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Topological Analysis of the Metal-Metal Bond: a Tutorial Review Christine Lepetit, Pierre Fau, Katia Fajerwerg, Myrtil L
Topological analysis of the metal-metal bond: A tutorial review Christine Lepetit, Pierre Fau, Katia Fajerwerg, Myrtil L. Kahn, Bernard Silvi To cite this version: Christine Lepetit, Pierre Fau, Katia Fajerwerg, Myrtil L. Kahn, Bernard Silvi. Topological analysis of the metal-metal bond: A tutorial review. Coordination Chemistry Reviews, Elsevier, 2017, 345, pp.150-181. 10.1016/j.ccr.2017.04.009. hal-01540328 HAL Id: hal-01540328 https://hal.sorbonne-universite.fr/hal-01540328 Submitted on 16 Jun 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Topological analysis of the metal-metal bond: a tutorial review Christine Lepetita,b, Pierre Faua,b, Katia Fajerwerga,b, MyrtilL. Kahn a,b, Bernard Silvic,∗ aCNRS, LCC (Laboratoire de Chimie de Coordination), 205, route de Narbonne, BP 44099, F-31077 Toulouse Cedex 4, France. bUniversité de Toulouse, UPS, INPT, F-31077 Toulouse Cedex 4, i France cSorbonne Universités, UPMC, Univ Paris 06, UMR 7616, Laboratoire de Chimie Théorique, case courrier 137, 4 place Jussieu, F-75005 Paris, France Abstract This contribution explains how the topological methods of analysis of the electron density and related functions such as the electron localization function (ELF) and the electron localizability indicator (ELI-D) enable the theoretical characterization of various metal-metal (M-M) bonds (multiple M-M bonds, dative M-M bonds). -
Planar Cyclopenten‐4‐Yl Cations: Highly Delocalized Π Aromatics
Angewandte Research Articles Chemie How to cite: Angew.Chem. Int. Ed. 2020, 59,18809–18815 Carbocations International Edition: doi.org/10.1002/anie.202009644 German Edition: doi.org/10.1002/ange.202009644 Planar Cyclopenten-4-yl Cations:Highly Delocalized p Aromatics Stabilized by Hyperconjugation Samuel Nees,Thomas Kupfer,Alexander Hofmann, and Holger Braunschweig* 1 B Abstract: Theoretical studies predicted the planar cyclopenten- being energetically favored by 18.8 kcalmolÀ over 1 (MP3/ 4-yl cation to be aclassical carbocation, and the highest-energy 6-31G**).[11–13] Thebishomoaromatic structure 1B itself is + 1 isomer of C5H7 .Hence,its existence has not been verified about 6–14 kcalmolÀ lower in energy (depending on the level experimentally so far.Wewere now able to isolate two stable of theory) than the classical planar structure 1C,making the derivatives of the cyclopenten-4-yl cation by reaction of bulky cyclopenten-4-yl cation (1C)the least favorable isomer.Early R alanes Cp AlBr2 with AlBr3.Elucidation of their (electronic) solvolysis studies are consistent with these findings,with structures by X-raydiffraction and quantum chemistry studies allylic 1A being the only observable isomer, notwithstanding revealed planar geometries and strong hyperconjugation the nature of the studied cyclopenteneprecursor.[14–18] Thus, interactions primarily from the C Al s bonds to the empty p attempts to generate isomer 1C,orits homoaromatic analog À orbital of the cationic sp2 carbon center.Aclose inspection of 1B,bysolvolysis of 4-Br/OTs-cyclopentene -
Introduction to Aromaticity
Introduction to Aromaticity Historical Timeline:1 Spotlight on Benzene:2 th • Early 19 century chemists derive benzene formula (C6H6) and molecular mass (78). • Carbon to hydrogen ratio of 1:1 suggests high reactivity and instability. • However, benzene is fairly inert and fails to undergo reactions that characterize normal alkenes. - Benzene remains inert at room temperature. - Benzene is more resistant to catalytic hydrogenation than other alkenes. Possible (but wrong) benzene structures:3 Dewar benzene Prismane Fulvene 2,4- Hexadiyne - Rearranges to benzene at - Rearranges to - Undergoes catalytic - Undergoes catalytic room temperature. Faraday’s benzene. hydrogenation easily. hydrogenation easily - Lots of ring strain. - Lots of ring strain. - Lots of ring strain. 