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Frequency-Dependent Selection by Wild Birds Promotes Polymorphism in Model Salamanders
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Faculty Publications and Other Works -- Ecology and Evolutionary Biology Ecology and Evolutionary Biology July 2013 Frequency-dependent selection by wild birds promotes polymorphism in model salamanders Benjamin M. Fitzpatrick University of Tennessee - Knoxville, [email protected] Kim Shook University of Tennessee - Knoxville Reuben Izally Farragut High School Follow this and additional works at: https://trace.tennessee.edu/utk_ecolpubs Part of the Ecology and Evolutionary Biology Commons Recommended Citation BMC Ecology 2009, 9:12 doi:10.1186/1472-6785-9-12 This Article is brought to you for free and open access by the Ecology and Evolutionary Biology at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Faculty Publications and Other Works -- Ecology and Evolutionary Biology by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. BMC Ecology BioMed Central Research article Open Access Frequency-dependent selection by wild birds promotes polymorphism in model salamanders Benjamin M Fitzpatrick*1, Kim Shook2,3 and Reuben Izally2,3 Address: 1Ecology & Evolutionary Biology, University of Tennessee, Knoxville TN 37996, USA, 2Pre-collegiate Research Scholars Program, University of Tennessee, Knoxville TN 37996, USA and 3Farragut High School, Knoxville TN 37934, USA Email: Benjamin M Fitzpatrick* - [email protected]; Kim Shook - [email protected]; Reuben Izally - [email protected] * Corresponding author Published: 8 May 2009 Received: 10 February 2009 Accepted: 8 May 2009 BMC Ecology 2009, 9:12 doi:10.1186/1472-6785-9-12 This article is available from: http://www.biomedcentral.com/1472-6785/9/12 © 2009 Fitzpatrick et al; licensee BioMed Central Ltd. -
The Evolution of Müllerian Mimicry
CORE Metadata, citation and similar papers at core.ac.uk Provided by Springer - Publisher Connector Naturwissenschaften (2008) 95:681–695 DOI 10.1007/s00114-008-0403-y REVIEW The evolution of Müllerian mimicry Thomas N. Sherratt Received: 9 February 2008 /Revised: 26 April 2008 /Accepted: 29 April 2008 /Published online: 10 June 2008 # Springer-Verlag 2008 Abstract It is now 130 years since Fritz Müller proposed systems based on profitability rather than unprofitability an evolutionary explanation for the close similarity of co- and the co-evolution of defence. existing unpalatable prey species, a phenomenon now known as Müllerian mimicry. Müller’s hypothesis was that Keywords Müllerian mimicry. Anti-apostatic selection . unpalatable species evolve a similar appearance to reduce Warning signals . Predation the mortality involved in training predators to avoid them, and he backed up his arguments with a mathematical model in which predators attack a fixed number (n) of each Introduction distinct unpalatable type in a given season before avoiding them. Here, I review what has since been discovered about In footnote to a letter written in 1860 from Alfred Russel Müllerian mimicry and consider in particular its relation- Wallace to Charles Darwin, Wallace (1860)drewattentionto ship to other forms of mimicry. Müller’s specific model of a phenomenon that he simply could not understand: “P.S. associative learning involving a “fixed n” in a given season ‘Natural Selection’ explains almost everything in Nature, but has not been supported, and several experiments now there is one class of phenomena I cannot bring under it,—the suggest that two distinct unpalatable prey types may be repetition of the forms and colours of animals in distinct just as easy to learn to avoid as one. -
ENZYME POLYMORPHISM and ADAPTATION ( Enzyme Polymorphism, Electrophor Esis, Neutral Hypothesis)
STADLER SYMP. Vo l . 