The Role of Quantum Dynamics in Covalent Bonding – a Comparison of the Thomas-Fermi and Hückel Models
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Quantum Crystallography†
Chemical Science View Article Online MINIREVIEW View Journal | View Issue Quantum crystallography† Simon Grabowsky,*a Alessandro Genoni*bc and Hans-Beat Burgi*de Cite this: Chem. Sci.,2017,8,4159 ¨ Approximate wavefunctions can be improved by constraining them to reproduce observations derived from diffraction and scattering experiments. Conversely, charge density models, incorporating electron-density distributions, atomic positions and atomic motion, can be improved by supplementing diffraction Received 16th December 2016 experiments with quantum chemically calculated, tailor-made electron densities (form factors). In both Accepted 3rd March 2017 cases quantum chemistry and diffraction/scattering experiments are combined into a single, integrated DOI: 10.1039/c6sc05504d tool. The development of quantum crystallographic research is reviewed. Some results obtained by rsc.li/chemical-science quantum crystallography illustrate the potential and limitations of this field. 1. Introduction today's organic, inorganic and physical chemistry. These tools are usually employed separately. Diffraction and scattering Quantum chemistry methods and crystal structure determina- experiments provide structures at the atomic scale, while the Creative Commons Attribution 3.0 Unported Licence. tion are highly developed research tools, indispensable in techniques of quantum chemistry provide wavefunctions and aUniversitat¨ Bremen, Fachbereich 2 – Biologie/Chemie, Institut fur¨ Anorganische eUniversitat¨ Zurich,¨ Institut fur¨ Chemie, Winterthurerstrasse 190, CH-8057 Zurich,¨ Chemie und Kristallographie, Leobener Str. NW2, 28359 Bremen, Germany. Switzerland E-mail: [email protected] † Dedicated to Prof. Louis J. Massa on the occasion of his 75th birthday and to bCNRS, Laboratoire SRSMC, UMR 7565, Vandoeuvre-l`es-Nancy, F-54506, France Prof. Dylan Jayatilaka on the occasion of his 50th birthday in recognition of their cUniversit´e de Lorraine, Laboratoire SRSMC, UMR 7565, Vandoeuvre-l`es-Nancy, F- pioneering contributions to the eld of X-ray quantum crystallography. -
Quantum Reform
feature Quantum reform Leonie Mueck Quantum computers potentially offer a faster way to calculate chemical properties, but the exact implications of this speed-up have only become clear over the last year. The first quantum computers are likely to enable calculations that cannot be performed classically, which might reform quantum chemistry — but we should not expect a revolution. t had been an exhausting day at the 2012 International Congress of Quantum IChemistry with countless presentations reporting faster and more accurate methods for calculating chemical information using computers. In the dry July heat of Boulder, Colorado, a bunch of young researchers decided to end the day with a cool beer, but the scientific discussion didn’t fade away. Thoughts on the pros and cons of all the methods — the approximations they involved and the chemical problems that they could solve — bounced across the table, until somebody said “Anyway, in a few years we will have a quantum computer and our approximate methods will be obsolete”. An eerie silence followed. What a frustrating thought! They were devoting their careers to quantum chemistry — working LIBRARY PHOTO RICHARD KAIL/SCIENCE tirelessly on applying the laws of quantum mechanics to treat complex chemical of them offering a different trade-off between cannot do on a ‘classical’ computer, it does problems with a computer. And in one fell accuracy and computational feasibility. not look like all the conventional quantum- swoop, would all of those efforts be wasted Enter the universal quantum computer. chemical methods will become obsolete or as chemists turn to quantum computers and This dream machine would basically work that quantum chemists will be out of their their enormous computing power? like a normal digital computer; it would jobs in the foreseeable future. -
Aromaticity Sem- Ii
