Identiˆcation of Analogous Geotrichum Candidum Strains Isolated from Surface Mould Ripened Soft Cheese and Raw Milk
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A Newsletter for Persons Interested in Yeast
ISSN 0513-5222 A Newsletter for Persons Interested in Yeast Official Publication of the International Commission on Yeasts of the International Union of Microbiological Societies (IUMS) JUNE 2010 Volume LIX, Number I Marc-André Lachance, Editor University of Western Ontario, London, Ontario, Canada N6A 5B7 <[email protected]> http://publish.uwo.ca/~lachance/YeastNewsletter.html Associate Editors Peter Biely Patrizia Romano Kyria Boundy-Mills Institute of Chemistry Dipartimento di Biologia, Difesa Herman J. Phaff Culture Slovak Academy of e Biotecnologie Agro-Forestali Collection Sciences Università della Basilicata, Department of Food Science and Dúbravská cesta 9, 842 3 Via Nazario Sauro, 85, 85100 Potenza, Technology 8 Bratislava, Slovakia Italy University of California Davis Davis California 95616-5224 F Hagen, Utrecht, The Netherlands . 19 HV Amorim, Pracicaba, Sao Paulo, Brazil . 29 JA Barnett, Norwich, United Kingdom . 20 D Begerow and A Yurkov, Bochum, Germany 29 CA Rosa, Belo Horizonte, D Kregiel, Lodz, Poland ................. 30 Minas Gerais, Brazil .............. 20 M Kopecká, Brno, Czech Republic . 32 WI Golubev, Puschino, Russia . 21 D Libkind, Bariloche, Argentina . 33 GI Naumov and E.S. Naumova, G. Miloshev, Sofia, Bulgaria . 33 Moscow, Russia .................. 22 JP Tamang, Tadong, India . 35 A Bakalinsky, Corvalis, Oregon, USA . 23 MA Lachance, London, Ontario, Canada . 35 H Lee, Guelph, Ontario, Canada . 24 Á Fonseca and JP Sampaio, WM Ingledew, Parksville, Capa Rica, Portugal ............... 36 British Columbia, Canada . 25 Recent Meeting ........................ 38 M Sipiczki, Debrecen, Hungary . 26 Forthcoming Meeting .................... 42 A Speers, Halifax, Nova Scotia, Canada . 27 Publications of interest ................... 43 SO Suh, Manassas, Virgina, USA . 27 Fifty Years Ago ........................ 47 P Venkov, Cherni vrah, Bulgaria . -
Présentée Par : Melle BELHOUCINE Latifa Les Champignons Associés Au Platypus Cylindrus Fab. (Coleoptera, Curculionidae, Platy
République Algérienne Démocratique Et Populaire Ministère de l’Enseignement Supérieure et de La Recherche Scientifique Université Abou Bakr Belkaid Tlemcen Faculté des Sciences de la Nature et de la Vie et Sciences de la Terre et de l’Univers Département Des Sciences d’Agronomie et des Forêts Présentée par : Melle BELHOUCINE Latifa En vue de l’obtention du diplôme de Doctorat en Sciences Forestières Les champignons associés au Platypus cylindrus Fab. (Coleoptera, Curculionidae, Platypodinae) dans un jeune peuplement de chêne-liège de la forêt de M’Sila (Oran, nord-ouest d’Algérie) : Etude particulière de la biologie et l’épidémiologie de l’insecte Devant le jury composé de: Président : Pr. Letreuch- Belarouci N. Université de Tlemcen Directeur de thèse : Pr. Bouhraoua T.R. Université de Tlemcen Co- Directeur de thèse : Pr. Pujade i-Villar J. Université de Barcelone - Espagne Examinateur : Pr. Chakali G. Université INA Alger Examinateur : Pr. Bellahcene M. Université de Mostaganem Examinateur : Pr. Abdelwahid D. Université de Tlemcen Année 2012-2013 Que ce travail soit un témoignage de ma grande affection pour : - Mon très cher père ; - Ma défunte mère ; - Mes sœurs ; - Mes frères ; - Mes nièces et neveux ; - Mes belles sœurs et beaux frères ; - Mes amis. “It’s the journey that’s important, not the getting there” (John McLeod). L'écriture de cette thèse a été un voyage fascinant plein d'expériences inoubliables. La rédaction d'une thèse est un long voyage, et évidemment pas possible sans le soutien de nombreuses personnes. J'ai été vraiment privilégiée pour commencer mon voyage dans le monde de la science avec de nombreuses personnes inspirantes. -
Identification and Phylogeny of Ascomycetous Yeasts from Analysis
