Biodiversity of Rangelands
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Species at Risk on Department of Defense Installations
Species at Risk on Department of Defense Installations Revised Report and Documentation Prepared for: Department of Defense U.S. Fish and Wildlife Service Submitted by: January 2004 Species at Risk on Department of Defense Installations: Revised Report and Documentation CONTENTS 1.0 Executive Summary..........................................................................................iii 2.0 Introduction – Project Description................................................................. 1 3.0 Methods ................................................................................................................ 3 3.1 NatureServe Data................................................................................................ 3 3.2 DOD Installations............................................................................................... 5 3.3 Species at Risk .................................................................................................... 6 4.0 Results................................................................................................................... 8 4.1 Nationwide Assessment of Species at Risk on DOD Installations..................... 8 4.2 Assessment of Species at Risk by Military Service.......................................... 13 4.3 Assessment of Species at Risk on Installations ................................................ 15 5.0 Conclusion and Management Recommendations.................................... 22 6.0 Future Directions............................................................................................. -
A Molecular Phylogeny of the Solanaceae
TAXON 57 (4) • November 2008: 1159–1181 Olmstead & al. • Molecular phylogeny of Solanaceae MOLECULAR PHYLOGENETICS A molecular phylogeny of the Solanaceae Richard G. Olmstead1*, Lynn Bohs2, Hala Abdel Migid1,3, Eugenio Santiago-Valentin1,4, Vicente F. Garcia1,5 & Sarah M. Collier1,6 1 Department of Biology, University of Washington, Seattle, Washington 98195, U.S.A. *olmstead@ u.washington.edu (author for correspondence) 2 Department of Biology, University of Utah, Salt Lake City, Utah 84112, U.S.A. 3 Present address: Botany Department, Faculty of Science, Mansoura University, Mansoura, Egypt 4 Present address: Jardin Botanico de Puerto Rico, Universidad de Puerto Rico, Apartado Postal 364984, San Juan 00936, Puerto Rico 5 Present address: Department of Integrative Biology, 3060 Valley Life Sciences Building, University of California, Berkeley, California 94720, U.S.A. 6 Present address: Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York 14853, U.S.A. A phylogeny of Solanaceae is presented based on the chloroplast DNA regions ndhF and trnLF. With 89 genera and 190 species included, this represents a nearly comprehensive genus-level sampling and provides a framework phylogeny for the entire family that helps integrate many previously-published phylogenetic studies within So- lanaceae. The four genera comprising the family Goetzeaceae and the monotypic families Duckeodendraceae, Nolanaceae, and Sclerophylaceae, often recognized in traditional classifications, are shown to be included in Solanaceae. The current results corroborate previous studies that identify a monophyletic subfamily Solanoideae and the more inclusive “x = 12” clade, which includes Nicotiana and the Australian tribe Anthocercideae. These results also provide greater resolution among lineages within Solanoideae, confirming Jaltomata as sister to Solanum and identifying a clade comprised primarily of tribes Capsiceae (Capsicum and Lycianthes) and Physaleae. -
(Trnf) Pseudogenes Defines a Distinctive Clade in Solanaceae Péter Poczai* and Jaakko Hyvönen
Poczai and Hyvönen SpringerPlus 2013, 2:459 http://www.springerplus.com/content/2/1/459 a SpringerOpen Journal SHORT REPORT Open Access Discovery of novel plastid phenylalanine (trnF) pseudogenes defines a distinctive clade in Solanaceae Péter Poczai* and Jaakko Hyvönen Abstract Background: The plastome of embryophytes is known for its high degree of conservation in size, structure, gene content and linear order of genes. The duplication of entire tRNA genes or their arrangement in a tandem array composed by multiple pseudogene copies is extremely rare in the plastome. Pseudogene repeats of the trnF gene have rarely been described from the chloroplast genome of angiosperms. Findings: We report the discovery of duplicated copies of the original phenylalanine (trnFGAA) gene in Solanaceae that are specific to a larger clade within the Solanoideae subfamily. The pseudogene copies are composed of several highly structured motifs that are partial residues or entire parts of the anticodon, T- and D-domains of the original trnF gene. Conclusions: The Pseudosolanoid clade consists of 29 genera and includes many economically important plants such as potato, tomato, eggplant and pepper. Keywords: Chloroplast DNA (cpDNA); Gene duplications; Phylogeny; Plastome evolution; Tandem repeats; trnL-trnF; Solanaceae Findings of this region. If this is ignored, it will easily lead to situa- The plastid trnT-trnF region has been widely applied to tions where basic requirement of homology of the charac- resolve phylogeny of embryophytes (Quandt and Stech ters used for phylogenetic analyses is compromised. This 2004; Zhao et al. 2011) and to address various questions of might lead to false hypotheses of phylogeny, especially population genetics since the development of universal when they are based on the analyses of only this region. -