7 ( 1 975) University of Missouri, Columbia - 91 ENZYME POLYMORPHISM AND ADAPTATION ( enzyme polymorphism, electrophor esis, neutral hypothesis) GEORGE B. JOHNSON Depa rtment of Biology Washin gt on University St. Louis, Missouri 631 30 SUMMARY After a brief resume of the controversy concerning the adaptive value of enzyme polymorphisms , a physiological hypo thesis is advanced that heterosis for enzymes of intermediary metabolism results from the differential kinetic behavior of the alleles, which in heterozygotes serve to buffer rate - deter mining reactions from environmental perturbations . Polymor phism within a population of alpine butterflies is examined in some detail , and the results strongly implicate ongoing selec tive processes. A more detailed understanding would seem to require more pointed in vivo physiological analyses of the polymorphic variants. A characterization of the physical na ture of the electrophoretic variants suggests that many vari ants do not involve a charge difference , while almost all in volve a significant conformational difference. The value of explicit error estimates associated with each data characteri zation is stressed throughout. INTRODUCTION With the extensive use in the last ten years of zone elec trophoresis as a genetic survey technique, it has become clear that level s of genet ic variability are quite h i gh in natural populations. The average levels of heterozygosity exceed 10% , 30% of examined loci are polymorphic . Thi s degree of varia bility is much higher than had been expected, and its inter pretation has become one of the central questions of popula tion genetics. Kimura and others have advanced the idea that this level of genetic variation reflects random events , the polymorphic enzyme alleles detected by electrophoresis actually having 92 JOHNSON little or no differential effect on fitness. -
I Xio- and Made the Rather Curious Assumption That the Mutant Is
NOTES AND COMMENTS NATURAL SELECTION AND THE EVOLUTION OF DOMINANCE P. M. SHEPPARD Deportment of Genetics, University of Liverpool and E.B. FORD Genetic Laboratories, Department of Zoology, Oxford 1. INTRODUCTION CROSBY(i 963) criticises the hypothesis that dominance (or recessiveness) has evolved and is not an attribute of the allelomorph when it arose for the first time by mutation. None of his criticisms is new and all have been discussed many times. However, because of a number of apparent mis- understandings both in previous discussions and in Crosby's paper, and the fact that he does not refer to some important arguments opposed to his own view, it seems necessary to reiterate some of the previous discussion. Crosby's criticisms fall into two parts. Firstly, he maintains, as did Wright (1929a, b) and Haldane (1930), that the selective advantage of genes modifying dominance, being of the same order of magnitude as the mutation rate, is too small to have any evolutionary effect. Secondly, he criticises, as did Wright (5934), the basic assumption that a new mutation when it first arises produces a phenotype somewhat intermediate between those of the two homozygotes. 2.THE SELECTION COEFFICIENT INVOLVED IN THE EVOLUTION OF DOMINANCE Thereis no doubt that the selective advantage of modifiers of dominance is of the order of magnitude of the mutation rate of the gene being modified. Crosby (p. 38) considered a hypothetical example with a mutation rate of i xio-and made the rather curious assumption that the mutant is dominant in the absence of modifiers of dominance. -
Signals of Predation-Induced Directional and Disruptive Selection in the Threespine Stickleback
Eawag_07048 Evolutionary Ecology Research, 2012, 14: 193–205 Signals of predation-induced directional and disruptive selection in the threespine stickleback Michael Zeller, Kay Lucek, Marcel P. Haesler, Ole Seehausen and Arjun Sivasundar Institute for Ecology and Evolution, University of Bern, Bern, Switzerland and Department of Fish Ecology, Eawag Centre for Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland ABSTRACT Background: Different predation regimes may exert divergent selection pressure on phenotypes and their associated genotypes. Threespine stickleback Gasterosteus aculeatus have a suite of bony structures, which have been shown to be an effective defence against predation and have a well-known genetic basis. Question: Do different predator regimes induce different selective pressures on growth rates and defence phenotypes in threespine stickleback between different habitats across distinct age classes? Hypothesis: In the presence of predation-induced selection, we expect diverging morphological responses between populations experiencing either low or high predation pressure. Study system: Threespine stickleback were sampled from two natural but recently established populations in an invasive range. One site has a high density of fish and insect predators, while at the other site predation pressure is low. Methods: We inferred predator-induced selection on defence traits by comparing the distribution of size classes, defence phenotypes, and an armour-related genotype between dif- ferent age classes in a high and a low predation regime. Results: Under high predation, there are indications of directional selection for faster growth, whereas lateral plate phenotypes and associated genotypes show indications for disruptive selection. Heterozygotes at the Eda-gene have a lower survival rate than either homozygote. Neither pattern is evident in the low predation regime. -