Antonie van Leeuwenhoek 73: 331–371, 1998. 331 © 1998 Kluwer Academic Publishers. Printed in the Netherlands. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences Cletus P. Kurtzman∗ & Christie J. Robnett Microbial Properties Research, National Center for Agricultural Utilization Research, Agricultural Research Ser- vice, U.S. Department of Agriculture, Peoria, Illinois 61604, USA (∗ author for correspondence) E-mail: [email protected] Received 19 June 1998; accepted 19 June 1998 Key words: Ascomycetous yeasts, phylogeny, ribosomal DNA, systematics Abstract Approximately 500 species of ascomycetous yeasts, including members of Candida and other anamorphic genera, were analyzed for extent of divergence in the variable D1/D2 domain of large subunit (26S) ribosomal DNA. Divergence in this domain is generally sufficient to resolve individual species, resulting in the prediction that 55 currently recognized taxa are synonyms of earlier described species. Phylogenetic relationships among the ascomycetous yeasts were analyzed from D1/D2 sequence divergence. For comparison, the phylogeny of selected members of the Saccharomyces clade was determined from 18S rDNA sequences. Species relationships were highly concordant between the D1/D2 and 18S trees when branches were statistically well supported. Introduction lesser ranges of nDNA relatedness than those found among heterothallic species. Disadvantages of nDNA reassociation studies in- Procedures commonly used for yeast identification clude the need for pairwise comparisons of all isolates rely on the appearance of cellular morphology and dis- under study and that resolution is limited to the ge- tinctive reactions on a standardized set of fermentation netic distance of sister species, i.e., closely related and assimilation tests. -
Title Melon Aroma-Producing Yeast Isolated from Coastal
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Kyoto University Research Information Repository Melon aroma-producing yeast isolated from coastal marine Title sediment in Maizuru Bay, Japan Sutani, Akitoshi; Ueno, Masahiro; Nakagawa, Satoshi; Author(s) Sawayama, Shigeki Citation Fisheries Science (2015), 81(5): 929-936 Issue Date 2015-09 URL http://hdl.handle.net/2433/202563 The final publication is available at Springer via http://dx.doi.org/10.1007/s12562-015-0912-5.; The full-text file will be made open to the public on 28 July 2016 in Right accordance with publisher's 'Terms and Conditions for Self- Archiving'.; This is not the published version. Please cite only the published version. この論文は出版社版でありません。 引用の際には出版社版をご確認ご利用ください。 Type Journal Article Textversion author Kyoto University 1 FISHERIES SCIENCE ORIGINAL ARTICLE 2 Topic: Environment 3 Running head: Marine fungus isolation 4 5 Melon aroma-producing yeast isolated from coastal marine sediment in Maizuru Bay, 6 Japan 7 8 Akitoshi Sutani1 · Masahiro Ueno2 · Satoshi Nakagawa1· Shigeki Sawayama1 9 10 11 12 __________________________________________________ 13 (Mail) Shigeki Sawayama 14 [email protected] 15 16 1 Laboratory of Marine Environmental Microbiology, Division of Applied Biosciences, 17 Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan 18 2 Maizuru Fisheries Research Station, Field Science Education and Research Center, Kyoto 19 University, Kyoto 625-0086, Japan 1 20 Abstract Researches on marine fungi and fungi isolated from marine environments are not 21 active compared with those on terrestrial fungi. The aim of this study was isolation of novel 22 and industrially applicable fungi derived from marine environments. -
Docteur En Sciences Guillaume Morel La Levure Geotrichum
UNIVERSITE PARIS-SUD XI Ecole doctorale : Gènes, Génomes, Cellules THESE Présentée pour obtenir le grade de Docteur en Sciences De l’Université Paris-Sud XI Orsay Spécialité : Biologie Par Guillaume Morel La levure Geotrichum candidum : taxonomie, biodiversité et génome Soutenue le 20 décembre 2012 Devant le jury composé de : Pr. Cécile FAIRHEAD, UMR8621, IGM Université Paris Sud XI Présidente du jury Dr. Sylvie DEQUIN, UMR1083-SPO, INRA Rapporteur Pr. Jean Luc SOUCIET, UMR7156 Université Louis Pasteur Strasbourg Rapporteur Pr. Claude GAILLARDIN, UMR1319 Institut MICALIS, INRA Examinateur Dr. Joëlle REITZ-AUSSEUR, Laboratoire SOREDAB Examinateur Dr. Serge CASAREGOLA, UMR1319 Institut MICALIS, INRA, Directeur de thèse AgroParisTech INRA UMR1319 MICALIS – CIRM Levures Avenue Lucien Brétignières - 78850 Thiverval Grignon REMERCIEMENTS Je souhaite tout d’abord remercier le Dr Sylvie Dequin, le Pr Cécile Fairhead, le Pr Jean- Luc Souciet et le Pr Claude Gaillardin pour m’avoir fait l’honneur de participer à mon jury de thèse et d’avoir accepté d’évaluer mon travail. Je tiens à remercier tout particulièrement Sylvie Dequin et Jean Luc Souciet d’avoir accepté d’être mes rapporteurs Je voudrais ensuite remercier les Dr Stéphane Aymerich et Dr Jean-Marie Beckerich pour m’avoir accueilli dans leur unité au sein de laquelle j’ai découvert un environnement de travail de qualité. Je tiens à remercier mon directeur de thèse, le Dr Serge Casaregola, pour m’avoir confié ce travail de recherche, ainsi que pour sa disponibilité, son aide et ses précieux conseils au cours de ces années. Merci pour avoir été tout simplement humain dans les moments les plus difficiles. -
