C6.1 Underground Standing and Running Waterbody
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Cave Shrimps Troglocaris S. Str. (Dormitzer, 1853), Taxonomic Revision and Description of New Taxa After Phylogenetic and Morphometric Studies
Zootaxa 3421: 1–31 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2012 · Magnolia Press ISSN 1175-5334 (online edition) Cave shrimps Troglocaris s. str. (Dormitzer, 1853), taxonomic revision and description of new taxa after phylogenetic and morphometric studies JURE JUGOVIC1,2*, BRANKO JALŽIĆ3, SIMONA PREVORČNIK4 & BORIS SKET5 1,4,5 Univerza v Ljubljani, Biotehniška fakulteta, Oddelek za biologijo, Večna pot 111, 1000 Ljubljana, Slovenia. 2 Univerza na Primorskem, Znanstveno raziskovalno središče, Garibaldijeva 1, 6000 Koper, Slovenia & Univerza na Primorskem, Fakulteta za matematiko, naravoslovje in informacijske tehnologije, Glagoljaška 8, 6000 Koper 3 Hrvatski prirodoslovni muzej, Demetrova 1, 10000 Zagreb, Croatia. E-mail addresses: 1 [email protected]; [email protected]; 3 [email protected]; 4 [email protected]; 5 [email protected] * Corresponding author Abstract Within the Dinaric genus Troglocaris cave shrimps from the subgenus Troglocaris s. str. (Dormitzer, 1853) (Crustacea: Decapoda: Atyidae), have the widest distribution area. The recent molecular analyses have revealed significant, cryptic diversity in the subgenus. The aim of the subsequent detailed morphometric analyses was the provision of the appropriate diagnosable characters for the discovered lineages, i.e. taking care of their taxonomical visibility. We herein designate a neotype and provide a detailed description for the polytipic type species of the genus T. (T.) anophthalmus (Kollar, 1848), to enable its morphological distinction from the erroneously described T. (T.) planinensis Birštejn, 1948. Considering a combination of morphological, geographical and molecular data, we describe four new subspecies: T. (T.) a. ocellata ssp. -
Phylogeography of the Cave Shrimp Troglocaris Anophthalmus (Crustacea: Decapoda: Atyidae)
Molecular Ecology (2009) 18, 931–946 doi: 10.1111/j.1365-294X.2008.04061.x TheBlackwell Publishing Ltd limits of cryptic diversity in groundwater: phylogeography of the cave shrimp Troglocaris anophthalmus (Crustacea: Decapoda: Atyidae) VALERIJA ZAKŠEK,* BORIS SKET,* SANJA GOTTSTEIN,† DAMJAN FRANJEVIC† and PETER TRONTELJ* *Department of Biology, Biotechnical Faculty, University of Ljubljana, PO Box 2995, SI-1001 Ljubljana, Slovenia, †Department of Zoology, Faculty of Science, University of Zagreb, Roosveltov trg 6, 10000 Zagreb, Croatia Abstract Recent studies have revealed high local diversity and endemism in groundwaters, and showed that species with large ranges are extremely rare. One of such species is the cave shrimp Troglocaris anophthalmus from the Dinaric Karst on the western Balkan Peninsula, apparently uniform across a range of more than 500 kilometres. As such it contradicts the paradigm that subterranean organisms form localized, long-term stable populations that cannot disperse over long distances. We tested it for possible cryptic diversity and/or un- expected evolutionary processes, analysing mitochondrial (COI, 16S rRNA) and nuclear (ITS2) genes of 232 specimens from the entire range. The results of an array of phylogeo- graphical procedures congruently suggested that the picture of a widespread, continuously distributed and homogenous T. anophthalmus was wrong. The taxon is composed of four or possibly five monophyletic, geographically defined phylogroups that meet several species delimitation criteria, two of them showing evidence of biological reproductive isolation in sympatry. COI genetic distances between phylogroups turned out to be a poor predictor, as they were much lower than the sometimes suggested crustacean threshold value of 0.16 substitutions per site. -
Reproductive Biology and Phylogeny of Urodela
