Targeting Oncogenic Notch Signaling with SERCA Inhibitors Luca Pagliaro, Matteo Marchesini and Giovanni Roti*
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Plasma Membrane Ca2+–Atpase in Rat and Human Odontoblasts Mediates Dentin Mineralization
biomolecules Article Plasma Membrane Ca2+–ATPase in Rat and Human Odontoblasts Mediates Dentin Mineralization Maki Kimura 1,†, Hiroyuki Mochizuki 1,†, Ryouichi Satou 2, Miyu Iwasaki 2, Eitoyo Kokubu 3, Kyosuke Kono 1, Sachie Nomura 1, Takeshi Sakurai 1, Hidetaka Kuroda 1,4,† and Yoshiyuki Shibukawa 1,*,† 1 Department of Physiology, Tokyo Dental College, 2-9-18, Kanda-Misaki-cho, Chiyoda-ku, Tokyo 101-0061, Japan; [email protected] (M.K.); [email protected] (H.M.); [email protected] (K.K.); [email protected] (S.N.); [email protected] (T.S.); [email protected] (H.K.) 2 Department of Epidemiology and Public Health, Tokyo Dental College, Chiyodaku, Tokyo 101-0061, Japan; [email protected] (R.S.); [email protected] (M.I.) 3 Department of Microbiology, Tokyo Dental College, Chiyodaku, Tokyo 101-0061, Japan; [email protected] 4 Department of Dental Anesthesiology, Kanagawa Dental University, 1-23, Ogawacho, Kanagawa, Yokosuka-shi 238-8570, Japan * Correspondence: [email protected] † These authors contributed equally to this study. Abstract: Intracellular Ca2+ signaling engendered by Ca2+ influx and mobilization in odontoblasts is critical for dentinogenesis induced by multiple stimuli at the dentin surface. Increased Ca2+ is exported by the Na+–Ca2+ exchanger (NCX) and plasma membrane Ca2+–ATPase (PMCA) to Citation: Kimura, M.; Mochizuki, H.; maintain Ca2+ homeostasis. We previously demonstrated a functional coupling between Ca2+ Satou, R.; Iwasaki, M.; Kokubu, E.; extrusion by NCX and its influx through transient receptor potential channels in odontoblasts. Kono, K.; Nomura, S.; Sakurai, T.; Although the presence of PMCA in odontoblasts has been previously described, steady-state levels of Kuroda, H.; Shibukawa, Y. -
Crystal Structures of the Gastric Proton Pump Reveal the Mechanism for Proton Extrusion
Life Science Research Frontiers 2018 Research Frontiers 2018 Crystal structures of the gastric proton pump reveal the mechanism for proton extrusion After intaking food, the pH inside our stomach phosphorylation (P), and actuator (A) domains reaches around 1. This acidic environment, (Fig. 2(a)). The β-subunit has a single TM helix and generated by the gastric proton pump H+,K+-ATPase a large ectodomain with three of the six N-linked [1], is indispensable for food digestion and is also glycosylation sites visualized in the structure. The an important barrier to pathogen invasion via the electron density maps define the binding mode of oral route. However, excess stomach acidification vonoprazan (now available for clinical treatment) and induces ulcers, which considerably impair the health SCH28080 (a prototype of P-CAB), and the residues of those affected. Acid suppression in combination coordinating them, in a luminal-facing conduit that with antibiotics is a widely recognized treatment to extends to the cation-binding site (Figs. 2(b) and 2(c)). eradicate Helicobactor pylori, a strong risk factor for The binding sites of these P-CABs were previously gastric cancer. Proton pump inhibitors (PPIs) and a thought to overlap owing to similar inhibitory actions. recently developed class of acid suppressants called Our structures show that they do indeed partially K+-competitive acid blockers (P-CABs) are commonly overlap but are also distinct. The binding mode used for the treatment of acid-related diseases. of P-CABs determined in the crystal structure is Gastric H+,K+-ATPase therefore continues to be a consistent with mutagenesis studies, providing prominent target for the treatment of excess stomach the molecular basis for P-CAB binding to H+,K+- acidification. -
