Prof. Nermin GÖZÜKIRMIZI

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Prof. Nermin GÖZÜKIRMIZI Personal Information Office Phone: +90 212 455 5700 Extension: 1515101 EFmaxa iPl:h onenrem: i+n@90is 2ta1n2b 4u5l.e5d 5u8.t1r1 AWdedbr:e hstst:p :İ/.Ü/.aFveens .Fisatkaünlbteusl.ie, dMuo.tlre/knüelerrm Biniy/oloji ve Genetik Bölümü, 34134 Vezneciler-İstanbul Biography SNheer meninte Greodzu Dkeirpmariztim, secniet notfi fBico atadnvyis-oZro oalnodg yp rino fIesstasonrb uinl UIsntaivnebrusilt Uy niniv 1e9rs6i7ty a, wnda sg rbaodruna otend J uinn e1 91782, .1 S9h5e1 s itna rİztemdi ta, sT ua rPkheDy. (sPturdoef.n Dt ra.t E Dmeipnaer Btmilgeen)t , odfe Bfeontadneidc iann 1d9 G7e9n.etic, PhD thesis entitled: Effects of some chemicals and rays on Vicia faba 1Sh9e9 3s.t uPdroiefde sasto Dr eNpearrmtmine nGto ozuf kBiiromloizgiy w ino rIskteadn batu Dl Uenpiavretrmseitnyt a osf aMno alsescouclaiart eB iporlogfeys asonrd iGne 1n9e8ti5c sa snidn cbee 2ca0m03e. a professor in Plraonft. DBrio. tNeecrhmnoinlo Ggoyz Rueksiremarizcih i sU Anicta adte Mmaicr mMaerma bReers oeaf rIsctha nCbenutl rUen, Riveesresaitryc hsi nIncset i1tu9t7e2 o. Sf hGee ntoeotikc pEanrgti nfoere rEinstga banlisdhment of DBieoptaercthmneonlot gayt, I1s9ta9n2b-u2l0 U0n6i. vSehres iatyls. oH hera da raena sa cotfiv ree sreoaler cfho ri nthcleu deset apblalinsth tmisesnute ocfu Mltuorlec suylsatre Bmiso laongdy gaennde G terannestifcesr, gproalydmuaotrep lheivseml caonudr smeos lienc uthlaers em saurbkjeercst,s G.MO analysis and biosafety and epigenetics and gives undergraduate and aSnh ea uptehroforr omre cdo -loautst hoof rs toufd nieusm weirtohu dsi fsfceireenntitf ipcl apnatp sepres c(i7es0 )s uacnhd asse vbearalel yb, owohke caht,a ppotetarsto (e2s0, )c.i cHeerr, proepcelanrt, icnottetronna atinodn aslhlye is Sphueb lsisuhpeedr vsicsieedn t2if0ic M pSacp earnsd a 2r0e PrehlDat ethde tsoe sr,e atrnodt rhaenrs sptousdoennst,s g (eanses itsrtanst fperos faenssdo srasl,t a tsosloercaiantcee p.rofessors and professors) contribute valuable information to scientists in Turkey and other countries. Education Information Post Doctorate, TUhneiv Uernsiviter Dsi't'y A Omf iHenosu, sBtoionl,o Bgiyo Dloegpya Drtempeanrtm, Fernatn, cUen 1it9ed8 5S t-a 1te9s8 O5f America 1979 - 1980 UDnodcteorrgartaed, uİsattaen, bİsutla Ünbnuivle Ürnsiitveesri,s Fitaecsui, lFtya couf lStyc ioefn Sceci, eDnrc.eR,e Bro.Ntant, iTk-uZrokoelyo 1ji,9 T7u5r -k e1y9 719968 - 1972 FEnogrliesihg, nB2 