Visual and Other Selection in Cepaea
Heredity (1974), 33 (1), 17-31 VISUALAND OTHER SELECTION IN CEPAEA: A FURTHER EXAMPLE J. 3. D. GREENWOOD Department of Biological Sciences, University of Dundee Received4.iv.73 SUMMARY Populations of Cepaea nenwralis and C. hortensis have been sampled in a small area in north-west Worcestershire. No clear ecological separation between the two species is apparent. Morphs of C. nemoralis that one would expect to vary in frequency between woods and open habitats on the basis of visual selection do so in the manner expected. The variation shown by C. hortensis in the region is quite different and much reduced, compared with that of C. nernoralis. The expected differences between woods and open habitats still occur, however. Tests for any relations between morph-frequency and two other environmental variables (altitude and proximity to water) have been made. Only altitude shows such relations: unbanded in C. hortensis tends to rise in frequency with altitude and listeria in C. nemoralis may do so. The Index of Polymorphism of C. nemoralis is always high if C. hortensis is present, but may be low if the latter is absent. Several mechanisms which could explain this are suggested. Linkage disequiibria are apparent in C. nemoralis. Banding is deficient in browns and at an excess in yellows, compared with pinks, in all habitats. It is concluded that the diversity of selective forces acting affectively on Cepaea populations, not random events, is responsible for the wide variation between them in morph-frequencies. 1. INTRODUCTION DURING the last quarter of a century studies of the genetic variation of Cepaea nemoralis (L.) and C. -
Gene Mutation and DNA Polymorphism Outline of This Chapter
Gene mutation and DNA polymorphism Outline of this chapter Gene Mutation DNA Polymorphism GeneGene MutationMutation Definition Major Types DefinitionDefinition A gene mutation is a change in the nucleotide sequence that composes a gene. Somatic mutations Germline mutations SomaticSomatic mutationsmutations are mutations that occur in cells of the body excluding the germline. Affects subsequent somatic cell descendants Limited to impact on the individual and not transmitted to offspring Germline mutations are mutations that occur in the germline cells Possibility of transmission to offspring Major Types Point mutations Insertion or deletion Fusion gene Dynamic mutation Point mutation substitution of one base with another Point mutation Transition purine replaces purine A G or pyrimidine replaces pyrimidine C T Transversion purine replaces pyrimidine A G or pyrimidine replaces purine C T What are the consequences? Within coding region: Silent mutation (same sense mutation) Missense mutation Nonsense mutation Stop codon mutation Within noncoding region: Splicing mutation Regulatory sequence mutation SilentSilent MutationMutation changes one codon for an amino acid to another codon for that amino acid no change in amino acid MissenseMissense mutationmutation A point mutation that exchanges one codon for another causing substitution of an amino acid Missense mutations may affect protein function severely, mildly or not at all. CGT AGT Hemoglobin Four globular proteins surrounding heme group with iron atom: two beta chains and two alpha chains Function is to carry oxygen in red blood cells from lungs to body and carbon dioxide from cells to lungs SingleSingle basebase changechange inin hemoglobinhemoglobin genegene causescauses sicklesickle cellcell anemiaanemia Wild-type mutant allele allele Wild-type mutant phenotype phenotype NonsenseNonsense mutationmutation A point mutation changing a codon for an amino acid into a stop codon (UAA, UAG or UGA). -
Population Genetics of Polymorphism and Divergence Stanley A
