dogma that marsupials are better reservoirs than placental mammals, which are better reservoirs than birds, deserves critical review. We present a review of 50 years of evidence on non-human reservoirs of RRV, which includes experimental infection studies, virus isolation studies and serosurveys. We find that whilst marsupials are competent reservoirs of RRV, there is potential for placental mammals and birds to contribute to transmission dynamics. However, the role of these animals as reservoirs of RRV remains unclear due to fragmented evidence and sampling bias. Future investigations of RRV reservoirs should focus on quantifying complex transmission dynamics across environments. Keywords: Amplifier, Experimental infection, Serology, Virus isolation, Host, Vector-borne disease, Arbovirus Background transmission dynamics among arboviruses has resulted in Vertebrate reservoir hosts multiple definitions for the key term “reservoir” [9]. Given Globally, most pathogens of medical and veterinary im- the diversity of virus-vector-vertebrate host interactions, portance can infect multiple host species [1]. -
Arbovirus Discovery in Central African Republic (1973-1993): Zika, Bozo
Research Article Annals of Infectious Disease and Epidemiology Published: 13 Nov, 2017 Arbovirus Discovery in Central African Republic (1973- 1993): Zika, Bozo, Bouboui, and More Jean François Saluzzo1, Tom Vincent2, Jay Miller3, Francisco Veas4 and Jean-Paul Gonzalez5* 1Fab’entech, Lyon, France 2O’Neill Institute for National and Global Health Law, Georgetown University Law Center, Washington, DC, USA 3Department of Infectious Disease, Health Security Partners, Washington, DC, USA 4Laboratoire d’Immunophysiopathologie Moléculaire Comparée-UMR- Ministère de la Défense3, Institute de Recherche pour le Développement, Montpellier, France 5Center of Excellence for Emerging and Zoonotic Animal Disease, Kansas State University, Manhattan, KS, USA Abstract The progressive research on yellow fever and the subsequent emergence of the field of arbovirology in the 1950s gave rise to the continued development of a global arbovirus surveillance network with a specific focus on human pathogenic arboviruses of the tropical zone. Though unknown at the time, some of the arboviruses studies would emerge within the temperate zone decades later (e.g.: West Nile, Zika, Chikungunya). However, initial research by the surveillance network was heavily focused on the discovery, isolation, and characterization of numerous arbovirus species. Global arboviral surveillance has revealed a cryptic circulation of several arboviruses, mainly in wild cycles of the tropical forest. Although there are more than 500 registered arbovirus species, a mere one third has proved to be pathogenic to humans (CDC, 2015). Indeed, most known arboviruses did not initially demonstrate a pathogenicity to humans or other vertebrates, and were considered “orphans” (i.e. without known of vertebrate hosts). As a part of this global surveillance network, the Institut Pasteur International Network has endeavored to understand the role played by arboviruses in the etiology of febrile syndromes of unknown origin as one of its research missions. -
Characterization of Farmington Virus, a Novel Virus from Birds That Is Distantly Related to Members of the Family Rhabdoviridae
Palacios et al. Virology Journal 2013, 10:219 http://www.virologyj.com/content/10/1/219 RESEARCH Open Access Characterization of Farmington virus, a novel virus from birds that is distantly related to members of the family Rhabdoviridae Gustavo Palacios1†, Naomi L Forrester2,3,4†, Nazir Savji5,7†, Amelia P A Travassos da Rosa2, Hilda Guzman2, Kelly DeToy5, Vsevolod L Popov2,4, Peter J Walker6, W Ian Lipkin5, Nikos Vasilakis2,3,4 and Robert B Tesh2,4* Abstract Background: Farmington virus (FARV) is a rhabdovirus that was isolated from a wild bird during an outbreak of epizootic eastern equine encephalitis on a pheasant farm in Connecticut, USA. Findings: Analysis of the nearly complete genome sequence of the prototype CT AN 114 strain indicates that it encodes the five canonical rhabdovirus structural proteins (N, P, M, G and L) with alternative ORFs (> 180 nt) in the N and G genes. Phenotypic and genetic characterization of FARV has confirmed that it is a novel rhabdovirus and probably represents a new species within the family Rhabdoviridae. Conclusions: In sum, our analysis indicates that FARV represents a new species within the family Rhabdoviridae. Keywords: Farmington virus (FARV), Family Rhabdoviridae, Next generation sequencing, Phylogeny Background Results Therhabdovirusesarealargeanddiversegroupofsingle- Growth characteristics stranded, negative sense RNA viruses that infect a wide Three litters of newborn (1–2 day old) ICR mice with aver- range of vertebrates, invertebrates and plants [1]. The family agesizeof10pupswereinoculated intracerebrally (ic) with Rhabdoviridae is currently divided into nine approved ge- 15–20 μl, intraperitoneally (ip) with 100 μlorsubcutane- nera (Vesiculovirus, Perhavirus, Ephemerovirus, Lyssavirus, ously (sc) with 100 μlofastockofVero-grownFARV(CT Tibrovirus, Sigmavirus, Nucleorhabdovirus, Cytorhabdovirus AN 114) virus containing approximately 107 plaque and Novirhabdovirus);however,alargenumberofanimal forming units (PFU) per ml. -