L Uapnpgeru Iangteersmediate COtehretri, fTihcea tInetse,r nCaotiuonrasle Tsh eaonrditi cTarl Caoinurisneg osn genetics and Molecular Biology of Stress Tolerance in Plants, COMSTECH, EIDdBu caantido nT UMBaInTaAgKe-mMeRnCt- RanIGdE PBla, 2n0n0in1g, RFLP in Plant Breeding, ICGEB, 1991 CEodnusceartivoant iMona,n IaCgReOm-UeNntE aSnCdO -PUlaNnILn,i n1g9, 9A0pplications of cellular and Molecular Techniques to Plant Germplasm 1E9d8u5cation Management and Planning, Recent Developments in Biotechnology, The Instıtute for Biotechnological studies, Dissertations 1D9o7c9torate, Bazı Kimyasal Madde ve Işınların Vicia faba L. Üzerine Etkileri, Istanbul University, Botanik-Genetik, Genetik, Research Areas ELnifgei nSceieernincegs, ,G Beinootemchicnso, Nloagtyu,r Palla Sncti eBnioceteschnology, Molecular Biology and Genetics, Plant Molecular Genetics, Genetic APrcoafedsesomr,i Ics tTanitbluel sU n/i vTearssiktys, Faculty of Science, Moleküler Biyoloji ve Genetik Bölümü, 1993 - Continues Aİstcaandbuelm Üniciv aernsdite Asi,d Mmolienkiüsletr aBtiyivoleo jEi Vxep Geernieetnikc, 2e005 - 2009 Courses KBritokmi Doozokum K Büiyltoülroüji, sUi,n Udnedregrgardaudautea,t e2,0 21041 -3 2 -0 21051, 42,0 21051 -4 2 -0 21061, 52,0 21061 -6 2 -0 21071, 72017 - 2018 İTnesmane lG Geenneettiğiki, Undergraduate, 20163 - 20174, 20174 - 20185, 2016 - 2017, 2017 - 2018 BiİtTkKi İM MoOleLkEüKleÜrL BEiRyo BloİYjiOsiL vOeJ İGSeİ nVeEt iGğiE LNaEbToİrĞaİt uLaArB POrRoAjeTsUi,A PRo sPtRgrOaJdEuSİa, tPeo, 2st0g1r5a d- u2a0t1e,6 2, 021071 6- 2- 0210817 Dİşolekvtsoerla g Aelnaonm Dike,r Dsio, Dctoocrtaotrea, t2e0, 1240 1- 72 0- 1250,1 28015 - 2016, 2016 - 2017 Kİşrleovmsoelz ogemn oBmiyiokl,o Djiosicst,o Urnadtee, r2g0r1ad3u -a 2te0,1 240, 1250 1- 72 0- 126018 Bitkil eMroel eGkeünl eTrr aBniysofelor jYisöi,n Utenmdelerrgir, aPdousatgter,a 2d0u1a6te -, 20167 - 2017 SBeitmirimner P, Uronjdeesir, gUrnadeuragtera, 2d0u1at3e ,- 22001144 ,- 22001145 - 2015 DBiotkit oMroa lAeklaünle Dr eBrisyio, Dloojicstio vrea tGee, n2e0t1iğ4i -L 2ab0o1r5a, t2u0a1r5 P -r o2j0e1si6, Postgraduate, 2014 - 2015 Bİnitskain M Goelnekeütilğeir, UBniydoelrogjrisaid vuea Gtee, n2e0t1iğ4i L- a2b0o1r5a, t2u0a1r 5P r- o2j0es1i6, Postgraduate, 2013 - 2014 Bitkilered eG Rene kTormanbsinfearn Yt öPnrotetmeinle rÜir, ePtoimstig vraed İuzoaltaes, y2o0n1u4, -D 2o0c1to5rate, 2014 - 2015 İBNİTSAKNİ M GOELNEEKTÜİĞLİE, RU nBdİYerOgLrOaJdİuSİa tVeE, 2G0E0N9E -T 2İĞ0İ1 L0A, 2B0O1R0A -T 2U0A1R1 ,P 