AROMATICITY SEM- II In 1931, German chemist and physicist Sir Erich Hückel proposed a theory to help determine if a planar ring molecule would have aromatic properties .This is a very popular and useful rule to identify aromaticity in monocyclic conjugated compound. According to which a planar monocyclic conjugated system having ( 4n +2) delocalised (where, n = 0, 1, 2, .....) electrons are known as aromatic compound . For example: Benzene, Naphthalene, Furan, Pyrrole etc. Criteria for Aromaticity 1) The molecule is cyclic (a ring of atoms) 2) The molecule is planar (all atoms in the molecule lie in the same plane) 3) The molecule is fully conjugated (p orbitals at every atom in the ring) 4) The molecule has 4n+2 π electrons (n=0 or any positive integer Why 4n+2π Electrons? According to Hückel's Molecular Orbital Theory, a compound is particularly stable if all of its bonding molecular orbitals are filled with paired electrons. - This is true of aromatic compounds, meaning they are quite stable. - With aromatic compounds, 2 electrons fill the lowest energy molecular orbital, and 4 electrons fill each subsequent energy level (the number of subsequent energy levels is denoted by n), leaving all bonding orbitals filled and no anti-bonding orbitals occupied. This gives a total of 4n+2π electrons. - As for example: Benzene has 6π electrons. Its first 2π electrons fill the lowest energy orbital, and it has 4π electrons remaining. These 4 fill in the orbitals of the succeeding energy level. The criteria for Antiaromaticity are as follows: 1) The molecule must be cyclic and completely conjugated 2) The molecule must be planar. -
Quantum Chemistry and Spectroscopy – Spring 2018
CHE 336 – Quantum Chemistry and Spectroscopy – Spring 2018 Instructor: Dr. Jessica Sarver Email: [email protected] Office: HSC 364 (email hours: 8 am – 10 pm) Office Hours: 10am-12pm Tuesday, 2-3pm Wednesday, 10:30-11:30am Friday, or by appointment Course Description (from Westminster undergraduate catalog) Quantum chemistry and spectroscopy is the study of the microscopic behavior of matter and its interaction with electromagnetic radiation. Topics include the formulation and application of quantum mechanical models, atomic and molecular structure, and various spectroscopic techniques. Laboratory activities demonstrate the fundamental principles of physical chemistry. Methods that will be used during the laboratory portion include: polarimetry, UV-Vis and fluorescence spectroscopies, electrochemistry, and computational/molecular modeling. Prerequisites: C- grade in CHE 117 and MTH 152 and PHY 152. Course Outcomes The chemistry major outcomes are: • Describe and explain quantum theory and the three quantum mechanical models of motion. • Describe and explain how these theories/models are applied and incorporated to applications of atomic/molecular structure and spectroscopy. • Describe and explain the principles of four major types of spectroscopy and their applications. • Describe and explain the measurable thermodynamic parameters for physical and chemical processes and equilibria. • Describe and explain how chemical kinetics can be used to investigate time-dependent processes. • Solve mathematical problems based on physical chemical principles and connect the numerical results with these principles. Textbook The text for this course is Physical Chemistry, 10th Ed. by Atkins and de Paula. Readings and problem set questions will be assigned from this text. You are strongly urged to get a copy of this textbook and complete all the assigned readings and homework. -
AROMATIC COMPOUNDS Aromaticity
