Fixation of Nitrogen by Algae and Associated Organisms in Semi- Arid Soils: Identification and Characterization of Soil Organisms
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Natural Resource Condition Assessment for Stones River National Battlefield
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science Natural Resource Condition Assessment for Stones River National Battlefield Natural Resource Report NPS/STRI/NRR—2016/1141 ON THIS PAGE Native warm season grass, located south of Stones River National Battlefield visitor center Photograph by: Jeremy Aber, MTSU Geospatial Research Center ON THE COVER Karst topography in the cedar forest at the “Slaughter Pen,” Stones River National Battlefield Photograph by: Jeremy Aber, MTSU Geospatial Research Center Natural Resource Condition Assessment for Stones River National Battlefield Natural Resource Report NPS/STRI/NRR—2016/1141 Henrique Momm Zada Law Siti Nur Hidayati Jeffrey Walck Kim Sadler Mark Abolins Lydia Simpson Jeremy Aber Geospatial Research Center Department of Geosciences Middle Tennessee State University Murfreesboro, Tennessee 37132 February 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. The series supports the advancement of science, informed decision-making, and the achievement of the National Park Service mission. The series also provides a forum for presenting more lengthy results that may not be accepted by publications with page limitations. -
Biological Nitrogen Fixation Dr. Anuj Rani, Department of Botany, T.N.B
E- learning: B.Sc. Part-II, Botany Hons and Part-I Sub.] Biological Nitrogen Fixation Dr. Anuj Rani, Department of Botany, T.N.B. College, Bhagalpur Email: [email protected] Conversion of molecular nitrogen (N2) of the atmosphere into inorganic nitrogenous compounds such as nitrates or ammonia is called as nitrogen fixation. When this nitrogen fixation occurs through the agency of some living organisms, the process is called as biological nitrogen fixation in which atmospheric nitrogen is converted into ammonia. Not all the organisms have capacity to fix molecular nitrogen (N2) of the atmosphere. Only certain prokaryotic micro-organisms such as some free living bacteria, cyanobacteria (blue- green algae) and some of the prokaryotic micro- organisms in symbiotic association with other plants (mostly legumes) can fix atmospheric nitrogen. They can be grouped as follows: A. Free Living: 1. Autotrophic: (a) Aerobic e.g., some cyanobacteria (blue-green algae). All those blue-green algae which can fix atmospheric nitrogen usually contain heterocyst’s such as Nostoc, Anabaena, Tolypothrix, Aulosira, Calothrix etc. But all the heterocyst’s bearing blue-green algae may not be atm. nitrogen fixers. A few non- heterocystous blue-green algae such as Gloeotheca are also known to fix atm. N2. (b) Anaerobic e.g., certain bacteria such as Chromatium and Rhodospirillum. 2. Heterotrophic: (a) Aerobic e.g., certain bacteria such as Azotobacter, Azospirillum, Derxia and Beijerinckia. (b) Facultative e.g., certain bacteria such as Bacillus and Klebsiella. (c) Anaerobic e.g., certain bacteria such as Clostridium and Methanococcus. 1 B. Symbiotic: (a) Root Nodules of Leguminous Plants: Various types of bacteria called rhizobia associated with root nodules of legumes can fix atm. -
Cooperative Interactions in Niche Communities
fmicb-08-02099 October 23, 2017 Time: 15:56 # 1 ORIGINAL RESEARCH published: 25 October 2017 doi: 10.3389/fmicb.2017.02099 Cyanobacteria and Alphaproteobacteria May Facilitate Cooperative Interactions in Niche Communities Marc W. Van Goethem, Thulani P. Makhalanyane*, Don A. Cowan and Angel Valverde*† Centre for Microbial Ecology and Genomics, Department of Genetics, University of Pretoria, Pretoria, South Africa Hypoliths, microbial assemblages found below translucent rocks, provide important ecosystem services in deserts. While several studies have assessed microbial diversity Edited by: Jesse G. Dillon, of hot desert hypoliths and whether these communities are metabolically active, the California State University, interactions among taxa remain unclear. Here, we assessed the structure, diversity, and Long Beach, United States co-occurrence patterns of hypolithic communities from the hyperarid Namib Desert Reviewed by: by comparing total (DNA) and potentially active (RNA) communities. The potentially Jamie S. Foster, University of Florida, United States active and total hypolithic communities differed in their composition and diversity, with Daniela Billi, significantly higher levels of Cyanobacteria and Alphaproteobacteria in potentially active Università degli Studi di Roma Tor Vergata, Italy hypoliths. Several phyla known to be abundant in total hypolithic communities were *Correspondence: metabolically inactive, indicating that some hypolithic taxa may be dormant or dead. Thulani P. Makhalanyane The potentially active hypolith network -
