Small-Scale Heterogeneity in Deep-Sea Nematode Communities Around Biogenic Structures
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Tribal Classification and Phylogeny of Geometrinae (Lepidoptera
Zoological Journal of the Linnean Society, 2018, 184, 653–672. With 2 figures. Tribal classification and phylogeny of Geometrinae Downloaded from https://academic.oup.com/zoolinnean/article-abstract/184/3/653/4996193 by Institute of Zoology, CAS user on 05 November 2018 (Lepidoptera: Geometridae) inferred from seven gene regions XIAOSHUANG BAN1,2,†, NAN JIANG1,†, RUI CHENG1,†, DAYONG XUE1 AND HONGXIANG HAN1,* 1Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, No. 1 Beichen West Road, Chaoyang District, Beijing 100101, China 2University of Chinese Academy of Sciences, 19A Yuquan Road, Shijingshan District, Beijing 100049, China Received 30 September 2017; revised 18 January 2018; accepted for publication 27 February 2018 Despite recent progress in the molecular systematics of Geometridae, phylogenetic relationships within the sub- family Geometrinae remain largely unexplored. To infer the relationships among tribes, we performed a molecular phylogenetic analysis of Geometrinae based on 116 species representing 17 of the 18 recognized tribes, mainly from the Palaearctic and Oriental regions. Fragments of one mitochondrial and six nuclear genes were sequenced, yielding a total of 5805 bp of nucleotide data. Maximum likelihood and Bayesian analyses yielded largely congruent results. The monophyly of Geometrinae and most recognized tribes is supported. We present a new phylogenetic classifica- tion for Geometrinae composed of 13 tribes, two of which are proposed here as new: Ornithospilini trib. nov. and Agathiini trib. nov. A broad concept of Hemitheini is presented by the inclusion of nine subtribes, with Thalerini as a new synonym of Hemitheiti. The close relationship among Nemoriini, Synchlorini and Comibaenini, and the sister relationship between Timandromorphini and Geometrini is well supported. -
Geometridae: Geometrinae): a Review of the Genera
Blackwell Publishing LtdOxford, UKZOJZoological Journal of the Linnean Society0024-4082© 2007 The Linnean Society of London? 2007 1502 343412 Original Article GENERA OF PSEUDOTERPNINIL. M. PITKIN ET AL. Zoological Journal of the Linnean Society, 2007, 150, 343–412. With 162 figures Moths of the tribe Pseudoterpnini (Geometridae: Geometrinae): a review of the genera LINDA M. PITKIN1, HONGXIANG HAN2 and SHAYLEEN JAMES1* 1Department of Entomology, Natural History Museum, Cromwell Road, London SW75BD, UK 2Institute of Zoology, Chinese Academy of Sciences, Beijing, China Received May 2006; accepted for publication August 2006 The classification of the genera of the widely distributed Old World tribe Pseudoterpnini is reviewed and 34 genera are recognized. Two new generic synonyms (Sterictopsis Warren and Oxyphanes Turner as synonyms of Rhuma Walker), and 21 new or reinstated combinations are established. Representative moths of all the genera are illus- trated in colour (upper side and underside), and genitalia of all genera are illustrated in monochrome (162 figures). All the known species and subspecies of Pseudoterpnini are listed (321), together with their synonyms. The Pseudot- erpnini and their characters are assessed, and many genera are newly assigned to the tribe. © 2007 Natural His- tory Museum, London. Journal compilation © 2007 The Linnean Society of London, Zoological Journal of the Linnean Society, 2007, 150, 343–412. ADDITIONAL KEYWORDS: Afrotropical Region – Australasian Region – China – Lepidoptera – Oriental Region – Palaearctic -
Hamid R Ghanavi
Using big data to understand evolutionary patterns in Geometridae and Erebidae, the two most diverse families of Lepidoptera Ghanavi, Hamid 2020 Link to publication Citation for published version (APA): Ghanavi, H. (2020). Using big data to understand evolutionary patterns in Geometridae and Erebidae, the two most diverse families of Lepidoptera. Lund University, Faculty of Science. Total number of authors: 1 General rights Unless other specific re-use rights are stated the following general rights apply: Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal Read more about Creative commons licenses: https://creativecommons.org/licenses/ Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. LUND UNIVERSITY PO Box 117 221 00 Lund +46 46-222 00 00 Using big data to understand evolutionary patterns in Geometridae and Erebidae, the two most diverse families of Lepidoptera HAMID REZA GHANAVI DEPARTMENT OF BIOLOGY | FACULTY OF SCIENCE | LUND UNIVERSITY List of papers I. Murillo-Ramos L, Brehm G, Sihvonen P, Hausmann A, Holm S, Ghanavi HR, Õunap E, Truuverk A, Staude H, Friedrich E, Tammaru T, Wahlberg N. -
Lepidoptera) with a Focus on Enigmatic Small Subfamilies