CHAPTER 13 Life Histories Richard C. Bruce 13.1 INTRODUCTION The life history of an animal is the sequence of morphogenetic stages from fertilization of the egg to senescence and death, which incorporates the probabilistic distributions of demographic parameters of an individual’s population as components of the life-history phenotype. At the population (or species) level, and in the context of ectothermic vertebrates, Dunham et al. (1989) have defined a life history in terms of a heritable set of rules that govern three categories of allocations: (1) allocation of time among such activities as feeding, mating, defense, and migration; (2) allocation of assimilated resources among growth, storage, maintenance, and reproduction; and (3) the mode of “packaging” of the reproductive allocation. An application of such an allocation-based definition in the study of salamander life histories was provided by Bernardo (1994). Implicit in the definition is the condition that life-history traits have a heritable basis; average plasticity in any trait reflects the average reaction norm, or the range in phenotypes expressed by a given genotype, averaged for all genotypes, over the range of environments experienced by all members of the population (Via 1993). Salamanders show greater diversity in life histories than any other vertebrate taxon of equivalent rank, which is all the more remarkable given the relatively small number (about 500) of known extant species. Beginning, somewhat arbitrarily, with the landmark studies of the plethodontids Desmognathus fuscus and Eurycea bislineata by Inez W. Wilder (1913, 1924) [who earlier published papers on salamanders under the name I. L. Whipple], this diversity has generated considerable interest by ecologists and herpetologists during the past 90 years. -
View Preprint
A peer-reviewed version of this preprint was published in PeerJ on 23 July 2018. View the peer-reviewed version (peerj.com/articles/5268), which is the preferred citable publication unless you specifically need to cite this preprint. Guy-Haim T, Simon-Blecher N, Frumkin A, Naaman I, Achituv Y. 2018. Multiple transgressions and slow evolution shape the phylogeographic pattern of the blind cave-dwelling shrimp Typhlocaris. PeerJ 6:e5268 https://doi.org/10.7717/peerj.5268 Multiple transgressions and slow evolution shape the phylogeographic pattern of the blind cave-dwelling shrimp Typhlocaris Tamar Guy-Haim Corresp., 1, 2 , Noa Simon-Blecher 3 , Amos Frumkin 4 , Israel Naaman 4 , Yair Achituv 3 1 Marine Ecology, GEOMAR, Helmholtz Centre for Ocean Research, Kiel, Germany 2 Marine Biology, Israel Oceanographic and Limnological Research, Haifa, Israel 3 The Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gan, Israel 4 Institute of Earth Science, Hebrew University of Jerusalem, Jerusalem, Israel Corresponding Author: Tamar Guy-Haim Email address: [email protected] Background. Aquatic subterranean species often exhibit disjunct distributions, with high level of endemism and small range, shaped by vicariance, limited dispersal, and evolutionary rates. We studied the disjunct biogeographic patterns of an endangered blind cave shrimp, Typhlocaris, and identified the geological and evolutionary processes that have shaped its divergence pattern. Methods. We collected Typlocaris specimens of three species (T. galilea, T. ayyaloni, and T. salentina), originating from subterranean groundwater caves by the Mediterranean Sea, and used three mitochondrial genes (12S, 16S, COI) and four nuclear genes (18S, 28S, ITS, H3) to infer their phylogenetic relationships. -
Strasbourg, 22 May 2002
Strasbourg, 21 October 2015 T-PVS/Inf (2015) 18 [Inf18e_2015.docx] CONVENTION ON THE CONSERVATION OF EUROPEAN WILDLIFE AND NATURAL HABITATS Standing Committee 35th meeting Strasbourg, 1-4 December 2015 GROUP OF EXPERTS ON THE CONSERVATION OF AMPHIBIANS AND REPTILES 1-2 July 2015 Bern, Switzerland - NATIONAL REPORTS - Compilation prepared by the Directorate of Democratic Governance / The reports are being circulated in the form and the languages in which they were received by the Secretariat. This document will not be distributed at the meeting. Please bring this copy. Ce document ne sera plus distribué en réunion. Prière de vous munir de cet exemplaire. T-PVS/Inf (2015) 18 - 2 – CONTENTS / SOMMAIRE __________ 1. Armenia / Arménie 2. Austria / Autriche 3. Belgium / Belgique 4. Croatia / Croatie 5. Estonia / Estonie 6. France / France 7. Italy /Italie 8. Latvia / Lettonie 9. Liechtenstein / Liechtenstein 10. Malta / Malte 11. Monaco / Monaco 12. The Netherlands / Pays-Bas 13. Poland / Pologne 14. Slovak Republic /République slovaque 15. “the former Yugoslav Republic of Macedonia” / L’« ex-République yougoslave de Macédoine » 16. Ukraine - 3 - T-PVS/Inf (2015) 18 ARMENIA / ARMENIE NATIONAL REPORT OF REPUBLIC OF ARMENIA ON NATIONAL ACTIVITIES AND INITIATIVES ON THE CONSERVATION OF AMPHIBIANS AND REPTILES GENERAL INFORMATION ON THE COUNTRY AND ITS BIOLOGICAL DIVERSITY Armenia is a small landlocked mountainous country located in the Southern Caucasus. Forty four percent of the territory of Armenia is a high mountainous area not suitable for inhabitation. The degree of land use is strongly unproportional. The zones under intensive development make 18.2% of the territory of Armenia with concentration of 87.7% of total population. -