A Model of Mitochonrial Calcium Induced Calcium
A MODEL OF MITOCHONRIAL CALCIUM INDUCED CALCIUM RELEASE DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Balbir Thomas, The Ohio State University 2007 Dissertation Committee: Approved by David Terman, Adviser Douglas R. Pfeiffer Adviser Edward Overman Biophysics Graduate Program Christopher P. Fall ABSTRACT Cytoplasmic calcium plays a dual role in cellular physiology. On one hand it acts as a second messenger in intra-cellular signalling, and on the other hand it is also the trigger for calcium dependent apopotosis. A mechanistic explanation of this dual role of cytoplasmic calcium was proposed by Ichas and Mazat. Their hypothesis involved the permeability transition pore was based on the observation that the permeability transition pore can exist in multiple conductance states. Specifically there exist a persistent high conductance state and a transitory low conductance state. Ichas et.al. also observed that the low conductance state is opened by a rise in mitochondrial matrix pH, in contrast to what was already know about the high conductance state, which opens in response to prolonged elevation of mitochondrial calcium. In this dissertation we build a detailed, physiological model of the mitochondrial switch between calcium signalling and cell death based on a simple three state model of the permeability transition pore. This model agrees with the substance of the Ichas and Mazat hypothesis and provides a substrate for further modeling to study the spatial and temporal dynamics of mitochondrial involvement in intracellular calcium signalling, and the interaction of mitochondria and endoplasmic reticulum during this process. -
Molecular Cloning and Sequence of Cdna Encoding the Plasma
Proc. Nad. Acad. Sci. USA Vol. 86, 1234-1238, February 1989 Botany Molecular cloning and sequence of cDNA encoding the plasma membrane proton pump (H+-ATPase) of Arabidopsis thaliana (cation pumps/nucleotide sequence/amino add homology/oligonucleotide screening/transmembrane segments) JEFFREY F. HARPER, TERRY K. SUROWY*, AND MICHAEL R. SUSSMAN Department of Horticulture, University of Wisconsin, 1575 Linden Drive, Madison, WI 53706 Communicated by Luis Sequeira, November 14, 1988 ABSTRACT In plants, the transport of solutes across the synthesized an oligonucleotide probe to screen an oat cDNA plasma membrane is driven by a proton pump (H -ATPase) library and then used a purified oat clone to isolate a that produces an electric potential and pH gradient. We have full-length A. thaliana cDNA clone. Here we provide evi- isolated and sequenced a full-length cDNA clone that encodes dence for the presence of at least two genes encoding plasma this enzyme inArabidopsis thaiana. The protein predicted from membrane proton pumps in A. thaliana and report the its nucleotide sequence encodes 959 amino acids and has a predicted amino acid sequence from one. molecular mass of 104,207 Da. The plant protein shows structural features common to a family of cation-translocating MATERIALS AND METHODS ATPases found in the plasma membrane of prokaryotic and eukaryotic cells, with the greatest overall identity in amino acid Plants. A. thaliana L. cv. Columbia and Avena sativa L. sequence (36%) to the H+-ATPase observed in the plasma cv. Gary (oat) were plant materials used in this study. Unless membrane of fungi. The structure predicted from a hydropa- otherwise noted, standard molecular techniques were per- thy plot contains at least eight transmembrane segments, with formed according to Maniatis et al. -