AROMATICITY AROMATIC COMPOUNDS Aromaticity Benzene - C6H6 H H H H H H H H H H H H Kekulé and the Structure of Benzene Kekule benzene: two forms are in rapid equilibrium 154 pm 134 pm • All bonds are 140 pm (intermediate between C-C and C=C) • C–C–C bond angles are 120° • Structure is planar, hexagonal A Resonance Picture of Bonding in Benzene resonance hybrid 6 -electron delocalized over 6 carbon atoms The Stability of Benzene Aromaticity: cyclic conjugated organic compounds such as benzene, exhibit special stability due to resonance delocalization of -electrons. Heats of hydrogenation + H2 + 120 KJ/mol + 2 H2 + 230 KJ/mol calc'd value= 240 KJ/mol 10 KJ/mol added stability + 3 H 2 + 208 KJ/mol calc'd value= 360 KJ/mol 152 KJ/mol added stability + 3 H2 + 337 KJ/mol 1,3,5-Hexatriene - conjugated but not cyclic Resonance energy of benzene is 129 - 152 KJ/mol An Orbital Hybridization View of Bonding in Benzene • Benzene is a planar, hexagonal cyclic hydrocarbon • The C–C–C bond angles are 120° = sp2 hybridized • Each carbon possesses an unhybridized p-orbital, which makes up the conjugated -system. • The six -electrons are delocalized through the -system The Molecular Orbitals of Benzene - the aromatic system of benzene consists of six p-orbitals (atomic orbitals). Benzene must have six molecular orbitals. Y6 Y4 Y5 six p-orbitals Y2 Y3 Y1 Degenerate orbitals: Y : zero nodes orbitals that have the 1 Bonding same energy Y2 and Y3: one node Y and Y : two nodes 4 5 Anti-bonding Y6: three node Substituted Derivatives of Benzene and Their Nomenclature -
Complex Chemical Reaction Networks from Heuristics-Aided Quantum Chemistry
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Harvard University - DASH Complex Chemical Reaction Networks from Heuristics-Aided Quantum Chemistry The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters. Citation Rappoport, Dmitrij, Cooper J. Galvin, Dmitry Zubarev, and Alán Aspuru-Guzik. 2014. “Complex Chemical Reaction Networks from Heuristics-Aided Quantum Chemistry.” Journal of Chemical Theory and Computation 10 (3) (March 11): 897–907. Published Version doi:10.1021/ct401004r Accessed February 19, 2015 5:14:37 PM EST Citable Link http://nrs.harvard.edu/urn-3:HUL.InstRepos:12697373 Terms of Use This article was downloaded from Harvard University's DASH repository, and is made available under the terms and conditions applicable to Open Access Policy Articles, as set forth at http://nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#OAP (Article begins on next page) Complex Chemical Reaction Networks from Heuristics-Aided Quantum Chemistry Dmitrij Rappoport,∗,† Cooper J Galvin,‡ Dmitry Yu. Zubarev,† and Alán Aspuru-Guzik∗,† Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA, and Pomona College, 333 North College Way, Claremont, CA 91711, USA E-mail: [email protected]; [email protected] Abstract While structures and reactivities of many small molecules can be computed efficiently and accurately using quantum chemical methods, heuristic approaches remain essential for mod- eling complex structures and large-scale chemical systems. Here we present heuristics-aided quantum chemical methodology applicable to complex chemical reaction networks such as those arising in metabolism and prebiotic chemistry. -
Introduction to Quantum Chemistry
Chem. 140B Dr. J.A. Mack Introduction to Quantum Chemistry Why as a chemist, do you need to learn this material? 140B Dr. Mack 1 Without Quantum Mechanics, how would you explain: • Periodic trends in properties of the elements • Structure of compounds e.g. Tetrahedral carbon in ethane, planar ethylene, etc. • Bond lengths/strengths • Discrete spectral lines (IR, NMR, Atomic Absorption, etc.) • Electron Microscopy & surface science Without Quantum Mechanics, chemistry would be a purely empirical science. (We would be no better than biologists…) 140B Dr. Mack 2 1 Classical Physics On the basis of experiments, in particular those performed by Galileo, Newton came up with his laws of motion: 1. A body moves with a constant velocity (possibly zero) unless it is acted upon by a force. 2. The “rate of change of motion”, i.e. the rate of change of momentum, is proportional to the impressed force and occurs in the direction of the applied force. 3. To every action there is an equal and opposite reaction. 4. The gravitational force of attraction between two bodies is proportional to the product of their masses and inversely proportional to the square of the distance between them. m m F = G × 1 2 r 2 140B Dr. Mack 3 The Failures of Classical Mechanics 1. Black Body Radiation: The Ultraviolet Catastrophe 2. The Photoelectric Effect: Einstein's belt buckle 3. The de Broglie relationship: Dude you have a wavelength! 4. The double-slit experiment: More wave/particle duality 5. Atomic Line Spectra: The 1st observation of quantum levels 140B Dr. Mack 4 2 Black Body Radiation Light Waves: Electromagnetic Radiation Light is composed of two perpendicular oscillating vectors waves: A magnetic field & an electric field As the light wave passes through a substance, the oscillating fields can stimulate the movement of electrons in a substance. -
