Int. J. Mol. Sci. 2012, 13, 8171-8188; doi:10.3390/ijms13078171 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article Proteomic Analysis of the Organ of Corti Using Nanoscale Liquid Chromatography Coupled with Tandem Mass Spectrometry Hong Peng 1,2, Miao Liu 1, Jason Pecka 3, Kirk W. Beisel 3,* and Shi-Jian Ding 1,4,* 1 Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE 68198, USA; E-Mails:
[email protected] (H.P.);
[email protected] (M.L.) 2 Department of Environmental, Agricultural & Occupational Health, University of Nebraska Medical Center, Omaha, NE 68198, USA 3 Department of Biomedical Sciences, Creighton University, Omaha, NE 68178, USA; E-Mail:
[email protected] 4 Mass Spectrometry and Proteomics Core Facility, University of Nebraska Medical Center, Omaha, NE 68198, USA * Authors to whom correspondence should be addressed; E-Mails:
[email protected] (K.W.B.);
[email protected] (S.-J.D.); Tel.: +1-402-280-4069 (K.W.B.); +1-402-559-4183 (S.-J.D.); Fax: +1-402-280-2690 (K.W.B.); +1-402-559-4651 (S.-J.D.). Received: 27 May 2012; in revised form: 5 June 2012 / Accepted: 25 June 2012 / Published: 2 July 2012 Abstract: The organ of Corti (OC) in the cochlea plays an essential role in auditory signal transduction in the inner ear. For its minute size and trace amount of proteins, the identification of the molecules in pathophysiologic processes in the bone-encapsulated OC requires both delicate separation and a highly sensitive analytical tool.