2R0O1J3E S-İ 2, P0o1s4tgraduate, 2011 - 2012, 2012 - 2013 BİTKİL DEORKDUE KRÜELKTOÜMRBÜİ,N UAnNdTe rPgRraOdTuEaİNte ,Ü 2R0E0T9İ M- 2İ 0V1E0 İ,Z 2O0L1A0S -Y 2O0N1U1, , D2o0c1t3o r-a 2te0,1 24009 - 2010, 2010 - 2011, 2011 - 2012, İ2Ş0L1E3V -S E2L0 1G4ENOMİK, Doctorate, 2012 - 2013 BKİRTOKMİ MOZOOLMEK BÜİLYEORL OBJİYSOİ, LUOnJdİSeİr, gUrnadeuragtera, 2d0u1at1e ,- 22000192 ,- 22001120 ,- 22001103 - 2011, 2013 - 2014 GBEitLirİmŞİeM P GroEjNesEiT, UİĞnİd, Uerngdreardguraatdeu, a2t0e0, 82 0- 1210 0- 92,0 21020, 92 0- 1220 1- 02,0 210310 - 2011, 2011 - 2012, 2012 - 2013 TBEİTMKEİLE GREEN GEETNİK T, URnAdNeSrFgErRad YuÖaNteT, E2M01L1E R- İ2, 0P1o2s,t g2r0a1d2u a- t2e0, 123009 - 2010, 2010 - 2011, 2013 - 2014 DBİETVKEİL MOOPLMEEKNÜTLAELR G BEİNYOELTOICJSİS, İU, nUdnedregrrgardaudautaet,e 2, 02081 2- 2- 02091,3 2009 - 2010, 2010 - 2011, 2012 - 2013 BİTKİ LDEORKDUE KRÜELKTOÜMRBÜİ,N UAnNdTer PgRraOdTuEaİtNe ,Ü 2R0E1T1İ M- 2İ 0V1E2 İ, Z2O0L1A2S -Y 2O0N1U3, Doctorate, 2011 - 2012, 2012 - 2013 BGİETNKEİL TERRAEN GSEFNER TSR TAON SPFLEARN TYSÖ N(ETREAMSLMEURSİ,) P, Poostsgtrgardaduuataet,e 2, 2001122 - -2 2001133 BİNİTSKAİN M GOELNEEKTÜİĞLİE, RU nBdİYeOrgLrOaJdİSuİa, tUen, 2d0e1rg1r -a d2u0a1t2e,, 22001121 -- 22001132 BİŞİLTEKVİ SMEOLL GEEKNÜOLMERİK B, İDYoOcLtoOrJİaStİe ,V 2E0 G0E8N - E2T0İ0Ğ9İ , L2A0B0O9R - A2T0U1A0R, 2 P0R1O0J -E 2Sİ0, 1P1ostgraduate, 2008 - 2009, 2009 - 2010, 2010 - T2E0M11EL GENETİK, Undergraduate, 2010 - 2011 KROMOZOM BİYOLOJİSİ, Undergraduate, 20089 - 200190, 2010 - 2011 AGÖdZvÜiKsIiRnMgI ZTIh Ne.,s Aerspa (Hordeum vulgare L. )’da Uzun Kodlama Yapmayan RNA’lar Üzerine Çalışmalar, Doctorate, GE.ÖKZaÜrlKıkI(RSMtuIZdIe nNt.), ,İ n2s0a1n8 Genomunda Retrotranspozon ve Endojen Retrovirüs Analizleri, Doctorate, B.Çakmak(Student), G20Ö1Z8ÜKIRMIZI N., TUZ STRESİ ALTINDA YETİŞTİRİLEN ARPA (Hordeum vulgare L.) BİTKİLERİNE GHÖOZMÜOKBIRMASIZSİIN NO.,S PTiEriRnOç'İtDe (EOTrKyİzSaİ, sDaoticvtao rLa.)t eG, DS.OM vaera tkrlaı(nSstpuodseonnt )a, n2a0l1iz6leri, Doctorate, G.Yüzbaşıoğlu(Student), 2016 KG.ÖBZeÜtüKl(IRStMuIdZeIn Nt).,, B2a0k1ı4r Stresi ve Brassinosteroidlerin Ayçiçeği (Helianthus anuus L.) üzerine etkileri, Postgraduate, GÖZÜKIRMIZI N., İAnrspaan'da S(HIRoTr6d eguemni nvduelg Yaarşel aLn.)m eanydao Bjeanğ lsıi rMeevyirduasn aan Gaelilzein, P Goesntgertaikd vuea tEep, Big.eÇnaektmika Dk(eSğtiuşdikelinktl)e,r 2, 0D1o4ctorate, GKÖ.