A New Orbivirus Isolated from Mosquitoes in North-Western Australia Shows Antigenic and Genetic Similarity to Corriparta Virus B
viruses Article A New Orbivirus Isolated from Mosquitoes in North-Western Australia Shows Antigenic and Genetic Similarity to Corriparta Virus but Does Not Replicate in Vertebrate Cells Jessica J. Harrison 1,†, David Warrilow 2,†, Breeanna J. McLean 1, Daniel Watterson 1, Caitlin A. O’Brien 1, Agathe M.G. Colmant 1, Cheryl A. Johansen 3, Ross T. Barnard 1, Sonja Hall-Mendelin 2, Steven S. Davis 4, Roy A. Hall 1 and Jody Hobson-Peters 1,* 1 Australian Infectious Diseases Research Centre, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia 4072, Australia; [email protected] (J.J.H.); [email protected] (B.J.M.); [email protected] (D.W.); [email protected] (C.A.O.B.); [email protected] (A.M.G.C.); [email protected] (R.T.B.); [email protected] (R.A.H.) 2 Public Health Virology Laboratory, Department of Health, Queensland Government, P.O. Box 594, Archerfield 4108, Australia; [email protected] (D.W.); [email protected] (S.H.-M.) 3 School of Pathology and Laboratory Medicine, The University of Western Australia, Nedlands 6009, Australia; [email protected] 4 Berrimah Veterinary Laboratory, Department of Primary Industries and Fisheries, Darwin 0828, Australia; [email protected] * Correspondence: [email protected]; Tel.: +61-7-3365-4648 † These authors contributed equally to the work. Academic Editor: Karyn Johnson Received: 19 February 2016; Accepted: 10 May 2016; Published: 20 May 2016 Abstract: The discovery and characterisation of new mosquito-borne viruses provides valuable information on the biodiversity of vector-borne viruses and important insights into their evolution. -
Potential Arbovirus Emergence and Implications for the United Kingdom Ernest Andrew Gould,* Stephen Higgs,† Alan Buckley,* and Tamara Sergeevna Gritsun*
Potential Arbovirus Emergence and Implications for the United Kingdom Ernest Andrew Gould,* Stephen Higgs,† Alan Buckley,* and Tamara Sergeevna Gritsun* Arboviruses have evolved a number of strategies to Chikungunya virus and in the family Bunyaviridae, sand- survive environmental challenges. This review examines fly fever Naples virus (often referred to as Toscana virus), the factors that may determine arbovirus emergence, pro- sandfly fever Sicilian virus, Crimean-Congo hemorrhagic vides examples of arboviruses that have emerged into new fever virus (CCHFV), Inkoo virus, and Tahyna virus, habitats, reviews the arbovirus situation in western Europe which is widespread throughout Europe. Rift Valley fever in detail, discusses potential arthropod vectors, and attempts to predict the risk for arbovirus emergence in the virus (RVFV) and Nairobi sheep disease virus (NSDV) United Kingdom. We conclude that climate change is prob- could be introduced to Europe from Africa through animal ably the most important requirement for the emergence of transportation. Finally, the family Reoviridae contains a arthropodborne diseases such as dengue fever, yellow variety of animal arbovirus pathogens, including blue- fever, Rift Valley fever, Japanese encephalitis, Crimean- tongue virus and African horse sickness virus, both known Congo hemorrhagic fever, bluetongue, and African horse to be circulating in Europe. This review considers whether sickness in the United Kingdom. While other arboviruses, any of these pathogenic arboviruses are likely to emerge such as West Nile virus, Sindbis virus, Tahyna virus, and and cause disease in the United Kingdom in the foresee- Louping ill virus, apparently circulate in the United able future. Kingdom, they do not appear to present an imminent threat to humans or animals. -
Clinically Important Vector-Borne Diseases of Europe
Natalie Cleton, DVM Erasmus MC, Rotterdam Department of Viroscience [email protected] No potential conflicts of interest to disclose © by author ESCMID Online Lecture Library Erasmus Medical Centre Department of Viroscience Laboratory Diagnosis of Arboviruses © by author Natalie Cleton ESCMID Online LectureMarion Library Koopmans Chantal Reusken [email protected] Distribution Arboviruses with public health impact have a global and ever changing distribution © by author ESCMID Online Lecture Library Notifications of vector-borne diseases in the last 6 months on Healthmap.org Syndromes of arboviral diseases 1) Febrile syndrome: – Fever & Malaise – Headache & retro-orbital pain – Myalgia 2) Neurological syndrome: – Meningitis, encephalitis & myelitis – Convulsions & coma – Paralysis 3) Hemorrhagic syndrome: – Low platelet count, liver enlargement – Petechiae © by author – Spontaneous or persistent bleeding – Shock 4) Arthralgia,ESCMID Arthritis and Online Rash: Lecture Library – Exanthema or maculopapular rash – Polyarthralgia & polyarthritis Human arboviruses: 4 main virus families Family Genus Species examples Flaviviridae flavivirus Dengue 1-5 (DENV) West Nile virus (WNV) Yellow fever virus (YFV) Zika virus (ZIKV) Tick-borne encephalitis virus (TBEV) Togaviridae alphavirus Chikungunya virus (CHIKV) O’Nyong Nyong virus (ONNV) Mayaro virus (MAYV) Sindbis virus (SINV) Ross River virus (RRV) Barmah forest virus (BFV) Bunyaviridae nairo-, phlebo-©, orthobunyavirus by authorCrimean -Congo heamoragic fever (CCHFV) Sandfly fever virus