Algal Toxic Compounds and Their Aeroterrestrial, Airborne and Other Extremophilic Producers with Attention to Soil and Plant Contamination: a Review
toxins Review Algal Toxic Compounds and Their Aeroterrestrial, Airborne and other Extremophilic Producers with Attention to Soil and Plant Contamination: A Review Georg G¨аrtner 1, Maya Stoyneva-G¨аrtner 2 and Blagoy Uzunov 2,* 1 Institut für Botanik der Universität Innsbruck, Sternwartestrasse 15, 6020 Innsbruck, Austria; [email protected] 2 Department of Botany, Faculty of Biology, Sofia University “St. Kliment Ohridski”, 8 blvd. Dragan Tsankov, 1164 Sofia, Bulgaria; mstoyneva@uni-sofia.bg * Correspondence: buzunov@uni-sofia.bg Abstract: The review summarizes the available knowledge on toxins and their producers from rather disparate algal assemblages of aeroterrestrial, airborne and other versatile extreme environments (hot springs, deserts, ice, snow, caves, etc.) and on phycotoxins as contaminants of emergent concern in soil and plants. There is a growing body of evidence that algal toxins and their producers occur in all general types of extreme habitats, and cyanobacteria/cyanoprokaryotes dominate in most of them. Altogether, 55 toxigenic algal genera (47 cyanoprokaryotes) were enlisted, and our analysis showed that besides the “standard” toxins, routinely known from different waterbodies (microcystins, nodularins, anatoxins, saxitoxins, cylindrospermopsins, BMAA, etc.), they can produce some specific toxic compounds. Whether the toxic biomolecules are related with the harsh conditions on which algae have to thrive and what is their functional role may be answered by future studies. Therefore, we outline the gaps in knowledge and provide ideas for further research, considering, from one side, Citation: G¨аrtner, G.; the health risk from phycotoxins on the background of the global warming and eutrophication and, ¨а Stoyneva-G rtner, M.; Uzunov, B. -
Adaptations of Cyanobacterium Nostoc Commune to Environ- Mental Stress: Comparison of Morphological and Physiological Markers
CZECH POLAR REPORTS 8 (1): 84-93, 2018 Adaptations of cyanobacterium Nostoc commune to environ- mental stress: Comparison of morphological and physiological markers between European and Antarctic populations after re- hydration Dajana Ručová1, Michal Goga1, Marek Matik2, Martin Bačkor1* 1Department of Botany, Institute of Biology and Ecology, Faculty of Science, University of Pavol Jozef Šafárik, Mánesova 23, 041 67 Košice, Slovakia 2Institute of Geotechnics, Slovak Academy of Sciences, Watsonova 45, 040 01 Košice, Slovakia Abstract Availability of water may influence activities of all living organisms, including cyano- bacterial communities. Filamentous cyanobacterium Nostoc commune is well adapted to wide spectrum of ecosystems. For this reason, N. commune had to develop diverse pro- tection strategies due to exposition to regular rewetting and drying processes. Few studies have been conducted on activities, by which cyanobacteria are trying to avoid water deficit. Therefore, the present study using physiological and morphological param- eters is focused on comparison between European and Antarctic ecotypes of N. commune during rewetting. Gradual increase of FV/FM ratios, as the markers of active PS II, demonstrated the recovery processes of N. commune colonies from Europe as well as from Antarctica after time dependent rehydration. During the initial hours of rewetting, there was lower content of soluble proteins in colonies from Antarctica in comparison to those from Europe. Total content of nitrogen was higher in European ecotypes of N. commune. Significantly higher frequency of occurrence of heterocysts in Antarctic ecotypes was observed. The heterocyst cells were significantly longer in Antarctic ecotypes rather than European ecotypes of N. commune. Key words: Antarctica, soluble proteins, cyanobacteria, chlorophyll fluorescence, heterocysts, nitrogen, James Ross Island DOI: 10.5817/CPR2018-1-6 ——— Received December 19, 2017, accepted April 4, 2018. -