Computational Analysis of the Mechanism of Chemical Reactions
Computational Analysis of the Mechanism of Chemical Reactions in Terms of Reaction Phases: Hidden Intermediates and Hidden Transition States ELFI KRAKA* AND DIETER CREMER Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, Texas 75275-0314 RECEIVED ON JANUARY 9, 2009 CON SPECTUS omputational approaches to understanding chemical reac- Ction mechanisms generally begin by establishing the rel- ative energies of the starting materials, transition state, and products, that is, the stationary points on the potential energy surface of the reaction complex. Examining the intervening spe- cies via the intrinsic reaction coordinate (IRC) offers further insight into the fate of the reactants by delineating, step-by- step, the energetics involved along the reaction path between the stationary states. For a detailed analysis of the mechanism and dynamics of a chemical reaction, the reaction path Hamiltonian (RPH) and the united reaction valley approach (URVA) are an effi- cient combination. The chemical conversion of the reaction complex is reflected by the changes in the reaction path direction t(s) and reaction path curvature k(s), both expressed as a function of the path length s. This information can be used to partition the reaction path, and by this the reaction mech- anism, of a chemical reaction into reaction phases describing chemically relevant changes of the reaction complex: (i) a contact phase characterized by van der Waals interactions, (ii) a preparation phase, in which the reactants prepare for the chemical processes, (iii) one or more transition state phases, in which the chemical processes of bond cleavage and bond formation take place, (iv) a product adjustment phase, and (v) a separation phase. -
Six Phases of Cosmic Chemistry
Six Phases of Cosmic Chemistry Lukasz Lamza The Pontifical University of John Paul II Department of Philosophy, Chair of Philosophy of Nature Kanonicza 9, Rm. 203 31-002 Kraków, Poland e-mail: [email protected] 1. Introduction The steady development of astrophysical and cosmological sciences has led to a growing appreciation of the continuity of cosmic history throughout which all known phenomena come to being. This also includes chemical phenomena and there are numerous theoretical attempts to rewrite chemistry as a “historical” science (Haken 1978; Earley 2004). It seems therefore vital to organize the immense volume of chemical data – from astrophysical nuclear chemistry to biochemistry of living cells – in a consistent and quantitative fashion, one that would help to appreciate the unfolding of chemical phenomena throughout cosmic time. Although numerous specialist reviews exist (e.g. Shaw 2006; Herbst 2001; Hazen et al. 2008) that illustrate the growing appreciation for cosmic chemical history, several issues still need to be solved. First of all, such works discuss only a given subset of cosmic chemistry (astrochemistry, chemistry of life etc.) using the usual tools and languages of these particular disciplines which does not facilitate drawing large-scale conclusions. Second, they discuss the history of chemical structures and not chemical processes – which implicitly leaves out half of the totality chemical phenomena as non-historical. While it may now seem obvious that certain chemical structures such as aromatic hydrocarbons or pyrazines have a certain cosmic “history”, it might cause more controversy to argue that chemical processes such as catalysis or polymerization also have their “histories”. -
Bsc Chemistry