ŞZaÜhiKnI(RSMtuIdZeI nNt.), ,A 2r0p1a4 ( Hordeum vulgare L. ) Doku kültüründe Sukkula retrotranspozon hareketlerinin belirlenmesi, Doctorate, G.KARTAL(Student), 2013 tGhÖrZoÜugKhIR AMgIrZoIb Nac., tGereinuemra –t imone doifa hteedr btricaindsef-otorlmeraatinotn t,o Dboactcoor(aNteic, oYt.iKaAnaY Ata(bSatucduemn)t )b, y2 0ex1p3ressing dehalogenase gene BGeÖlZirÜleKnImRMesIiZ, ID No.c, tAorrpaate (, HS.oYrıldmeauzm(S vtuldgeanrte) ,L 2.)0 D13oku Kültüründe Retrotranspozon Hareketlerinin ve Ürünlerinin gGeÖnZeÜtiKkI vReM eIpZiIg Nen., eDtoikk aun kaülilztülerrü, nPdoes ttgurza d(NuatCel,) A s.tDreEsMi İkRoKpIşRuAllNar(ıSntduad eyneti)ş, t2ir0il1e2n arpa ( Hordeum vulgare L. ) bitkilerinde GÖZÜKIRMIZI N., Aİnrspaan ( EHnodrodjeunm R evturlogvairreü sL .H) K(HülEtüRrV V-Ha)r'yınet Geleenroinmdiek TArnaanlsizpio, Pzonst gvrea Kdruoamteo, zMo.mGU ALnİYaElizVl(eSrti,u Pdoesnttg)r, a2d0u1a2te, GS.ÖMZAÜRKAIRKMLII(ZSIt uNd.,e Anrtp),a 2 (0 H12ordeum vulgare L. ) doku kültürlerinde Nikita retrotranspozonunun hareketleri, Postgraduate, GE.ÖBZAÜYKRIARMM(ISZtIu Nd.e, nAtr)p, a2 0D1o1ku Kültürlerinde Genetik ve Epigenetik Varyasyonlar, Doctorate, A.TEMEL(Student), 2011 HGÖ.HZAÜMKAIRTM(SItZuId Ne.n, At)n, t2ik0a1r1sinogenik antibiyotik epirubisinin in vitro bitki gelişimi üzerine etkileri, Doctorate, CG.ÖEZVÜRKEINRSMEILZ(IS Ntu.,d Aernpt)a, (2H0o1r0deum vulgare L.) Doku Kültürlerinde Transpozon Analizi, Postgraduate, GÖZÜKIRMIZI N., VTekn öyzuTmroumrtab oiklii zHlearsitnadlaer mınedtail aFsaykotönr a VnIaIlIi zGlerni ,B Pöolsgtegsriandinu aMteo,l eKk.ŞüAleHrİ TNa(nSıtsuıd, Denotc)t,o 2r0a1te0, M.AY(Student), G20Ö0Z8ÜKIRMIZI N., Brassinosteroidlerin arpa (Hordeum vulgare L.) üzerine sitogenetik etkileri, Postgraduate, GÖ.KZAÜRKTIARLM(ISZtIu Nde., nAtr)p, 2a0 (0H8ordeum vulgare )bitkisinde bakırın in vitro koşullarda kök gelişimi üzerine etkileri, GPoÖsZtÜgrKaIdRuMaItZeI, BN..E, YRrE1N0( SBtuuğddeanyt )(, T2r0it0ic7um aestivum L.) sarı pas (Puccinia striiformis) dayanıklılık geninin ekmeklik GbuÖğZdÜaKyI RçeMşItZleIr Nin.,d Kea tlaıtrsaanl mTraosmı, Pboosfitlginraind uMaotele, kAü.TleErM AEnLa(liSztiu, Ddeonct)o,r 2a0te0, 6B.DÖLEK(Student), 2004 İGnÖcZelÜeKnImReMsIi”Z, Iİ sNt.a, nDbouklu Ü Knüivlteürrsüitnedsie, PYoestitşgtriraidleuna tAer, pDa.Ö (ZHCoArNde(Sutmud veunlgt)a, r2e0 L0.3) Üzerine Bakırın (Cu+2) Etkilerinin DGÖocZtÜoKraIRteM, ZIZ.İIP NEK., ÇPİa(uSltouwdneniat
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  • RETROTRANSPOSON BASED MARKERS and THEIR APPLICATIONS in BARLEY (Hordeum Vulgare L.Cvs.) TISSUE CULTURE