A comprehensive molecular phylogeny of Geometridae (Lepidoptera) with a focus on enigmatic small subfamilies Leidys Murillo-Ramos1,2, Gunnar Brehm3, Pasi Sihvonen4, Axel Hausmann5, Sille Holm6, Hamid Reza Ghanavi2, Erki Õunap6,7, Andro Truuverk8, Hermann Staude9, Egbert Friedrich10, Toomas Tammaru6 and Niklas Wahlberg2 1 Grupo Biología Evolutiva, Department of Biology, Universidad de Sucre, Sincelejo, Sucre, Colombia 2 Systematic Biology Group, Department of Biology, Lund University, Lund, Sweden 3 Institut für Zoologie und Evolutionsbiologie, Phyletisches Museum, Jena, Germany 4 Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland 5 Staatliche Naturwissenschaftliche Sammlungen Bayerns, München, Germany 6 Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia 7 Estonian University of Life Sciences, Institute of Agricultural and Environmental Sciences, Tartu, Estonia 8 Natural History Museum, University of Tartu, Tartu, Estonia 9 LepsocAfrica, Magaliesburg, South Africa 10 Berghoffsweg 5, Jena, Germany ABSTRACT Our study aims to investigate the relationships of the major lineages within the moth family Geometridae, with a focus on the poorly studied Oenochrominae- Desmobathrinae complex, and to translate some of the results into a coherent subfamilial and tribal level classification for the family. We analyzed a molecular dataset of 1,206 Geometroidea terminal taxa from all biogeographical regions comprising up to 11 molecular markers that includes one mitochondrial (COI) and Submitted 6 February 2019 Accepted 1 July 2019 10 protein-coding nuclear gene regions (wingless, ArgK, MDH, RpS5, GAPDH, IDH, Published 27 August 2019 Ca-ATPase, Nex9, EF-1alpha, CAD). The molecular data set was analyzed using Corresponding authors maximum likelihood as implemented in IQ-TREE and RAxML. -
299823 Hamid Ghanavi
Using big data to understand evolutionary patterns in Geometridae and Erebidae, the two most diverse families of Lepidoptera HAMID REZA GHANAVI DEPARTMENT OF BIOLOGY | FACULTY OF SCIENCE | LUND UNIVERSITY List of papers I. Murillo-Ramos L, Brehm G, Sihvonen P, Hausmann A, Holm S, Ghanavi HR, Õunap E, Truuverk A, Staude H, Friedrich E, Tammaru T, Wahlberg N. 2019. A comprehensive molecular phylogeny of Geometridae (Lepidoptera) with a focus on enigmatic small subfamilies. PeerJ 7:e7386 DOI 10.7717/peerj.7386 II. Ghanavi HR, Chazot N, Sanmartín I, Murillo-Ramos L, Duchêne S, Sihvonen P, Brehm G, Wahlberg N. 2020. Biogeography and Diversification Dynamics of the Moth Family Geometridae (Lepidoptera). Manuscript. III. Ghanavi HR, Twort V, Zahiri R, Wahlberg N. 2020. Phylogenomics of Erebidae (Lepidoptera): using old DNA extracts to resolve old phylogenetic questions with whole genome sequencing. Manuscript. IV. Ghanavi HR, Twort V, Hartman T, Zahiri R, Wahlberg N. 2020. The accuracy of mitochondrial genomes for family level phylogenies, the case of erebid moths (Lepidoptera; Erebidae). Manuscript. V. Ghanavi HR, Twort V, Duplouy A. 2020. Exploring nonspecific/bycatch diversity of organisms in whole genome sequencing of Erebidae moths (Lepidoptera). Manuscript. Faculty of Science 956425 Department of Biology 789178 ISBN 978-91-7895-642-5 9 Using big data to understand evolutionary patterns in Geometridae and Erebidae, the two most diverse families of Lepidoptera Hamid Reza Ghanavi DOCTORAL DISSERTATION by due permission of the Faculty of Science, Lund University, Sweden. To be defended at Blå hallen, Ekologihuset, Sölvegatan 37, Lund. On Friday 9th October 2020, at 13h00. Faculty opponent Dr Dimitar Dimitrov Uviversity Museum of Bergen, Norway Organization Document name Doctoral Dissertation LUND UNIVERSITY Date of issue October 2020 Department of Biology Systematic Biology Group Ecology Building SE-22362, Lund. -
Zootaxa, a Taxonomic Review of Pachyodes
Zootaxa 1759: 51–68 (2008) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2008 · Magnolia Press ISSN 1175-5334 (online edition) A taxonomic review of Pachyodes GuenJe, 1858, with descriptions of two new species (Lepidoptera: Geometridae, Geometrinae) HONGXIANG, HAN1 & DAYONG, XUE2,3 Institute of Zoology, Chinese Academy of Sciences, Beijing 100101 China. E-mail: [email protected]; [email protected] 3Corresponding author Abstract The genus Pachyodes Guenée, 1858 is reviewed, and two new species are described: P. novata, sp. nov., from South China and P. jianfengensis, sp. nov., from Hainan Province, China. The six previously known species are redescribed, and a lectotype is designated for P. pratti (Prout, 1927). Illustrations of adults and genitalia are presented. The holotype and paratypes of the new species are deposited in the Institute of Zoology, Chinese Academy of Sciences, Beijing, China. Key words: Geometrinae, Pachyodes, new species, taxonomy, China Introduction The genus Pachyodes was erected by Guenée, 1858 based on Pachyodes almaria Guenée, 1858, which is a junior synonym of Pachyodes haemataria (Herrich-Schäffer, 1854). Pachyodes is the oldest available name for species previously referred to the genus Terpna Herrich-Schäffer (Holloway 1996). Prout’s (1912, 1927) concept of Pachyodes was very broad and included seven subgenera under its previous name Terpna: Callere- mites Warren, Psilotagma Warren, Absala Swinhoe, Pachyodes Guenée, Pachista Prout, Lophophelma Prout and Dindicodes Prout. Holloway (1996) treated Pachyodes as a member of Pseudoterpnini Warren and re- examined the entire group based on genitalic characters. He separated the subgenera from Pachyodes and ele- vated them to genera.