Population Genetics of Polymorphism and Divergence Stanley A. Sawyer∗, † and Daniel L. Hartl† ∗Department of Mathematics, Washington University, St. Louis, Missouri 63130, †Department of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110 November 3, 1992 ABSTRACT Frequencies of mutant sites are modeled as a Poisson random field in two species that share a sufficiently recent common ancestor. The selective effect of the new alleles can be favorable, neutral, or detrimental. The model is applied to the sample configurations of nucleotides in the alcohol dehydrogenase gene (Adh) in Drosophila simulans and D. yakuba (McDonald and Kreitman 1991, Nature 351: 652–654). Assuming a synonymous mutation rate of 1.5 × 10−8 per site per year and 10 generations per year, we obtain 6 estimates for the effective population size (Ne =6.5 × 10 ), the species divergence time −6 (tdiv =3.74 Myr), and an average selection coefficient (σ =1.53 × 10 per generation for advantageous or mildly detrimental replacements), although it is conceivable that only two of the amino acid replacements were selected and the rest neutral. The analysis, which includes a sampling theory for the independent infinite sites model with selection, also suggests the estimate that the number of amino acids in the enzyme that are susceptible to favorable mutation is in the range 2–23 out of 257 total possible codon positions at any one time. The approach provides a theoretical basis for the use of a 2 × 2 contingency table to compare fixed differences and polymorphic sites with silent sites and amino acid replacements. t has been more than 25 years since Lewontin have been more at odds, and a great controversy en- I and Hubby (1966) first demonstrated high levels sued. -
Speciation Genetics: Evolving Approaches
REVIEWS Speciation genetics: evolving approaches Mohamed A. F. Noor* and Jeffrey L. Feder‡ Abstract | Much progress has been made in the past two decades in understanding Darwin’s mystery of the origins of species. Applying genomic techniques to the analysis of laboratory crosses and natural populations has helped to determine the genetic basis of barriers to gene flow which create new species. Although new methodologies have not changed the prevailing hypotheses about how species form, they have accelerated the pace of data collection. By facilitating the compilation of case studies, advances in genetic techniques will help to provide answers to the next generation of questions concerning the relative frequency and importance of different processes that cause speciation. Gene flow What types of genetic change bring about speciation is sophisticated methods has led to finer dissection of the The movement of alleles one of the most basic questions in biology. Speciation is a genetic origins of species down to the level of the indi- between local populations that fundamental outcome of life. Given metabolism, repro- vidual loci and eventually nucleotides. Technical and is due to the migration of duction, mutation, heredity, and the spatial–temporal statistical advances are also extending laboratory-based individuals. subdivision of the environment and of individuals into discovery to natural populations, allowing researchers Hybrid zone populations, new species form through time, increasing to investigate barriers to gene flow, genomic interactions A location where the hybrid biodiversity. The evolution of this biodiversity can only and the genetic permeability of species boundaries in offspring of two divergent, be fully explained if we identify the heritable underpin- hybrid zones where differentiated taxa overlap and inter- partially geographically nings of species formation and the forces responsible breed. -
Evolution and Ecology of Spider Coloration
P1: SKH/ary P2: MBL/vks QC: MBL/agr T1: MBL October 27, 1997 17:44 Annual Reviews AR048-27 Annu. Rev. Entomol. 1998. 43:619–43 Copyright c 1998 by Annual Reviews Inc. All rights reserved EVOLUTION AND ECOLOGY OF SPIDER COLORATION G. S. Oxford Department of Biology, University of York, P.O. Box 373, York YO1 5YW, United Kingdom; e-mail: [email protected] R. G. Gillespie Center for Conservation Research and Training, University of Hawaii, 3050 Maile Way, Gilmore 409, Honolulu, Hawaii 96822; e-mail: [email protected] KEY WORDS: color, crypsis, genetics, guanine, melanism, mimicry, natural selection, pigments, polymorphism, sexual dimorphism ABSTRACT Genetic color variation provides a tangible link between the external phenotype of an organism and its underlying genetic determination and thus furnishes a tractable system with which to explore fundamental evolutionary phenomena. Here we examine the basis of color variation in spiders and its evolutionary and ecological implications. Reversible