    RETROTRANSPOSON BASED MARKERS and THEIR APPLICATIONS in BARLEY (Hordeum Vulgare L.Cvs.) TISSUE CULTURE

    PROCEEDINGS ______ The 5th International Symposium on Sustainable Development_______ ISSD 2014 RETROTRANSPOSON BASED MARKERS AND THEIR APPLICATIONS IN BARLEY (Hordeum vulgare L.cvs.) TISSUE CULTURE Nermin Gozukirmizi Istanbul University, Department of Molecular Biology and Genetics, 34134 Vezneciler, Istanbul/Turkey E-mail: [email protected] Abstract Barley has economical value and it is an important model plant. Transposons cover more than 80% of barley genome. More than 40 retrotransposons were characterized in barley genome. This type of transposons replicate via RNA and move in the genome. As a result of these movements, mutations and genome enlargements are occurred. During the recent years, active transcripts and protein products of some retrotransposons have been determined. Somaclonal variations are spontaneously occurred variations in tissue culture conditions. These variations could be produced by genetic and/or epigenetic mechanisms and result in problems in gen transfer applications. We investigated the retrotransposon movements in barley tissue culture and regenerated plantlets using inter retrotransposon amplified polymorphism (IRAP), inter primer binding side (iPBS) and analytical techniques (DNA and RNA levels) and determined the relationship between retrotransposon movements, changes in copy number and differention in culture conditions. For these purposes BARE1, NIKITA, BAGY2 and SUKKULA retrotransposons were analyzed. Our research results show that tissue culture conditions and time increase the transposon based variation and copy numbers of retrotransposons and thus, cause genome enlargements. This research will be contribute the understanding of basic mechanisms related to plant development and differentiation in cultured material and also restriction of variations in applications. Keywords: Barley, Tissue Culture, Retrotransposon markers, Somaclonal variation 1 | P a g e ISSD 2014 The 5th International Symposium on Sustainable Development_______ PROCEEDINGS 1.
  • Long Non-Coding Rnas

    Long Non-Coding Rnas

    Journal of Analytical & Pharmaceutical Research New Player of ncRNAs: Long Non-coding RNAs Abstract Mini Review Long non-coding RNAs (lncRNAs) play important roles in a wide range of biological processes as regulatory factors at the epigenetic, transcriptional and Volume 3 Issue 4 - 2016 of lncRNAs discoveries including their identification, classifications and functions. post- transcriptional levels. In this review, we summarized the current knowledge 1Department of Biotechnology, Istanbul University, Turkey Keywords: Long non-coding RNAs; Discovery of lncRNAs; Classification of 2Department of Molecular Biology and Genetics, Istanbul University, Turkey lncRNAs; Post- transcriptional levels; Epigenetic; Regulatory factors *Corresponding author: Nermin Gözükırmızi, Department of MolecularBiology and Genetics, Istanbul University, Faculty of Science, Istanbul, 34118 Vezneciler, Turkey, Email: Received: | Published: November 04, 2016 November 15, 2016 Introduction Novel lncRNAs can be detected and discovered by both The mechanism underlying the functions of non-protein coding RNAs (ncRNAs or npcRNAs) that have no or little protein-coding experimental (next generation sequencing, NGS, technologies) potential is a fascinating area of research [1]. Based on transcript microarrays.and computational Then, thescreenings transcripts [33-35]. sequences First, are the mapped fragments to the of transcripts are obtained by using NGS technologies or tilling The criteria for discriminating between coding and non-coding length, ncRNAs are classified as short (<200 nt) and long ncRNAs as cDNA/EST in silico mining, whole-genome tilling array and sequencesreference genome of RNAs and are identified based on transcribed similarity unitsto known of the codingRNAs. (lncRNAs; >200 nt). The recent high-throughput analysis such RNA-sequencing (RNA-seq) has revealed that the transcription sequences or statistics of codon frequencies for coding potential landscape in eukaryotes is much more complex than had been to[36].
  • Prof.Dr. Nermin GÖZÜKIRMIZI