Estimating Population Size of the Cave Shrimp Troglocaris Anophthalmus (Crustacea, Decapoda, Caridea) Using Mark–Release–Recapture Data
Animal Biodiversity and Conservation 38.1 (2015) 77 Estimating population size of the cave shrimp Troglocaris anophthalmus (Crustacea, Decapoda, Caridea) using mark–release–recapture data J. Jugovic, E. Praprotnik, E. V. Buzan & M. Lužnik Jugovic, J., Praprotnik, E., Buzan, E. V. & Lužnik, M., 2015. Estimating population size of the cave shrimp Troglocaris anophthalmus (Crustacea, Decapoda, Caridea) using mark–release–recapture data. Animal Biodiversity and Conservation, 38.1: 77–86, Doi: https://doi.org/10.32800/abc.2015.38.0077 Abstract Estimating population size of the cave shrimp Troglocaris anophthalmus (Crustacea, Decapoda, Caridea) using mark–release–recapture data.— Population size estimates are lacking for many small cave–dwelling aquatic in- vertebrates that are vulnerable to groundwater contamination from anthropogenic activities. Here we estimated the population size of freshwater shrimp Troglocaris anophthalmus sontica (Crustacea, Decapoda, Caridea) based on mark–release–recapture techniques. The subspecies was investigated in Vipavska jama (Vipava cave), Slovenia, with estimates of sex ratio and age distribution. A high abundance of shrimps was found even after considering the lower limit of the confidence intervals. However, we found no evidence of differences in shrimp abundances between summer and winter. The population was dominated by females. Ease of capture and abundant popula- tion numbers indicate that these cave shrimps may be useful as a bioindicator in cave ecosystems. Key words: Mark–release–recapture, Population size, Dinarides, Vipavska jama, Sex ratio Resumen Estimación del tamaño de la población del camarón cavernícola Troglocaris anophthalmus (Crustacea, Decapoda, Caridea) mediante la utilización de datos de marcaje, liberación y recaptura.— Se desconoce el tamaño de la población de numerosos invertebrados acuáticos cavernícolas que son vulnerables a la contaminación de las aguas subterráneas provocada por las actividades antropogénicas. -
Secondary Sympatric Occurrence of Sibling Species of Subterranean Shrimps in the Karst
lnt. J. Speleol. 19 (1990): 9-27 Secondary sympatric occurrence of sibling species of subterranean shrimps in the Karst M. Cobolli Sbordoni*, M. Mattoccia**, G. La Rosa*, E. De Matthaeis* and V. Sbordoni** SUMMARY Allozyme variation at 32 gene loci was studied in cave dwelling shrimps of the genus Troglocaris (fam. Atyidae). Populations were collected from several caves and wells belonging to different drainage systems in the Karst areas of NE Italy. Results suggest the existence of two sympatric, genetically distinct, biological species (provisionally indicated as species A and B in the T. anophthalmus complex) in the samples collected at the Duino Well, Sagrado and Comarie caves (Nei's 1):=0.209).Samples from Gradisca and Aurisina are represented by only one (A)or the other (B) of the two species, respectively. Two remaining eastern populations from the Rosandra Valley also proved to be monospecific. However, they possess fixed alternative alleles markedly different from both species A and B suggesting that these two populations may belong to a third sibling species, C (A vs C, 0=0.346; B vs C."15'=0.146).These data are discussed in relation to allopatric speciation of cave dwelling shrimp species, flooding periods of subterranean waters and the role of cave organisms as markers of this process. INTRODUCTION Speciation processes of cave dwelling populations and their divergence from epigean ancestors are thought to be promoted at a large extent, by geographic isolation (Barr, 1968; Sbordoni, 1982; Barr and Holsinger, 1985), although in some instances active dispersal accompanied by adaptive shift has been hypothesized as a possible speciation mechanism (Howarth, 1987; Rouch and Danielopol, 1987). -
Journal of Cave and Karst Studies