NICU Gene List Generator.Xlsx
Neonatal Crisis Sequencing Panel Gene List Genes: A2ML1 - B3GLCT A2ML1 ADAMTS9 ALG1 ARHGEF15 AAAS ADAMTSL2 ALG11 ARHGEF9 AARS1 ADAR ALG12 ARID1A AARS2 ADARB1 ALG13 ARID1B ABAT ADCY6 ALG14 ARID2 ABCA12 ADD3 ALG2 ARL13B ABCA3 ADGRG1 ALG3 ARL6 ABCA4 ADGRV1 ALG6 ARMC9 ABCB11 ADK ALG8 ARPC1B ABCB4 ADNP ALG9 ARSA ABCC6 ADPRS ALK ARSL ABCC8 ADSL ALMS1 ARX ABCC9 AEBP1 ALOX12B ASAH1 ABCD1 AFF3 ALOXE3 ASCC1 ABCD3 AFF4 ALPK3 ASH1L ABCD4 AFG3L2 ALPL ASL ABHD5 AGA ALS2 ASNS ACAD8 AGK ALX3 ASPA ACAD9 AGL ALX4 ASPM ACADM AGPS AMELX ASS1 ACADS AGRN AMER1 ASXL1 ACADSB AGT AMH ASXL3 ACADVL AGTPBP1 AMHR2 ATAD1 ACAN AGTR1 AMN ATL1 ACAT1 AGXT AMPD2 ATM ACE AHCY AMT ATP1A1 ACO2 AHDC1 ANK1 ATP1A2 ACOX1 AHI1 ANK2 ATP1A3 ACP5 AIFM1 ANKH ATP2A1 ACSF3 AIMP1 ANKLE2 ATP5F1A ACTA1 AIMP2 ANKRD11 ATP5F1D ACTA2 AIRE ANKRD26 ATP5F1E ACTB AKAP9 ANTXR2 ATP6V0A2 ACTC1 AKR1D1 AP1S2 ATP6V1B1 ACTG1 AKT2 AP2S1 ATP7A ACTG2 AKT3 AP3B1 ATP8A2 ACTL6B ALAS2 AP3B2 ATP8B1 ACTN1 ALB AP4B1 ATPAF2 ACTN2 ALDH18A1 AP4M1 ATR ACTN4 ALDH1A3 AP4S1 ATRX ACVR1 ALDH3A2 APC AUH ACVRL1 ALDH4A1 APTX AVPR2 ACY1 ALDH5A1 AR B3GALNT2 ADA ALDH6A1 ARFGEF2 B3GALT6 ADAMTS13 ALDH7A1 ARG1 B3GAT3 ADAMTS2 ALDOB ARHGAP31 B3GLCT Updated: 03/15/2021; v.3.6 1 Neonatal Crisis Sequencing Panel Gene List Genes: B4GALT1 - COL11A2 B4GALT1 C1QBP CD3G CHKB B4GALT7 C3 CD40LG CHMP1A B4GAT1 CA2 CD59 CHRNA1 B9D1 CA5A CD70 CHRNB1 B9D2 CACNA1A CD96 CHRND BAAT CACNA1C CDAN1 CHRNE BBIP1 CACNA1D CDC42 CHRNG BBS1 CACNA1E CDH1 CHST14 BBS10 CACNA1F CDH2 CHST3 BBS12 CACNA1G CDK10 CHUK BBS2 CACNA2D2 CDK13 CILK1 BBS4 CACNB2 CDK5RAP2 -
The SERCA Residue Glu340 Mediates Interdomain Communication That Guides Ca2+ Transport
The SERCA residue Glu340 mediates interdomain communication that guides Ca2+ transport Maxwell M. G. Geurtsa,1, Johannes D. Clausenb,c,1, Bertrand Arnoub,d,1, Cédric Montignyd, Guillaume Lenoird, Robin A. Coreya, Christine Jaxeld, Jesper V. Møllerb, Poul Nissenc,e, Jens Peter Andersenb, Marc le Maired, and Maike Bublitza,2 aDepartment of Biochemistry, University of Oxford, OX1 3QU Oxford, United Kingdom; bDepartment of Biomedicine, Aarhus University, 8000 Aarhus C, Denmark; cDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark; dInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l’Energie Atomique et aux Energies Alternatives, CNRS, Université Paris-Saclay, 91198 Gif-sur-Yvette, France; and eDanish Research Institute of Translational Neuroscience-DANDRITE, Nordic European Molecular Biology Laboratory Partnership for Molecular Medicine, Aarhus University, 8000 Aarhus C, Denmark Edited by Ivet Bahar, University of Pittsburgh School of Medicine, Pittsburgh, PA, and approved October 21, 2020 (received for review July 15, 2020) The sarco(endo)plasmic reticulum Ca2+-ATPase (SERCA) is a P-type A number of SERCA1a crystal structures have shed light on ATPase that transports Ca2+ from the cytosol into the sarco(endo) the nature of the conformational changes associated with Ca2+ plasmic reticulum (SR/ER) lumen, driven by ATP. This primary transport (reviewed in refs. 3–5). There are two Ca2+-binding transport activity depends on tight coupling between movements sites within the TM domain of SERCA, denoted sites I and II of the transmembrane helices forming the two Ca2+-binding sites based on a proven sequential order of Ca2+ binding (6). The and the cytosolic headpiece mediating ATP hydrolysis. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
SERCA in Genesis of Arrhythmias: What We Already Know and What Is New?