C. P. Kurtzman's Evolving Concepts of Species, Genus and Higher Categories
FEMS Yeast Research, 18, 2018, foy103 doi: 10.1093/femsyr/foy103 Advance Access Publication Date: 20 September 2018 Minireview MINIREVIEW C. P. Kurtzman’s evolving concepts of species, genus Downloaded from https://academic.oup.com/femsyr/article/18/8/foy103/5104380 by guest on 29 September 2021 and higher categories Marc-Andre´ Lachance Department of Biology, University of Western Ontario, London, ON N6A 5B7, Canada Corresponding author: Tel. 1-519-661-3752; E-mail: [email protected] One sentence summary: Cletus P. Kurtzman revolutionised yeast systematics; this is an overview of the evolution of his thoughts on yeast species, genera and higher categories. Editor: Teun Boekhout ABSTRACT Cletus P. Kurtzman transformed the way yeast systematists practice their trade and how they perceive the yeast species. He redefined many genera of ascomycetous yeasts and provided a sound basis upon which to base higher taxonomic categories. Within his extraordinary corpus lies a trail of elements that can be used to reconstruct his evolving vision of the concepts that underlie the species and the genus, rarely set in a theoretical framework. While occasionally tipping his hat to the biological and phylogenetic species, Kurtzman espoused a concept founded primarily on genetic distance, even when claiming otherwise. In contrast, his notion of genus incorporated components of both genetic distance and phylogenetic structure, and possibly a size consideration. A phylogenetic approach predominated with higher taxa. Keywords: Cletus P. Kurtzman; yeast species; yeast genus; genetic distance; phylogenetics; Ascomycetes INTRODUCTION Kurtzman’s laboratory lived up to the highest standards and implemented forefront methodologies for imaging, ascospore ‘I have never done anything “useful”. -
The Isolation and Identification of Fungi from the Soil in Gardens of Cabbage Were Contaminated with Pesticide Residues in Subdistrict Modoinding
International Journal of Research in Engineering and Science (IJRES) ISSN (Online): 2320-9364, ISSN (Print): 2320-9356 www.ijres.org Volume 4 Issue 7 ǁ July. 2016 ǁ PP. 25-32 The Isolation and Identification of Fungi from the Soil in Gardens of Cabbage Were Contaminated with Pesticide Residues in Subdistrict Modoinding Stella D. Umboh1), Christina L. Salaki2), Max Tulung2), Lucia C. Mandey2), And Redsway T.D. Maramis2) 1) Doctoral Student at the University of Sam Ratulangi, Manado, North Sulawesi, Indonesia. Mobile Phone: + 62- 81340091042. E-mail: [email protected] 2) Faculty of Agriculture, University of Sam Ratulangi, Manado, North Sulawesi Abstract: Application of pesticides in the garden cabbage can cause negative effects harmful to the environment and living things. The objectives of this research were to get species of fungi from the soil in the gardens of cabbage contaminated with pesticide residues in Subdistrict Modoinding. Isolation of fungi using dilution plate method with serial dilutions of 10-2 to 10-5 on Potato Dextrose Agar (PDA). Of the five soil treatments in the gardens of cabbage obtained 76 isolates of the fungus. Isolates of soil fungi that were successfully identified macroscopically and microscopically. These fungal isolates included in 13 families and 22 species. Fungal species according to the following families: Endomycetaceae (Geotrichum candidum), Trichocomaceae (Penicillium citrinum, Aspergillus fumigatus, Aspergillus nidulans, Paecilomyces lilacinus, Aspergillus foot cell, Aspergillus sydowii, Aspergillus flavus, Aspergillus terreus and Aspergillus niger), Sordariaceae (Chrysonilia sitophila), Mucoraceae (Mucor hiemalis), Pleurostomataceae (Pleurostmophora richardsiae), Hypocreaceae (Gliocladium virens), Pythiaceae (Phytophthora infestans), Chaetomiaceae (Humicola fuscoatra), Eremomycetaceae (Arthrographis cuboidea), incertae sedis (Scytalidium lignicola), Bionectriaceae (Gliocladium roseum) and Arthrodermataceae (Microsporum audouinii). -