Research Journal of Pharmaceutical, Biological and Chemical Sciences
ISSN: 0975-8585 Research Journal of Pharmaceutical, Biological and Chemical Sciences A Novel Approach to Enhancement of Poly-Β-Hydroxybutyrate Accumulation Aulosira Fertilissima by Mixotrophy And Chemohetertrophy. 1S Sirohi*, 2N Mallick, 3SPS Sirohi , 1PK Tyagi, and 1GD Tripathi. 1Department of Biotechnology, MIET Meerut-250005, India. 2Department of Agricultural and Food Engineering, IIT Kharagpur-721302, India. 3Kisan PG Collage Simbhaoli, Gaziabad, India. ABSTRACT Aulisira fertilissima, a unicellular cyanobacterium, produced poly-β-hydroxybutyrate (PHB) up to 5.4% (w/w) dry cells when grown photoautotrophically but 8.9% when grown mixotrophically with 0.2% (w/v) glucose and acetate after 24 days. Gas-exchange limitations under mixotrophy and chemoheterotrophy with 0.2% (w/v) acetate and glucose enhanced the accumulation up to 17–19% (w/w) dry cells, the value almost 4- fold higher with respect to photoautotrophic condition. These results revealed high potential of Aulisira fertilissima in accumulating PHB, an appropriate raw material for biodegradable and biocompatible plastic. PHB could be an important material for plastic and pharmaceutical industries. Keywords: chemoheterotrophy, mixotrophy, Aulosira fertilissima, poly-β-hydroxybutyrate *Corresponding author March – April 2015 RJPBCS 6(2) Page No. 1266 ISSN: 0975-8585 INTRODUCTION Infact, Polyhydroxyalkanoates (PHAs) are the polymers of hydroxyalkanoates, which has gained tremendous impetus in the recent years because of its biodegradable and biocompatible nature and can be produced from renewable sources. PHAs are accumulated as a carbon and energy storage material in various microorganisms usually under the condition of limiting nutritional elements such as N, P, S, O, or Mg [1] in the presence of excess carbon [2]. Many of these bacterial species produce the polymer up to 20% of the dry cell weight (dcw) and a few, such as, Ralstonia eutropha, now called as Wautersia eutropha, is capable of accumulating poly-β-hydroxybutyrate (PHB) up to almost 80% of the dcw [3]. -
Polyphasic Approach and Adaptative Strategies of Nostoc Cf. Commune (Nostocales, Nostocaceae) Growing on Mayan Monuments
Fottea 11(1): 73–86, 2011 73 Polyphasic approach and adaptative strategies of Nostoc cf. commune (Nostocales, Nostocaceae) growing on Mayan monuments M. RAMÍ R EZ a,b, M. HE R NÁNDEZ –MA R INÉ a, P. MATEO c, E. BE rr ENDE R O c & M. ROLDÁN d aFacultat de Farmàcia, Unitat de Botànica, Universitat de Barcelona, 08028 Barcelona, Spain bPosgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México cDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid, Spain dServei de Microscòpia, Universitat Autònoma de Barcelona, Edifici C, Facultat de Ciències, 08193 Bellaterra, Spain Abstract: An aerophytic Nostoc, from a Mayan monument, has been characterized by phenotypic and molecular approaches, and identified as a morphospecies ofNostoc commune. Phylogenetic analysis indicates that it belongs to a Nostoc sensu stricto clade, which contains strains identified asN. commune. Nostoc cf. commune is found in two close areas: Site I (protected from direct sunlight by a wall), where it forms biofilms on mortar with Trentepohlia aurea; and Site II, where it grows on exposed stucco with the accompanying organism Scytonema guyanense. Over the year, in a habitat dictated by alternating wet and dry seasons, the organisms vary in appearance. Its life cycle comprises two seasonally–determined developmental stages (growth during the wet season and dormancy during the dry season) and two transitional stages (preparation for the dry season, and rehydration and recovery). At the beginning of the wet season the resistant stages from the previous dry season are rehydrated and form propagula, that adopt a colonial shape surrounded by a gelatinous sheath. -
Complete Genomes of Symbiotic Cyanobacteria Clarify the Evolution of Vanadium-Nitrogenase