June 2020 Volume 82, Number 2 JOURNAL OF ISSN 1090-6924 A Publication of the National CAVE AND KARST Speleological Society STUDIES DEDICATED TO THE ADVANCEMENT OF SCIENCE, EDUCATION, EXPLORATION, AND CONSERVATION Published By BOARD OF EDITORS The National Speleological Society Anthropology George Crothers http://caves.org/pub/journal University of Kentucky Lexington, KY Office [email protected] 6001 Pulaski Pike NW Huntsville, AL 35810 USA Conservation-Life Sciences Julian J. Lewis & Salisa L. Lewis Tel:256-852-1300 Lewis & Associates, LLC. [email protected] Borden, IN [email protected] Editor-in-Chief Earth Sciences Benjamin Schwartz Malcolm S. Field Texas State University National Center of Environmental San Marcos, TX Assessment (8623P) [email protected] Office of Research and Development U.S. Environmental Protection Agency Leslie A. North 1200 Pennsylvania Avenue NW Western Kentucky University Bowling Green, KY Washington, DC 20460-0001 [email protected] 703-347-8601 Voice 703-347-8692 Fax [email protected] Mario Parise University Aldo Moro Production Editor Bari, Italy [email protected] Scott A. Engel Knoxville, TN Carol Wicks 225-281-3914 Louisiana State University [email protected] Baton Rouge, LA [email protected] Exploration Paul Burger National Park Service Eagle River, Alaska [email protected] Microbiology Kathleen H. Lavoie State University of New York Plattsburgh, NY [email protected] Paleontology Greg McDonald National Park Service Fort Collins, CO The Journal of Cave and Karst Studies , ISSN 1090-6924, CPM [email protected] Number #40065056, is a multi-disciplinary, refereed journal pub- lished four times a year by the National Speleological Society. -
Variability of a Subterranean Prey-Predator Community in Space and Time
diversity Article Variability of A Subterranean Prey-Predator Community in Space and Time Sebastiano Salvidio 1,2,* , Andrea Costa 1, Fabrizio Oneto 1,2 and Mauro Valerio Pastorino 2 1 Dipartimento Scienze della Terra dell’Ambiente e della Vita—DISTAV, Università degli Studi di Genova, 16132 Genova, Italy; [email protected] (A.C.); [email protected] (F.O.) 2 Gruppo Speleologico “A. Issel”, Villa Comunale ex Borsino c.p. 21, 16012 BUSALLA (GE), Italy; [email protected] * Correspondence: [email protected]; Tel.: +39-010-3358027 Received: 18 December 2019; Accepted: 27 December 2019; Published: 31 December 2019 Abstract: Subterranean habitats are characterized by buffered climatic conditions in comparison to contiguous surface environments and, in general, subterranean biological communities are considered to be relatively constant. However, although several studies have described the seasonal variation of subterranean communities, few analyzed their variability over successive years. The present research was conducted inside an artificial cave during seven successive summers, from 2013 to 2019. The parietal faunal community was sampled at regular intervals from outside to 21 m deep inside the cave. The community top predator is the cave salamander Speleomantes strinatii, while invertebrates, mainly adult flies, make up the rest of the faunal assemblage. Our findings indicate that the taxonomic composition and the spatial distribution of this community remained relatively constant over the seven-year study period, supporting previous findings. However, different environmental factors were shaping the distribution of predators and prey along the cave. Invertebrates were mainly affected by the illuminance, while salamanders were influenced by both illuminance and distance from the cave’s entrance. -
Volume 2, Chapter 14-8: Salamander Mossy Habitats
Glime, J. M. and Boelema, W. J. 2017. Salamander Mossy Habitats. Chapt. 14-8. In: Glime, J. M. Bryophyte Ecology. Volume 2. 14-8-1 Bryological Interaction.Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 19 July 2020 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology2/>. CHAPTER 14-8 SALAMANDER MOSSY HABITATS Janice M. Glime and William J. Boelema TABLE OF CONTENTS Tropical Mossy Habitats – Plethodontidae........................................................................................................ 14-8-3 Terrestrial and Arboreal Adaptations ......................................................................................................... 14-8-3 Bolitoglossa (Tropical Climbing Salamanders) ......................................................................................... 14-8-4 Bolitoglossa diaphora ................................................................................................................................ 14-8-5 Bolitoglossa diminuta (Quebrada Valverde Salamander) .......................................................................... 14-8-5 Bolitoglossa hartwegi (Hartweg's Mushroomtongue Salamander) ............................................................ 14-8-5 Bolitoglossa helmrichi ............................................................................................................................... 14-8-5 Bolitoglossa jugivagans ............................................................................................................................ -