1 Timeline is computer-generated, compiled with information from pg. 594 of Bruice, Organic Chemistry, 4th Edition, Ch. 15.2, and from Chemistry 14C Thinkbook by Dr. Steven Hardinger, Version 4, p. 26 2 Chemistry 14C Thinkbook, p. 26 3 Images of Dewar benzene, prismane, fulvene, and 2,4-Hexadiyne taken from Chemistry 14C Thinkbook, p. 26. Kekulé’s solution: - “snake bites its own tail” (4) Problems with Kekulé’s solution: • If Kekulé’s structure were to have two chloride substituents replacing two hydrogen atoms, there should be a pair of 1,2-dichlorobenzene isomers: one isomer with single bonds separating the Cl atoms, and another with double bonds separating the Cl atoms. • These isomers were never isolated or detected. • Rapid equilibrium proposed, where isomers interconvert so quickly that they cannot be isolated or detected. • Regardless, Kekulé’s structure has C=C’s and normal alkene reactions are still expected. - But the unusual stability of benzene still unexplained. -
On the Harmonic Oscillator Model of Electron Delocalization (HOMED) Index and Its Application to Heteroatomic Π-Electron Systems
Symmetry 2010, 2, 1485-1509; doi:10.3390/sym2031485 OPEN ACCESS symmetry ISSN 2073-8994 www.mdpi.com/journal/symmetry Article On the Harmonic Oscillator Model of Electron Delocalization (HOMED) Index and its Application to Heteroatomic π-Electron Systems Ewa D. Raczyñska 1, *, Małgorzata Hallman 1, Katarzyna Kolczyñska 2 and Tomasz M. Stêpniewski 2 1 Department of Chemistry, Warsaw University of Life Sciences (SGGW), ul. Nowoursynowska 159c, 02-776 Warszawa, Poland 2 Interdisciplinary Department of Biotechnology, Warsaw University of Life Sciences (SGGW), ul. Nowoursynowska 166, 02-776 Warszawa, Poland * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +48-22-59-37623; Fax: +49-22-59-37635. Received: 23 April 2010; in revised form: 19 May 2010 / Accepted: 7 July 2010 / Published: 12 July 2010 Abstract: The HOMA (Harmonic Oscillator Model of Aromaticity) index, reformulated in 1993, has been very often applied to describe π-electron delocalization for mono- and polycyclic π-electron systems. However, different measures of π-electron delocalization were employed for the CC, CX, and XY bonds, and this index seems to be inappropriate for compounds containing heteroatoms. In order to describe properly various resonance effects (σ-π hyperconjugation, n-π conjugation, π-π conjugation, and aromaticity) possible for heteroatomic π-electron systems, some modifications, based on the original HOMA idea, were proposed and tested for simple DFT structures containing C, N, and O atoms. An abbreviation HOMED was used for the modified index. Keywords: geometry-based index; π -electron delocalization; σ - π hyperconjugation; n-π conjugation; π-π conjugation; aromaticity; heteroatomic compounds; DFT 1. -
Elucidating How Wood Adhesives Bond to Wood Cell Walls Using High-Resolution Solution-State NMR Spectroscopy
Elucidating How Wood Adhesives Bond to Wood Cell Walls using High-Resolution Solution-State NMR Spectroscopy Daniel J. Yelle U.S. Forest Service, Forest Products Laboratory Madison, WI, 53726, USA [email protected] Introduction Lignin, 25-30% of wood, is a phenolic polymer made Some extensively used wood adhesives, such as up of branched phenylpropanoid units that are capable of pMDI (polymeric methylene diphenyl diisocyanate) and reacting with other phenols during adhesive bonding. PF (phenol formaldehyde) have shown excellent adhesion Model compound studies have shown that under alkaline properties with wood. However, distinguishing whether conditions and ≥100 °C, β-aryl ether linkages release for- the strength is due to physical bonds (i.e., van der Waals, maldehyde to give vinyl ether linkages (Figure 2a) [10]. London, or hydrogen bond forces) or covalent bonds be- Phenylcourmaran linkages release formaldehyde in a simi- tween the adherend and the adhesive is not fully under- lar fashion to give stilbene linkages (Figure 2b) [10]. 13C stood. Previous studies, where pMDI model compounds NMR spectroscopy showed that most of this released for- were reacted with wood, showed that carbamate (urethane) maldehyde ends up as the methylene bridge between the 5- formation with wood polymers is only possible when: 1. positions on guaiacyl units (Figure 2c) [11]. the number of moles of isocyanate is significantly higher a. HO H O than the moles of water molecules in the wood, 2. high γ γ HO β β α O 4 α β O 4 α O 4 temperatures are used, and 3. the isocyanate-based com- OCH3 OCH - OH 3 OCH3 O + CH pound is of low molecular weight [1]. -