Review 43 SERCA in genesis of arrhythmias: what we already know and what is new? Nilüfer Erkasap Department of Physiology, Medical Faculty, Eskiflehir Osmangazi University, Eskiflehir, Turkey ABSTRACT This review mainly focuses on the structure, function of the sarco(endo)plasmic reticulum calcium pump (SERCA) and its role in genesis of arrhythmias. SERCA is a membrane protein that belongs to the family of P-type ion translocating ATPases and pumps free cytosolic calcium into intracellular stores. Active transport of Ca2+ is achieved, according to the E1-E2 model, changing of SERCA structure by Ca2+. The affinity of Ca2+ -binding sites varies from high (E1) to low (E2). Three different SERCA genes were identified-SERCA1, SERCA2, and SERCA3. SERCA is mainly represented by the SERCA2a isoform in the heart. In heart muscle, during systole, depolarization triggers the release of Ca2+ from the sarcoplasmic reticulum (SR) and starts contraction. During diastole, muscle relaxation occurs as Ca2+ is again removed from cytosol, predominantly by accumulation into SR via the action of SERCA2a. The main regulator of SERCA2a is phospholamban and another regulator proteolipid of SERCA is sarcolipin. There are a lot of studies on the effect of decreased and/or increased SERCA activity in genesis of arrhythmia. Actually both decrease and increase of SERCA activity in the heart result in some pathological mechanisms such as heart failure and arrhythmia. (Anadolu Kardiyol Derg 2007: 7 Suppl 1; 43-6) Key words: sarco(endo)plasmic reticulum, SERCA, arrhythmia, calcium channels Introduction from cytosol, predominantly by accumulation into sarcoplasmic reticulum via the action of sarco(endo)plasmic reticulum Cardiac physiology is a major area of research in basic and Ca ATPase (SERCA). -
Transcriptomic Profiling of Ca Transport Systems During
cells Article Transcriptomic Profiling of Ca2+ Transport Systems during the Formation of the Cerebral Cortex in Mice Alexandre Bouron Genetics and Chemogenomics Lab, Université Grenoble Alpes, CNRS, CEA, INSERM, Bâtiment C3, 17 rue des Martyrs, 38054 Grenoble, France; [email protected] Received: 29 June 2020; Accepted: 24 July 2020; Published: 29 July 2020 Abstract: Cytosolic calcium (Ca2+) transients control key neural processes, including neurogenesis, migration, the polarization and growth of neurons, and the establishment and maintenance of synaptic connections. They are thus involved in the development and formation of the neural system. In this study, a publicly available whole transcriptome sequencing (RNA-Seq) dataset was used to examine the expression of genes coding for putative plasma membrane and organellar Ca2+-transporting proteins (channels, pumps, exchangers, and transporters) during the formation of the cerebral cortex in mice. Four ages were considered: embryonic days 11 (E11), 13 (E13), and 17 (E17), and post-natal day 1 (PN1). This transcriptomic profiling was also combined with live-cell Ca2+ imaging recordings to assess the presence of functional Ca2+ transport systems in E13 neurons. The most important Ca2+ routes of the cortical wall at the onset of corticogenesis (E11–E13) were TACAN, GluK5, nAChR β2, Cav3.1, Orai3, transient receptor potential cation channel subfamily M member 7 (TRPM7) non-mitochondrial Na+/Ca2+ exchanger 2 (NCX2), and the connexins CX43/CX45/CX37. Hence, transient receptor potential cation channel mucolipin subfamily member 1 (TRPML1), transmembrane protein 165 (TMEM165), and Ca2+ “leak” channels are prominent intracellular Ca2+ pathways. The Ca2+ pumps sarco/endoplasmic reticulum Ca2+ ATPase 2 (SERCA2) and plasma membrane Ca2+ ATPase 1 (PMCA1) control the resting basal Ca2+ levels. -
Endoplasmic Reticulum Potassium–Hydrogen Exchanger and Small
Research Article 625 Endoplasmic reticulum potassium–hydrogen exchanger and small conductance calcium-activated potassium channel activities are essential for ER calcium uptake in neurons and cardiomyocytes Malle Kuum1,2,3, Vladimir Veksler2,3, Joanna Liiv1, Renee Ventura-Clapier2,3 and Allen Kaasik1,* 1Department of Pharmacology, Centre of Excellence for Translational Medicine, University of Tartu, Ravila 19, Tartu EE-51014, Estonia 2INSERM, U-769, 5, rue Jean-Baptiste Clement, Chaˆtenay-Malabry F-92296, France 3Universite´ Paris-Sud, 5, rue Jean-Baptiste Clement, Chaˆtenay-Malabry F-92296, France *Author for correspondence ([email protected]) Accepted 12 September 2011 Journal of Cell Science 125, 625–633 ß 2012. Published by The Company of Biologists Ltd doi: 10.1242/jcs.090126 Summary Calcium pumping into