GBE Complete Genomes of Symbiotic Cyanobacteria Clarify the Evolution of Vanadium-Nitrogenase Jessica M. Nelson1,2,†,DuncanA.Hauser1,2,†,JoseA.Gudi no~ 3,YesseniaA.Guadalupe3,JohnC.Meeks4, Noris Salazar Allen3, Juan Carlos Villarreal3,5,andFay-WeiLi1,2,* 1Boyce Thompson Institute, Ithaca, New York 2Plant Biology Section, Cornell University, Ithaca, New York 3Smithsonian Tropical Research Institute, Panama City, Panama 4Department of Microbiology and Molecular Genetics, University of California, Davis, California 5Department of Biology, Laval University, Quebec City, Quebec, Canada †These authors contributed equally to this work. *Corresponding author: E-mail: fl[email protected]. Accepted: June 24, 2019 Data deposition: This project has been deposited at NCBI BioProject under the accession PRJNA534312. Abstract Plant endosymbiosis with nitrogen-fixing cyanobacteria has independently evolved in diverse plant lineages, offering a unique window to study the evolution and genetics of plant–microbe interaction. However, very few complete genomes exist for plant cyanobionts, and therefore little is known about their genomic and functional diversity. Here, we present four complete genomes of cyanobacteria isolated from bryophytes. Nanopore long-read sequencing allowed us to obtain circular contigs for all the main chromosomes and most of the plasmids. We found that despite having a low 16S rRNA sequence divergence, the four isolates exhibit considerable genome reorganizations and variation in gene content. Furthermore, three of the four isolates possess genes encoding vanadium (V)-nitrogenase (vnf), which is uncommon among diazotrophs and has not been previously reported in plant cyanobionts. In two cases, the vnf genes were found on plasmids, implying possible plasmid-mediated horizontal gene transfers. Comparative genomic analysis of vnf-contain- ing cyanobacteria further identified a conserved gene cluster. -
Morphology & Ecology of Selected BGA (Aulosira, Tolypothrix
International Journal of General Me dicine and Pharmacy (IJGMP) ISSN(P): 2319 - 3999; ISSN( E ): 2319 - 4006 Vol. 5, Issue 3 , Apr - Ma y 2016; 37 - 46 © IASET MORPHOLOGY & ECOLOGY OF SELECTED BGA ( AULOSIRA, TOLYPOTHRIX, ANABAENA, NOSTOC) ANIL KUMAR SINGH 1 , A. P. SINGH 2 , NAVEEN GAURAV 3 , ABHISHEKH SRIVASTAVA 4 & ARUN KUMAR 5 1 Research Scholar of A.P.S. University, Rewa, M.P, India 2 Department of Botany Gov ernmen t P.G. Science College, Rewa, M.P , India 3,5 Assistant Professor , Department of Biotechnology, S G R R P G College Dehradun, U.K , India 4 Assistant Professor, Department of Botany Govt. S.V. College Teonthar, M.P , India ABSTRACT The cyanobacteria are an ancient group of prokaryotic organisms that are found all over the world in environments as diverse as Antarctic soils and volcanic hot springs, and often where no other vegetation can exist. Being prokaryotes they share with others of their type the lack of a nucleus and a laminated extracellular wall. Unlike photosynthetic bacteria however, cyanobacteria possess chlorophyll - a in common with photosynthetic eukaryotes, and they liberate oxygen during photosynthesis. Cyanobacteria are ubiquitous in waters of a great range of salinity and temperature, and they occur in and on the soil as well as on rocks and i n their fissures. As well, they form symbiotic and commensal relationships with a number of other organisms. In general, they are most abundant from waters with a neutral or slightly alkaline pH and can exhibit diurnal variation in abundance in waters with low buffering capacity . -
Abstract Phylogenetic Analysis of the Symbiotic
ABSTRACT PHYLOGENETIC ANALYSIS OF THE SYMBIOTIC NOSTOC CYANOBACTERIA AS ASSESSED BY THE NITROGEN FIXATION (NIFD) GENE by Hassan S. Salem Members of the genus Nostoc are the most commonly encountered cyanobacterial partners in terrestrial symbiotic systems. The objective of this study was to determine the taxonomic position of the various symbionts within the genus Nostoc, in addition to examining the evolutionary relationships between symbiont and free-living strains within the genus by analyzing the complete sequences of the nitrogen fixation (nif) genes. NifD was sequenced from thirty-two representative strains, and phylogenetically analyzed using the Maximum likelihood and Bayesian criteria. Such analyses indicate at least three well-supported clusters exist within the genus, with moderate bootstrap support for the differentiation between symbiont and free-living strains. Our analysis suggests 2 major patterns for the evolution of symbiosis within the genus Nostoc. The first resulting in the symbiosis with a broad range of plant groups, while the second exclusively leads to a symbiotic relationship with the aquatic water fern, Azolla. PHYLOGENETIC ANALYSIS OF THE SYMBIOTIC NOSTOC CYANOBACTERIA AS ASSESSED BY THE NITROGEN FIXATION (NIFD) GENE A Thesis Submitted to the Faculty of Miami University in partial fulfillment of the requirements for the degree of Master of Science Department of Botany by Hassan S. Salem Miami University Oxford, Ohio 2010 Advisor________________________ (Susan Barnum) Reader_________________________ (Nancy Smith-Huerta) -