    Prof.Dr. Nermin GÖZÜKIRMIZI

    Prof.Dr. Nermin GÖZÜKIRMIZI Kişisel Bilgiler İş Telefonu: +90 212 455 5700 Dahili: 1515101 EF-apxo Tsetale: fnoenrum:i n+@9i0s t2a1n2b u4l5.e5d u5.8tr11 PWoesbta: hAtdtpr:e//sai:v İe.Üs..iFsteann Fbaukl.üedltues.tir, /Mnoelremküinle/r Biyoloji ve Genetik Bölümü, 34134 Vezneciler-İstanbul Biyografi Prof.Dr.Nermin Gözükırmızı, İstanbul Üniversitesi Profesörü, İzmit, Türkiye'de 18 Haziran 1951 tarihinde doğdu. A19n6ab7i lyimılın Ddaal ıg'nirddai ğPi rİostfa. Dnbr.u El mÜninivee Brsiligtes’ni iBno dtaonkitko-rZao öoğlorjei nBcöislüi omlaürnadke bna 1ş9la7d2ığ yı ıdlınodktao mrae çzaulnış omldalua r vıneı P rBooft.Danri.Nk evbea Gheantetik ıYşaınklaarr-ıTna ent kyiölenrei’tdimiri. nde 1979 yılında tamamladı. Doktora tezi başlığı: Vicia faba üzerine bazı kimyasal maddelerin ve 1 985 İstanbul Üniversitesi Biyoloji Bölümü'e doçent olarak atandı ve 2003 yılından itibaren akademik çalışmalarını Moleküler Biyoloji ve Genetik Bölümünde sürdürmektedir ve 1993 yılında profesör ünvanını almıştır. 1N9e9rm2-i2n0 G0ö6z Büiktıkrim Bıizyıo TtÜekBnİToAloKji, A Mraşrtmıramra BAirraimştıirnmina vMee İrsktaenzib, uGle Ünn Mivüehresintedsisi lMiğoi vleek Bülieyro tBeikynoololojij iv Ae rGaeşntıermtika BEönlsütmitülesrüi,nin P koulrimulomrafiszımnd vae aMkotilfe gköürleerv malamrkışetrırla. Ar,r GaDştOır manaa alilzain vlea rbı;i yGoe-ngeütvike,n Bliikt kvie d Eopkiug eknüelttüikr üo lsairsatekm talenrıim vlea nGaebni ltir.a nLsisfearnis, ve lisansüstü düzeyinde dersler vermektedir. bAirlipmas, eblu mğdaakya,l ep a(t7a0te) sv, en okihtaupt, bkaövlüamk, lperaimniunk
  • 2 2019 Issue / Sayı: 3