color changes, resulting from several mechanisms, are surprisingly widespread in the group and must be distinguished from true genetic variation for color to be used as an evolutionary tool. Genetic polymorphism occurs in a large number of families and is frequently sex limited: Sex linkage has not yet been demonstrated, nor have the forces promoting sex limitation been elucidated. It is argued that the production of color is metabolically costly and is principally maintained by the action of sight-hunting predators. Key avenues for future research are suggested. INTRODUCTION Differences in color and pattern among individuals have long been recognized as providing a tractable system with which to address fundamental evolutionary questions (57). -
Population Dynamics of Underdominance Gene Drive Systems in Continuous Space
bioRxiv preprint doi: https://doi.org/10.1101/449355; this version posted October 22, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Population dynamics of underdominance gene drive systems in continuous space Jackson Champer1,2*, Joanna Zhao1, Samuel E. Champer1, Jingxian Liu1, Philipp W. Messer1* 1Department of Biological Statistics anD Computational Biology, 2Department of Molecular Biology anD Genetics, Cornell University, Ithaca, NY 14853 *CorresponDing authors: JC ([email protected]), PWM ([email protected]) ABSTRACT UnDerDominance gene Drive systems promise a mechanism for rapiDly spreaDing payloaD alleles through a local population while otherwise remaining confineD, unable to spreaD into neighboring populations due to their frequency-dependent Dynamics. Such systems coulD proviDe a new tool in the fight against vector-borne diseases by disseminating transgenic payloads through vector populations. If local confinement can inDeeD be achieveD, the decision-making process for the release of such constructs woulD likely be consiDerably simpler compareD to other gene Drive mechanisms such as CRISPR homing drives. So far, the confinement ability of underdominance systems has only been demonstrated in moDels of panmictic populations linkeD by migration. How such systems woulD behave in realistic populations where individuals move over continuous space remains largely unknown. Here, we stuDy several underdominance systems in continuous-space population models and show that their dynamics are drastically altered from those in panmictic populations. Specifically, we find that all underdominance systems we stuDied can fail to persist in such environments, even after successful local establishment. -
Simulating Natural Selection in Landscape Genetics
Molecular Ecology Resources (2012) 12, 363–368 doi: 10.1111/j.1755-0998.2011.03075.x Simulating natural selection in landscape genetics E. L. LANDGUTH,* S. A. CUSHMAN† and N. A. JOHNSON‡ *Division of Biological Sciences, University of Montana, Missoula, MT 59812, USA, †Rocky Mountain Research Station, United States Forest Service, Flagstaff, AZ 86001, USA, USA, ‡Department of Plant, Soil, and Insect Sciences and Graduate Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, MA 01003, USA Abstract Linking landscape effects to key evolutionary processes through individual organism movement and natural selection is essential to provide a foundation for evolutionary landscape genetics. Of particular importance is determining how spa- tially-explicit, individual-based models differ from classic population genetics and evolutionary ecology models based on ideal panmictic populations in an allopatric setting in their predictions of population structure and frequency of fixation of adaptive alleles. We explore initial applications of a spatially-explicit, individual-based evolutionary landscape genetics program that incorporates all factors – mutation, gene flow, genetic drift and selection – that affect the frequency of an allele in a population. We incorporate natural selection by imposing differential survival rates defined by local relative fitness values on a landscape. Selection coefficients thus can vary not only for genotypes, but also in space as functions of local environmental variability. This simulator enables coupling of gene flow (governed by resistance surfaces), with natural selection (governed by selection surfaces). We validate the individual-based simulations under Wright-Fisher assumptions. We show that under isolation-by-distance processes, there are deviations in the rate of change and equilibrium values of allele frequency.