Chapter 1 Tropone and Tropolone
School of Molecular and Life Sciences New Routes to Troponoid Natural Products Jason Matthew Wells This thesis is presented for the Degree of Doctor of Philosophy of Curtin University November 2018 Declaration To the best of my knowledge and belief this thesis contains no material previously pub- lished by any other person except where due acknowledgement has been made. This thesis contains no material which has been accepted for the award of any other degree or diploma in any other university. Signature: Date: i Abstract Malaria is an infectious disease found in humans and other animals, it is caused by a single-cell parasite of the Plasmodium genus with many different substrains. Of these, P. falciparum is the most deadly to humans causing the majority of deaths. Although research into the area of antimalarial compounds is wide spread, few have been devel- oped with new structural features. Cordytropolone 37 is a natural product isolated in 2001 from the insect pathogenic fungus Cordyceps sp. BCC 1681 and has been shown to have antimalarial activity against P. falciparum. It has a structure unrelated to antimalarial com- pounds currently used in therapy. It does not contain a peroxide bridge as with artemisinin 25 or quinoline rings as with chloroquine 22. This unique structure indicates that it could possibly interact with the malaria parasite in a fashion unlike current treatments. In order for cordytropolone to be further developed as a potential treatment, it must first be synthe- sised in a laboratory environment. This study attempts to develop the first total synthesis of cordytropolone. H HO O N O O N O N H H H O O Cl HO O 22 25 37 Figure 0.0.1: Cordytropolone 37 has a unique structure compared to the current common malaria treatments The first method investigated towards the total synthesis of cordytropolone involved an intramolecular Buchner ring expansion. -
Synthesis, Structure and Attempted Polymerization of a Diepoxide Macrocycle Paul Yarincik Sacred Heart University
Sacred Heart University DigitalCommons@SHU Chemistry & Physics Faculty Publications Chemistry and Physics 10-2012 Synthesis, Structure and Attempted Polymerization of a Diepoxide Macrocycle Paul Yarincik Sacred Heart University Jeffrey H. Glans Sacred Heart University, [email protected] Follow this and additional works at: http://digitalcommons.sacredheart.edu/chem_fac Part of the Polymer Chemistry Commons Recommended Citation Yarincik, Paul and Glans, Jeffrey H., "Synthesis, Structure and Attempted Polymerization of a Diepoxide Macrocycle" (2012). Chemistry & Physics Faculty Publications. 1. http://digitalcommons.sacredheart.edu/chem_fac/1 This Article is brought to you for free and open access by the Chemistry and Physics at DigitalCommons@SHU. It has been accepted for inclusion in Chemistry & Physics Faculty Publications by an authorized administrator of DigitalCommons@SHU. For more information, please contact [email protected]. Letters in Organic Chemistry, 2012, 9, 545-548 545 Synthesis, Structure and Attempted Polymerization of a Diepoxide Macrocycle Paul Yarincik and Jeffrey H. Glans* Department of Chemistry, Sacred Heart University, Fairfield, CT 06825, USA Received October 19, 2011: Revised December 31, 2011: Accepted January 04, 2012 Abstract: A novel diepoxide containing paracyclophane was synthesized by peracid oxidation of a known paracyclo- phane diene. The resulting diepoxide was characterized. It was investigated as a potential monomer for a cyclophane con- taining polyether by cationic ring opening polymerization. None of the standard catalyst systems for such a polymeriza- tion were successful in producing polymer. Keywords: Cationic polymerization, cyclophane, diepoxide, macrocycle. R INTRODUCTION R O O O+ Cationic polymerization of olefins is one of the major R+ routes to high molecular weight polymers [1]. The mecha- O O+ O nism involves nucleophilic attack of the alkene functional group on the electron poor initiator (initiation) or the grow- ing cationic chain end (propagation). -
Course No: CH15101CR Title: Inorganic Chemistry (03 Credits)