the endoplasmic reticulum (ER) lumen is thought to be coupled to a countertransport of protons through sarcoplasmic/endoplasmic reticulum calcium ATPase (SERCA) and the members of the ClC family of chloride channels. However, pH in the ER lumen remains neutral, which suggests a mechanism responsible for proton re-entry. We studied whether cation–proton exchangers could act as routes for such a re-entry. ER Ca2+ uptake was measured in permeabilized immortalized hypothalamic neurons, primary rat cortical neurons and mouse cardiac fibers. Replacement of K+ in the uptake solution with Na+ or tetraethylammonium led to a strong inhibition of Ca2+ uptake in neurons and cardiomyocytes. Furthermore, inhibitors of the potassium–proton exchanger (quinine or propranolol) but not of the sodium–proton exchanger reduced ER Ca2+ uptake by 56–82%. Externally added nigericin, a potassium– + proton exchanger, attenuated the inhibitory effect of propranolol. -
Allosteric Regulation of SERCA by Phosphorylation- Mediated Conformational Shift of Phospholamban
Allosteric regulation of SERCA by phosphorylation- mediated conformational shift of phospholamban Martin Gustavssona, Raffaello Verardia, Daniel G. Mullena, Kaustubh R. Moteb, Nathaniel J. Traasetha,1, T. Gopinatha, and Gianluigi Vegliaa,b,2 aDepartment of Biochemistry, Molecular Biology, and Biophysics and bDepartment of Chemistry, University of Minnesota, Minneapolis, MN 55455 Edited by Chikashi Toyoshima, University of Tokyo, Tokyo, Japan, and approved September 13, 2013 (received for review May 26, 2013) The membrane protein complex between the sarcoplasmic re- cytoplasmic domain binds SERCA’s N domain in an α-helical + ticulum Ca2 -ATPase (SERCA) and phospholamban (PLN) controls conformation, suggesting that the inhibitory effect may be eli- + Ca2 transport in cardiomyocytes, thereby modulating cardiac con- cited via an induced fit mechanism. tractility. β-Adrenergic-stimulated phosphorylation of PLN at Ser- Interestingly, PLN’s cytoplasmic domain in the recent X-ray 16 enhances SERCA activity via an unknown mechanism. Using structure of the complex is completely unresolved (8), leaving solid-state nuclear magnetic resonance spectroscopy, we mapped many questions regarding its regulatory function unanswered. the physical interactions between SERCA and both unphosphory- Moreover, there have been few structural data on the complex lated and phosphorylated PLN in membrane bilayers. We found between SERCA and phosphorylated PLN. On the basis of cross- that the allosteric regulation of SERCA depends on the conforma- linking and sparse -
ATP2A1 Gene Atpase Sarcoplasmic/Endoplasmic Reticulum Ca2+ Transporting 1
ATP2A1 gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 Normal Function The ATP2A1 gene provides instructions for making an enzyme called sarco(endo) plasmic reticulum calcium-ATPase 1 (SERCA1). This enzyme belongs to a family of ATPase enzymes that help control the level of positively charged calcium atoms ( calcium ions) inside cells. The SERCA1 enzyme is found in skeletal muscle cells. ( Skeletal muscles are the muscles used for movement.) Within muscle cells, the SERCA1 enzyme is located in the membrane of a structure called the sarcoplasmic reticulum. This structure plays a major role in muscle contraction and relaxation by storing and releasing calcium ions. When calcium ions are transported out of the sarcoplasmic reticulum, muscles contract; when calcium ions are transported into the sarcoplasmic reticulum, muscles relax. The SERCA1 enzyme transports calcium ions from the cell into the sarcoplasmic reticulum, triggering muscle relaxation. Health Conditions Related to Genetic Changes Brody myopathy At least 10 mutations in the ATP2A1 gene have been found to cause Brody myopathy, a muscle disorder characterized by muscle cramping after exercise. Most ATP2A1 gene mutations lead to a premature stop signal in the instructions for making the SERCA1 enzyme, resulting in a nonfunctional enzyme. Other mutations lead to the production of a SERCA1 enzyme with decreased function. As a result, calcium ions are slow to enter the sarcoplasmic reticulum and muscle relaxation is delayed. After exercise or other strenuous activity, during which the muscles rapidly contract and relax, people with Brody myopathy develop muscle cramps because their muscles cannot fully relax. Scientists believe that other proteins or other pathways may function in the absence of a fully functional SERCA1 enzyme to transport calcium ions into the sarcoplasmic reticulum and help with muscle relaxation.