    2 2019 Issue / Sayı: 3

    Volume / Cilt: 2 2019 Issue / Sayı: 3 Editor in Chief / Baş Editör Assit. Prof. Dr. Yilmaz Kaya, Department of Agricultural Biotechnology Ondokuz Mayis University, Turkey Editorial Boards/ Editör Kurulu Fahrul Zaman Huyop, Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, Malaysia, Ismail Kocaçalışkan, Department of Molecular Biology and Genetics, Yildiz Technical University, Turkey Ercan Bursal, Department of Nursing Science, Muş Alparslan University, Turkey Nermin Gozukirmizi, Department of Molecular Biology and Genetics, Istinye University, Turkey Azzmer A. Abdul Hamid, Department of Biotechnology, International Islamic University Malaysia, Malaysia Muhammet Kurulay, Department of Mathematics Engineering, Yıldız Technical University, Turkey Ertan Ermis, Department of Food Engineering, Istanbul S. Zaim University, Turkey Mohamed Faraj Edbeib, Department of Animal Production, Faculty of Agriculture, Baniwalid University, Libya Ali Yuksek, Department of Islamic Law, Ondokuz Mayıs University, Turkey Hasan Murat Aksoy, Department of Plant Protection, Ondokuz Mayıs University, Turkey Ayşe Feyza Tufan, Department of Molecular Biology and Genetics, Halic University, Turkey Muhammed Yüceer, Department of Food Processing, Çanakkale Onsekiz Mart University, Turkey Sevgi Marakli, Department of Medical Techniques and Services, Amasya University, Turkey Sibel Yilmaz, Department of Molecular Biology and Genetics, Yeni Yüzyıl University, Turkey, Sahin Ozel, Department of Chemistry, Bursa Uludağ University, Turkey Kasım
  • Editor in Chief / Baş Editör Asst. Prof. Dr. Yilmaz Kaya Ondokuz Mayis University, Turkey

    Editor in Chief / Baş Editör Asst. Prof. Dr. Yilmaz Kaya Ondokuz Mayis University, Turkey

    Volume / Cilt: 3 2020 Issue / Sayı: 2 Editor in Chief / Baş Editör Asst. Prof. Dr. Yilmaz Kaya Ondokuz Mayis University, Turkey Section Editors / Bölüm Editörleri* * sıralama akademik unvan içinde alfabetik sıralamaya göredir. * The ranking is arranged alphabetically within the academic title. Prof. Dr. Ali ASLAN, PhD, Van Yuzuncuyıl University Prof. Dr. Ercan BURSAL, PhD, Muş Alparslan University Prof. Dr. Hasan AKAN, PhD, Harran University Prof. Dr. Nermin GOZUKİRMIZİ, PhD Istinye University Prof. Dr. Tengku Haziyamin TENGKU ABDUL HAMİD, PhD, International Islamic University Malaysia Assoc. Prof. Dr. Ayhan HORUZ, PhD Ondokuz Mayıs University Assoc. Prof. Dr. Hasan Murat AKSOY, PhD, Ondokuz Mayıs University Editorial Board / Editör Kurulu Prof. Dr. İsmail KOCAÇALIŞKAN, PhD, Yildiz Technical University Prof. Dr. Muhammet KURULAY, PhD, Yildiz Technical University Assoc. Prof. Dr. Gulbubu KURMANBEKOVA, Kyrgyz-Turkish Manas University Assoc. Prof. Dr. İsmail ERPER, PhD, Ondokuz Mayıs University Assoc. Prof. Dr. Muhammad Arshad JAVED, PhD, Universiti Teknologi Malaysia Assoc. Prof. Dr. Roswanira AB. WAHAB, PhD, Universiti Teknologi Malaysia Assoc. Prof. Dr. Sevgi MARAKLI, PhD, Amasya University Asst. Prof. Dr. Abdussamat GÜZEL, PhD, Inonu University Asst. Prof. Dr. Ali Yuksek, PhD, Ondokuz Mayıs University Asst. Prof. Dr. Cihan İNAN, PhD, Karadeniz Technical University Asst. Prof. Dr. Ertan ERMİŞ, PhD, Istanbul Sabahattin Zaim University Asst. Prof. Dr. Feyza TUFAN, PhD, Halic University Asst. Prof. Dr. Harun ÖZER, PhD, Ondokuz Mayıs University Asst. Prof. Dr. Kasım TAKIM, PhD, Harran University Asst. Prof. Dr. Mohamed EDBEİB, PhD, Baniwalid University, Libya Asst. Prof. Dr. Muhammed YÜCEER, PhD, Canakkale Onsekiz Mart University, Dr. Aliyu ADAMU, PhD, Kaduna State University Dr. Lect. Abdulgani DEVLET, PhD, Bilecik Seyh Edebali University Dr.
  • 211 Nikita Retrotransposon Movements in Callus Cultures of Barley (Hordeum Vulgare