Course No: CH15101CR Title: Inorganic Chemistry (03 Credits) Max. Marks: 75 Duration: 48 Contact hours (48L) End Term Exam: 60 Marks Continuous Assessment: 15 Marks Unit-I Stereochemistry and Bonding in the Compounds of Main Group Elements (16 Contact hours) Valence bond theory: Energy changes taking place during the formation of diatomic molecules; factors affecting the combined wave function. Bent's rule and energetics of hybridization. Resonance: Conditions, resonance energy and examples of some inorganic molecules/ions. Odd Electron Bonds: Types, properties and molecular orbital treatment. VSEPR: Recapitulation of assumptions, shapes of trigonal bypyramidal, octahedral and - 2- 2- pentagonal bipyramidal molecules / ions. (PCl5, VO3 , SF6, [SiF6] , [PbCl6] and IF7). Limitations of VSEPR theory. Molecular orbital theory: Salient features, variation of electron density with internuclear distance. Relative order of energy levels and molecular orbital diagrams of some heterodiatomic molecules /ions. Molecular orbital diagram of polyatomic molecules / ions. Delocalized Molecular Orbitals: Butadiene, cyclopentadiene and benzene. Detection of Hydrogen Bond: UV-VIS, IR and X-ray. Importance of hydrogen bonding. Unit-II Metal-Ligand Equilibria in Solution (16 Contact hours) Stepwise and overall formation constants. Inert & labile complexes. Stability of uncommon oxidation states. Metal Chelates: Characteristics, Chelate effect and the factors affecting stability of metal chelates. Determination of formation constants by pH- metry and spectrophotometry. Structural (ionic radii) and thermodynamic (hydration and lattice energies) effects of crystal field splitting. Jahn -Teller distortion, spectrochemical series and the nephleuxetic effect. Evidence of covalent bonding in transition metal complexes. Unit-III Pi-acid Metal Complexes (16 Contact hours) Transition Metal Carbonyls: Carbon monoxide as ligand, synthesis, reactions, structures and bonding of mono- and poly-nuclear carbonyls. -
Aromaticity Sem- Ii
AROMATICITY SEM- II In 1931, German chemist and physicist Sir Erich Hückel proposed a theory to help determine if a planar ring molecule would have aromatic properties .This is a very popular and useful rule to identify aromaticity in monocyclic conjugated compound. According to which a planar monocyclic conjugated system having ( 4n +2) delocalised (where, n = 0, 1, 2, .....) electrons are known as aromatic compound . For example: Benzene, Naphthalene, Furan, Pyrrole etc. Criteria for Aromaticity 1) The molecule is cyclic (a ring of atoms) 2) The molecule is planar (all atoms in the molecule lie in the same plane) 3) The molecule is fully conjugated (p orbitals at every atom in the ring) 4) The molecule has 4n+2 π electrons (n=0 or any positive integer Why 4n+2π Electrons? According to Hückel's Molecular Orbital Theory, a compound is particularly stable if all of its bonding molecular orbitals are filled with paired electrons. - This is true of aromatic compounds, meaning they are quite stable. - With aromatic compounds, 2 electrons fill the lowest energy molecular orbital, and 4 electrons fill each subsequent energy level (the number of subsequent energy levels is denoted by n), leaving all bonding orbitals filled and no anti-bonding orbitals occupied. This gives a total of 4n+2π electrons. - As for example: Benzene has 6π electrons. Its first 2π electrons fill the lowest energy orbital, and it has 4π electrons remaining. These 4 fill in the orbitals of the succeeding energy level. The criteria for Antiaromaticity are as follows: 1) The molecule must be cyclic and completely conjugated 2) The molecule must be planar. -
1 5. Chemical Bonding
5. Chemical Bonding: The Covalent Bond Model 5.1 The Covalent Bond Model Almost all chemical substances are found as aggregates of atoms in the form of molecules and ions produced through the reactions of various atoms of elements except the noble-gas elements which are stable mono-atomic gases. Chemical bond is a term that describes the attractive force that is holding the atoms of the same or different kind of atoms in forming a molecule or ionic solid that has more stability than the individual atoms. Depending on the kinds of atoms participating in the interaction there seem to be three types of bonding: Gaining or Losing Electrons: Ionic bonding: Formed between many ions formed by metal and nonmetallic elements. Sharing Electrons: Covalent bonding: sharing of electrons between two atoms of non-metals. Metallic Bonding: sharing of electrons between many atoms of metals. Ionic Compounds Covalent Compounds Metallic Compounds 1. Metal and non-meal Non-metal and non-meal Metal of one type or, element combinations. elements combinations. combinations of two or metal elements combinations. 