Taxonomy of Yeasts
^ÍV/-^ TECHmcAL BULLETIN NO. 1029 May 1951 .— 5 Taxonomy of Yeasts By LYNFERD J. WICKERHAM Zymologist Northern Regional Research Laboratory Bureau of Agricultural and Industrial Chemistry Agricultural Research Administration -- ! f^ R A R Y Jüri¿ 51951 U.Î. ainnrmm sf A«RIOüLTURí UNITED STATES DEPARTMENT OF AcKictrLTURE, WASHINGTON, D. C. PREFACE In early attempts at yeast classification, the characteristics em- ployed for separating the larger groups of yeasts were the ability to grow as filaments, the ability to produce asci which consist of two cells fused together, the shape of the ascospores, the ability to pro- duce a gaseous fermentation of one or more sugars, and the ability to produce pellicles on liquid media. Evidence obtained in the present study indicates that the use of the foregoing characteristics led to the unintentional cleavage of natural, or phylogenetic groups into sections. Moreover, sections of different phylogenetic lines which had in common only one or two of the characteristics just mentioned were often assembled into the same genus. These characteristics, applied by Hansen, Barker, and Klocker dur- ing the early 1900's, continue in use as the basis for separating genera and subgenera in the presently accepted system of yeast classification. As a result, all of the larger genera of both the ascosporogenous and nonascosporogenous yeasts contain dissimilar types. The mixing has been thorough—in many cases the true relationships which exist among species of the different genera have been concealed. Correction of this situation by the arrangement of species m what appear to be phylogenetic lines of related species is believed to be a major advance. -
Thrix Schenckii
DISCOVERY OF ASCOMYCETE CHARACTERISTICS IN SPORO- THRIX SCHENCKII M. Thibaut and M. Ansel Sporothrix schenckii has been stuãied by light microscopy, and also by transmission and scanning electron microscopy. Characteristics of Ascomycetes have been oibserveã at the levei of the cell-wall anã in the synaptic system of the hyphae. Also the perfect state has been discovereã. The four spored asei are formed directly from the mycelium and there is no fructification. Doli- choascus schenckii is the name suggested for this perfect state which constitutes a new genus of the Endomycetaceae. INTRODUCTION tion of the lesions in animais we studied the cytology of the fungus. In light mi Sporothrix schenckii is a fungus that croscopy, we went carefully over the clas- can be a parasite on man or animais as sical cytologic and histologic examinations. well as a saprophyte on dead plants. It In electron microscopy, the specimens were can be found in different states: either prepared acoording to methods previously in the saprophytic mycelial phase corres- described by Thibaut (8). They were ob- ponding to its growth in nature and in served first with the transmission elec culture, or in the yeast — like cells ob- tron microscope (Hitachi HU 11 B, Sie tained in complex cultural conditions cor- mens Elmiskop 1, Jem 100 U and Jem 100 responding to the parasitic state. Until B Jeol) and secondly with the scanning now considered as a Deuteromycete, Spo electron microscope (JSM U 3 Jeol). rothrix schenckii owed its generic name and place in classification to the charac RESULTS teristics of its asexual reproduetion which was then the only one known. -
Phylogeny of Penicillium and the Segregation of Trichocomaceae Into Three Families
available online at www.studiesinmycology.org StudieS in Mycology 70: 1–51. 2011. doi:10.3114/sim.2011.70.01 Phylogeny of Penicillium and the segregation of Trichocomaceae into three families J. Houbraken1,2 and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. *Correspondence: Jos Houbraken, [email protected] Abstract: Species of Trichocomaceae occur commonly and are important to both industry and medicine. They are associated with food spoilage and mycotoxin production and can occur in the indoor environment, causing health hazards by the formation of β-glucans, mycotoxins and surface proteins. Some species are opportunistic pathogens, while others are exploited in biotechnology for the production of enzymes, antibiotics and other products. Penicillium belongs phylogenetically