    211 Nikita Retrotransposon Movements in Callus Cultures of Barley (Hordeum Vulgare

    POJ 5(3):211-215 (2012) ISSN:1836-3644 Nikita retrotransposon movements in callus cultures of barley (Hordeum vulgare L.) Emre Bayram, Sibel Yilmaz, Halide Hamat-Mecbur, Gonul Kartal-Alacam, Nermin Gozukirmizi* Istanbul University, Faculty of Science, Department of Molecular Biology and Genetics, 34134, Vezneciler, Istanbul-TURKEY *Corresponding author: [email protected] Abstract Retrotransposons are dynamic elements of the genome and exist in high percentages in the genome of many organisms. However, the majority of retrotransposons are inactivated during development by different mechanisms such as methylation. Some stress conditions may have a stimulating effect on the activation of retrotransposons. In vitro culture conditions can be considered as one of these stress factors due to nutrients, chemicals, physical factors and photoperiods. In this study, Nikita retrotransposon polymorphism was investigated on different calli ages (30-, 60- and 90-day-old) of barley, which developed from the same embryo on MS medium supplemented with 3 mg/L 2,4-D. Mature barley embryos (Hordeum vulgare L. cv. Zafer-160) were cultured for callus formation and sub-cultured every 30 days. Three experiment sets were constructed to determine the polymorphism between individual calli originated from different embryos in the same culture time. Polymorphism was detected using Inter-Retrotransposon Amplified Polymorphism (IRAP) technique with two different Nikita specific forward primers. Three mature embryos were used as control. In total, 20 homomorphic PCR bands were obtained from both reactions in intact embryos. However, some polymorphic bands (~ 550 and 650 bp) were solely observed in calli. Our results showed that tissue culture conditions caused the movement of Nikita retrotransposon at different ages of calli that originated from the same embryo and at the same time.
  • Nermin Gözükırmızı 2. Date of Birth : 18.06.1951 3

    Nermin Gözükırmızı 2. Date of Birth : 18.06.1951 3

    1.Name Surname : Nermin Gözükırmızı 2. Date of Birth : 18.06.1951 3. Title : Prof.Dr. 4. State of Education : Prof.Dr. 5. Current Institution : Istinye University Education: BSc. Istanbul University, Faculty of Science, Botany- Zoology, Istanbul, 1972. Ph.D. University of Istanbul, Science Faculty, Department of Botany and Genetics, Istanbul 1979. Dissertation Title: “Effects of some chemicals and rays on Vicia faba”. Assoc. Prof. 1985, University of Istanbul, Science Faculty, Department of Molecular Biology and Genetics Prof. 1992-2018, University of Istanbul, Science Faculty, Department of Molecular Biology and Genetics 6. Academic Appointments Academic Member of Istinye University, Head of Molecular Biology and Genetics Department since September, 2018. Academic Member of Istanbul University since 1972 -2018 June. Bioscience and Biomedical Engineering Faculty, Department of Biosciences and Bioengineering, University Technology, Malaysia, 21.04.2013 - 28.04.2013 The Scientific and Technological Research Council of Turkey , Research Institutes of Genetics Engineering & Biotechnology, Group leader, 1992-2006. Visiting Scientist: Houston University, Biology Dept. 1979-1980. 7. Research Interest: Transposons, Endogenous retroviruses, Long non-coding RNAs Epigenetics, Plant Biotechnology 8. Research Projects and Activities 1. NATO-TU “Biotechnology-Establishment and Promotion of New Biotechnological Techniques in Turkey” Establishment of Tissue Culture and Gene Transfer Systems in Barley 1991-1994. 2. NATO -TU Biotech; "Monoclonal Antibodies- Modification by recombinant DNA Technology and Exploitation", 1994-1998. 3. Plant Biotechnology (TUBITAK)1992-2000 4. Paulownia Tissue Culture and Propagation (TEKNOGEN Comp.)2000 5. Development of Biotechnologicaly Improved Poplar Clones, (Turkish Paper and Pulp Industries)1996-2000. 6. Eureka Cereal Stresstol-1322, 1996-2003. 7. Cotton tissue culture, gene transfer and fiber improvement (Turkish Textile Foundation), 2002-2006.