Subject Chemistry Paper No and Title Paper 1: ORGANIC CHEMISTRY- I (Nature of Bonding and Stereochemistry) Module No and Module 3: Hyper-Conjugation Title Module Tag CHE_P1_M3 CHEMISTRY PAPER No. 1: ORGANIC CHEMISTRY- I (Nature of Bonding and Stereochemistry) Module No. 3: Hyper-Conjugation TABLE OF CONTENT 1. Learning outcomes 2. Introduction 3. Hyperconjugation 4. Requirements for Hyperconjugation 5. Consequences and Applications of Hyperconjugation 6. Reverse Hyperconjugation 7. Summary CHEMISTRY PAPER No. 1: ORGANIC CHEMISTRY- I (Nature of Bonding and Stereochemistry) Module No. 3: Hyper-Conjugation 1. Learning Outcomes After studying this module you shall be able to: Understand the concept of hyperconjugation. Know about the structural requirements in a molecule to show hyperconjugation. Learn about the important consequences and applications of hyperconjugation. Comprehend the concept of reverse hyperconjugation. 2. Introduction In conjugation, we have studied that the electrons move from one p orbital to other which are aligned in parallel planes. Is it possible for electron to jump from p orbital to sp3 orbital that are not parallelly aligned with one another? The answer is yes. This type of conjugation is not normal, it is extra-ordinary. Hence, the name hyper-conjugation. It is also know as no-bond resonance. Let us study more about it. 3. Hyperconjugation The normal electron releasing inductive effect (+I effect) of alkyl groups is in the following order: But it was observed by Baker and Nathan that in conjugated system, the attachment of alkyl groups reverse their capability of electron releasing. They suggested that alkyl groups are capable of releasing electrons by some process other than inductive. -
Sc-Homoaromaticity
This is a repository copy of Modern Valence-Bond Description of Homoaromaticity. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/106288/ Version: Accepted Version Article: Karadakov, Peter Borislavov orcid.org/0000-0002-2673-6804 and Cooper, David L. (2016) Modern Valence-Bond Description of Homoaromaticity. Journal of Physical Chemistry A. pp. 8769-8779. ISSN 1089-5639 https://doi.org/10.1021/acs.jpca.6b09426 Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ Modern Valence-Bond Description of Homoaromaticity Peter B. Karadakov; and David L. Cooper; Department of Chemistry, University of York, Heslington, York, YO10 5DD, U.K. Department of Chemistry, University of Liverpool, Liverpool L69 7ZD, U.K. Abstract Spin-coupled (SC) theory is used to obtain modern valence-bond (VB) descriptions of the electronic structures of local minimum and transition state geometries of three species that have been con- C sidered to exhibit homoconjugation and homoaromaticity: the homotropenylium ion, C8H9 , the C cycloheptatriene neutral ring, C7H8, and the 1,3-bishomotropenylium ion, C9H11. -
Quantum Mechanics of Atoms and Molecules Lectures, the University of Manchester 2005
Quantum Mechanics of Atoms and Molecules Lectures, The University of Manchester 2005 Dr. T. Brandes April 29, 2005 CONTENTS I. Short Historical Introduction : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : 1 I.1 Atoms and Molecules as a Concept . 1 I.2 Discovery of Atoms . 1 I.3 Theory of Atoms: Quantum Mechanics . 2 II. Some Revision, Fine-Structure of Atomic Spectra : : : : : : : : : : : : : : : : : : : : : 3 II.1 Hydrogen Atom (non-relativistic) . 3 II.2 A `Mini-Molecule': Perturbation Theory vs Non-Perturbative Bonding . 6 II.3 Hydrogen Atom: Fine Structure . 9 III. Introduction into Many-Particle Systems : : : : : : : : : : : : : : : : : : : : : : : : : 14 III.1 Indistinguishable Particles . 14 III.2 2-Fermion Systems . 18 III.3 Two-electron Atoms and Ions . 23 IV. The Hartree-Fock Method : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : 24 IV.1 The Hartree Equations, Atoms, and the Periodic Table . 24 IV.2 Hamiltonian for N Fermions . 26 IV.3 Hartree-Fock Equations . 28 V. Molecules : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : 35 V.1 Introduction . 35 V.2 The Born-Oppenheimer Approximation . 36 + V.3 The Hydrogen Molecule Ion H2 . 39 V.4 Hartree-Fock for Molecules . 45 VI. Time-Dependent Fields : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : 48 VI.1 Time-Dependence in Quantum Mechanics . 48 VI.2 Time-dependent Hamiltonians . 50 VI.3 Time-Dependent Perturbation Theory . 53 VII.Interaction with Light : : : : : : : : : : : : : : : : : : : : : : :