to Trichocomaceae and more than 250 species are currently accepted in this genus. In this study, we investigated the relationship of Penicillium to other genera of Trichocomaceae and studied in detail the phylogeny of the genus itself. In order to study these relationships, partial RPB1, RPB2 (RNA polymerase II genes), Tsr1 (putative ribosome biogenesis protein) and Cct8 (putative chaperonin complex component TCP-1) gene sequences were obtained. The Trichocomaceae are divided in three separate families: Aspergillaceae, Thermoascaceae and Trichocomaceae. The Aspergillaceae are characterised by the formation flask-shaped or cylindrical phialides, asci produced inside cleistothecia or surrounded by Hülle cells and mainly ascospores with a furrow or slit, while the Trichocomaceae are defined by the formation of lanceolate phialides, asci borne within a tuft or layer of loose hyphae and ascospores lacking a slit. -
Agribalyse 3.0 La Base De Donnees Francaise D’Icv Sur L’Agriculture Et L’Alimentation
AGRIBALYSE 3.0 LA BASE DE DONNEES FRANCAISE D’ICV SUR L’AGRICULTURE ET L’ALIMENTATION Rapport méthodologique- Annexes REPORT In partnership with : TABLE OF CONTENTS Annexes ................................................................................................................................................... 6 1 Densité utilisées pour les liquies ...................................................................................................... 6 2 Parts non comestibles – matière première végétale et oeufs .......................................................... 7 3 Mix de consummation de matière premières pour les aliments les plus emblématiques consommés en France, source de données et années ................................................................... 9 4 Poissons et crustacés : proxy utilisés et parts non commestibles ................................................. 13 6 Poissons et crustacés : jeux de données exclus et nouveaux jeux de données ........................... 18 7 Mise à jour des jeux de données pour la viande de bœuf dans ACYVIA – prise en compte des allocations économiques ................................................................................................................ 19 7.1 Identified error ........................................................................................................................... 19 7.2 Updates to datasets in Agribalyse® 3.0 ................................................................................... 19 7.3 Results ..................................................................................................................................... -
The 100 Years of the Fungus Collection Mucl 1894-1994
THE 100 YEARS OF THE FUNGUS COLLECTION MUCL 1894-1994 Fungal Taxonomy and Tropical Mycology: Quo vadis ? Taxonomy and Nomenclature of the Fungi Grégoire L. Hennebert Catholic University of Louvain, Belgium Notice of the editor This document is now published as an archive It is available on www.Mycotaxon.com It is also produced on CD and in few paperback copies G. L. Hennebert ed. Published by Mycotaxon, Ltd. Ithaca, New York, USA December 2010 ISBN 978-0-930845-18-6 (www pdf version) ISBN 978-0-930845-17-9 (paperback version) DOI 10.5248/2010MUCL.pdf 1894-1994 MUCL Centenary CONTENTS Lists of participants 8 Forword John Webser 13 PLENARY SESSION The 100 Year Fungus Culture Collection MUCL, June 29th, 1994 G.L. Hennebert, UCL Mycothèque de l'Université Catholique de Louvain (MUCL) 17 D. Hawksworth, IMI, U.K. Fungal genetic resource collections and biodiversity. 27 D. van der Mei, CBS, MINE, Netherlands The fungus culture collections in Europe. 34 J. De Brabandere, BCCM, Belgium The Belgian Coordinated Collections of Microorganisms. 40 Fungal Taxonomy and tropical Mycology G.L. Hennebert, UCL Introduction. Fungal taxonomy and tropical mycology: Quo vadis ? 41 C.P. Kurtzman, NRRL, USA Molecular taxonomy in the yeast fungi: present and future. 42 M. Blackwell, Louisiana State University, USA Phylogeny of filamentous fungi deduced from analysis of molecular characters: present and future. 52 J. Rammeloo, National Botanical Garden, Belgium Importance of morphological and anatomical characters in fungal taxonomy. 57 M.F. Roquebert, Natural History Museum, France Possible progress of modern morphological analysis in fungal taxonomy. 63 A.J.