Nitrogen Fixation by the Cyanobacterium Nostoc Punctiforme in Response to Variation in Nitrogen Availability, Temperature, and Atmospheric CO2 Concentrations" (2014)
Western University Scholarship@Western Electronic Thesis and Dissertation Repository 8-11-2014 12:00 AM Nitrogen fixation yb the cyanobacterium Nostoc punctiforme in response to variation in nitrogen availability, temperature, and atmospheric CO2 concentrations Danielle A. Griffith The University of Western Ontario Supervisor Dr. Zoë Lindo The University of Western Ontario Graduate Program in Biology A thesis submitted in partial fulfillment of the equirr ements for the degree in Master of Science © Danielle A. Griffith 2014 Follow this and additional works at: https://ir.lib.uwo.ca/etd Part of the Biology Commons, and the Terrestrial and Aquatic Ecology Commons Recommended Citation Griffith, Danielle A., "Nitrogen fixation by the cyanobacterium Nostoc punctiforme in response to variation in nitrogen availability, temperature, and atmospheric CO2 concentrations" (2014). Electronic Thesis and Dissertation Repository. 2309. https://ir.lib.uwo.ca/etd/2309 This Dissertation/Thesis is brought to you for free and open access by Scholarship@Western. It has been accepted for inclusion in Electronic Thesis and Dissertation Repository by an authorized administrator of Scholarship@Western. For more information, please contact [email protected]. NITROGEN FIXATION BY THE CYANOBACTERIUM NOSTOC PUNCTIFORME IN RESPONSE TO VARIATION IN NITROGEN AVAILABILITY, TEMPERATURE, AND ATMOSPHERIC CO2 CONCENTRATIONS Thesis format: Monograph by Danielle Alyce Griffith Graduate Program in Biology A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science The School of Graduate and Postdoctoral Studies The University of Western Ontario London, Ontario, Canada © Danielle A. Griffith 2014 Abstract The predominant input of available nitrogen (N) in boreal forest ecosystems originates from moss-associated cyanobacteria, which fix unavailable atmospheric N2, contribute to the soil N pool, and thereby support forest productivity. -
(Cyanobacterial Genera) 2014, Using a Polyphasic Approach
Preslia 86: 295–335, 2014 295 Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach Taxonomické hodnocení cyanoprokaryot (cyanobakteriální rody) v roce 2014 podle polyfázického přístupu Jiří K o m á r e k1,2,JanKaštovský2, Jan M a r e š1,2 & Jeffrey R. J o h a n s e n2,3 1Institute of Botany, Academy of Sciences of the Czech Republic, Dukelská 135, CZ-37982 Třeboň, Czech Republic, e-mail: [email protected]; 2Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, CZ-370 05 České Budějovice, Czech Republic; 3Department of Biology, John Carroll University, University Heights, Cleveland, OH 44118, USA Komárek J., Kaštovský J., Mareš J. & Johansen J. R. (2014): Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach. – Preslia 86: 295–335. The whole classification of cyanobacteria (species, genera, families, orders) has undergone exten- sive restructuring and revision in recent years with the advent of phylogenetic analyses based on molecular sequence data. Several recent revisionary and monographic works initiated a revision and it is anticipated there will be further changes in the future. However, with the completion of the monographic series on the Cyanobacteria in Süsswasserflora von Mitteleuropa, and the recent flurry of taxonomic papers describing new genera, it seems expedient that a summary of the modern taxonomic system for cyanobacteria should be published. In this review, we present the status of all currently used families of cyanobacteria, review the results of molecular taxonomic studies, descriptions and characteristics of new orders and new families and the elevation of a few subfamilies to family level.