2. High melting brittle Gases, liquids, or waxy, low Conducting, high melting, crystalline solids. melting soft solids. malleable, ductile crystalline solids. 3. Do not conduct as a solid Do not conduct electricity at Conduct electricity at solid but conducts electricity any state. and molten states. when molten. 4. Dissolved in water produce Most are soluble in non-polar Insoluble in any type of conducting solutions solvents and few in water. solvents. (electrolytes) and few These solutions are non- are soluble in non-polar conducting (non- solvents. -
Chemical Forces Understanding the Relative Melting/Boiling Points of Two
Chapter 8 – Chemical Forces Understanding the relative melting/boiling points of two substances requires an understanding of the forces acting between molecules of those substances. These intermolecular forces are important for many additional reasons. For example, solubility and vapor pressure are governed by intermolecular forces. The same factors that give rise to intermolecular forces (e.g. bond polarity) can also have a profound impact on chemical reactivity. Chemical Forces Internuclear Distances and Atomic Radii There are four general methods of discussing interatomic distances: van der Waal’s, ionic, covalent, and metallic radii. We will discuss the first three in this section. Each has a unique perspective of the nature of the interaction between interacting atoms/ions. Van der Waal's Radii - half the distance between two nuclei of the same element in the solid state not chemically bonded together (e.g. solid noble gases). In general, the distance of separation between adjacent atoms (not bound together) in the solid state should be the sum of their van der Waal’s radii. F F van der Waal's radii F F Ionic Radii – Ionic radii were discussed in Chapter 4 and you should go back and review that now. One further thing is worth mentioning here. Evidence that bonding really exists and is attractive can be seen in ionic radii. For all simple ionic compounds, the ions attain noble gas configurations (e.g. in NaCl the Na+ ion is isoelectronic to neon and the Cl- ion is isoelectronic to argon). For the sodium chloride example just given, van der Waal’s radii would predict (Table 8.1, p. -
Chapter Eleven: Chemical Bonding
© Adrian Dingle’s Chemistry Pages 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012. All rights reserved. These materials may NOT be copied or redistributed in any way, except for individual class instruction. Revised August 2011 AP TOPIC 8: Chemical Bonding Introduction In the study of bonding we will consider several different types of chemical bond and some of the theories associated with them. TYPES OF BONDING INTRA INTER (Within (inside) compounds) (Interactions between the STRONG molecules of a compound) WEAK Ionic Covalent Hydrogen Bonding Dipole-Dipole London Dispersion (Metal + Non-metal) (Non-metals) (H attached to N, O or F) (Polar molecules) Forces Giant lattice of ions Discrete molecules Strong, permanent dipole Permanent dipoles (Non-polar molecules) Induced dipoles Dative or (Co-ordinate) (Electron deficient species) Discrete molecules To help distinguish the difference in strength of intra and inter bonds consider the process of boiling of water. When water boils the product is steam (gaseous water). The products are not hydrogen and oxygen. This is because the weak inter molecular forces are broken not the much stronger intra molecular forces. C:\Documents and Settings\AdrianD\My Documents\Dropbox\ADCP\apnotes08.doc Page 1 of 26 © Adrian Dingle’s Chemistry Pages 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012. All rights reserved. These materials may NOT be copied or redistributed in any way, except for individual class instruction. Revised August 2011 Intra Bonding Ionic (the transfer of electrons between atoms to form ions that form giant ionic lattices) Atoms have equal numbers of protons and electrons and consequently have no overall charge.