Evolutionary History of Relict Congeria (Bivalvia: Dreissenidae): Unearthing the Subterranean Biodiversity of the Dinaric Karst Bilandžija Et Al
Evolutionary history of relict Congeria (Bivalvia: Dreissenidae): unearthing the subterranean biodiversity of the Dinaric Karst Bilandžija et al. Bilandžija et al. Frontiers in Zoology 2013, 10:5 http://www.frontiersinzoology.com/content/10/1/5 Bilandžija et al. Frontiers in Zoology 2013, 10:5 http://www.frontiersinzoology.com/content/10/1/5 RESEARCH Open Access Evolutionary history of relict Congeria (Bivalvia: Dreissenidae): unearthing the subterranean biodiversity of the Dinaric Karst Helena Bilandžija1,2, Brian Morton3, Martina Podnar4 and Helena Ćetković1* Abstract Background: Patterns of biodiversity in the subterranean realm are typically different from those encountered on the Earth’s surface. The Dinaric karst of Croatia, Slovenia and Bosnia and Herzegovina is a global hotspot of subterranean biodiversity. How this was achieved and why this is so remain largely unresolved despite a long tradition of research. To obtain insights into the colonisation of the Dinaric Karst and the effects of the subterranean realm on its inhabitants, we studied the tertiary relict Congeria, a unique cave-dwelling bivalve (Dreissenidae), using a combination of biogeographical, molecular, morphological, and paleontological information. Results: Phylogenetic and molecular clock analyses using both nuclear and mitochondrial markers have shown that the surviving Congeria lineage has actually split into three distinct species, i.e., C. kusceri, C. jalzici sp. nov. and C. mulaomerovici sp. nov., by vicariant processes in the late Miocene and Pliocene. Despite millions of years of independent evolution, analyses have demonstrated a great deal of shell similarity between modern Congeria species, although slight differences in hinge plate structure have enabled the description of the two new species. -
Structure, Function and Development of the Digestive System in Malacostracan Crustaceans and Adaptation to Different Lifestyles
Cell and Tissue Research (2019) 377:415–443 https://doi.org/10.1007/s00441-019-03056-0 REVIEW Structure, function and development of the digestive system in malacostracan crustaceans and adaptation to different lifestyles Jasna Štrus1 & Nada Žnidaršič1 & Polona Mrak1 & Urban Bogataj1 & Günter Vogt2 Received: 15 January 2019 /Accepted: 9 June 2019 /Published online: 4 July 2019 # Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract The digestive system of the malacostracan crustaceans, namely the decapods, isopods, amphipods and mysids, is among the most complex organ systems of the animal kingdom serving multiple functions such as food processing, absorption and storage of nutrients, synthesis of digestive enzymes and blood proteins, detoxification of xenobiotics and osmoregulation. It is rather well investigated compared to other invertebrates because the Malacostraca include many ecological keystone species and food items for humans. The Decapoda and Peracarida share food processing with chewing and filtering structures of the stomach but differ with respect to morphology and ultrastructure of the digestive glands. In the Peracarida, the digestive glands are composed of few, relatively large lateral caeca, whereas in the Decapoda, hundreds to thousands of blindly ending tubules form a voluminous hepatopancreas. Morphogenesis and onset of functionality of the digestive system strongly depend on the mode of development. The digestive system is early developed in species with feeding planktonic larvae and appears late in species with direct lecithotrophic development. Some structures of the digestive system like the stomach ossicles are rather constant in higher taxa and are of taxonomic value, whereas others like the chewing structures are to some degree adapted to the feeding strategy.