Newsletter Index 1-42.Pdf
Indexed through Vol. 42, number 5 June, 2016 Abronia crux-maltae 7(5):5-6 Achillea millefolium 5(8):4 Ackley, Merrel 10(7):2 Acorn muffins 21(3): 8 Aegilops triuncialis 28(7)6-7 Agropyron spicatum 3(9):5-6 Ailanthus altissima 36(1):3-4 Aizoaceae in Nevada 39(9):5-6 Allium 3(4):4-5 Alnus incana 27(1):6; in Nevada 34(2):3-6; 34(6):5 Anderson, Charles Lewis 11(6):7; 11(7):7 Anemopsis californica 33(1):5-7 Antennaria flagellaris 25(8):2-3 Antirrhinum kingii 17(2):6 Ants [discouraging them] 1(7):3 Aquilegia 27(6):3; 28(2):2-3; coerulea 6(3):5 Arabis glaucovalvula 39(1):4-5 Arboretum 11(2):5; 11(3):3 Arc Dome 15(2):3-4 Arctomecon californica 23(6):8-9 Area of critical environmental concern 6(8):6-7 Arenaria pusilla 1(2):3 Aristolochia californica 11(4):3-4 Artemisia tridentata 35(9):2, Asclepiadaceae 1(6):3 Asclepias 23(1):5-6; 26(5):3-4; cryptoceras 5(4):3; 11(5):7; eastwoodiana 11(2):5; speciosa 1(6):2 Ash Meadows 5(2):3-4; 5(3):5-6; 5(4):2; 7(1):3; 8(4):2-3; 8(5):6; 8(6):7-8; 8(8):3-4; 9(1):3; 9(5):4; 10(1):9-10; 10(2):1 Asteraceae 1(5):3 Astragalus ackermanii 6(5):9; bolanderi 41(5):3-5callithrix 7(5):8-9; gummifer 16(4):6; lentiginosus 34(5):3-4; lentiginosus 30(4):4-5; lentiginosus 36(4):2-7; lentiginosus var. -
Inventory of Vascular Plants at Mojave National Preserve & Manzanar Historic Site
Inventory of Vascular Plants at Mojave National Preserve & Manzanar Historic Site For U.S. National Park Service Inventory and Monitoring Program Camissonia boothii ssp. boothii Prepared by James M. André University of California Riverside, Granite Mountains Desert Research Center November 15, 2006 Contract Number: P2128020178 TABLE OF CONTENTS 1.0 INTRODUCTION 1.1 National Inventory and Monitoring Program and Mojave Network 1 1.2 Program Overview 1 1.3 Regional Context and Significance 2 1.3.1 Mojave National Preserve 2 1.3.2 Manzanar Historic Site 4 1.4 Objectives 5 2.0 METHODS 2.1 Herbarium Surveys 7 2.1.1 Database and Bibliographic Query 7 2.2 Field Surveys 7 2.2.1 Mojave National Preserve 7 2.2.2 Manzanar Historic Site 8 2.3 Voucher Specimens 8 2.4 Survey Timing 9 2.5 Field Investigators 9 3.0 RESULTS 3.1 Level of Effort 10 3.2 Summary of Findings - Manzanar Historic Site 10 3.3 Summary of Findings - Mojave National Preserve 14 3.3.1 Field Surveys 14 3.3.2 New Vascular Plant Taxa for MOJA 14 3.3.3 Special-Status Plants 33 3.3.4 Non-Native Alien Plants 40 4.0 DISCUSSION 4.1 Summary 41 4.2 Recommendations 41 Acknowledgements 43 5.0 REFERENCES 44 i List of Maps, Tables and Appendices Map 1. Distribution of all Area Searches in Priority Locations, Targeted Surveys, and Opportunistic Surveys conducted in the Mojave National Preserve, 2002 – 2005. 15 Table 1. Checklist of vascular plant taxa known to occur in the Manzanar Historic Site. -
Seed Morphology of the Genus Hyoscyamus L. in Turkey and Its Systematic Significance
Kaya, et. al. Acta Microscopica Vol. 25, No.2, 2016, pp. 48- 55 Regular Article SEED MORPHOLOGY OF THE GENUS HYOSCYAMUS L. IN TURKEY AND ITS SYSTEMATIC SIGNIFICANCE A. Kaya a*, F. Satıl b, M. Aslan c aDepartment of Pharmaceutical Botany, Faculty of Pharmacy, Anadolu University, 26470 Eskişehir, Turkey. bDepartment of Biology, Faculty of Science & Art, Balıkesir University, 10145 Balıkesir, Turkey. cDepartment of Biology, Faculty of Science & Art, Harran University, 63300 Şanlıurfa, Turkey. *Corresponding author’s e-mail: [email protected], tel: +902223350580, fax: +902223350750 Received: Agosto 2015. Accepted: Marzo 2016. Published: Junio 2016. ABSTRACT The seed morphology of six species, representing genera of Hyoscyamus L. (Solanaceae) in Turkey was investigated using a binocular stereomicroscope and scanning electron microscopy (SEM), to determine the significance of seed coat features as taxonomic characters. Macro and micromorphological characters, including seed shape, size, hilum position and character, seed coat appearance, cell shape, sculpture characteristics of cell walls and wall ornemantation are presented. The results indicate that the seed coat sculpture is cerebelloid in H. pussillus and reticulate or reticulate– puzzle in all the remaining species. Two types of testal cells can be identified based on their general shape and linearity of the anticlinal walls. In one type, the cell shape is oblong to subpolygonal, with the anticlinal wall being sinuate to repandate; in the other type, the cell is triangular to subpolygonal, with the anticlinal wall straight or slightly curved. Fine ornamentation of the anticlinal walls of the testal cells varies from smooth to covered with, fibril, punctate or papillate projections. However, the size and shape of seeds and the position of hilum have partly systematic significance. -
Species Selection Maintains Self-Incompatibility E
REPORTS reduction in chemical potential by forming the are already in positions similar to those in the un- 25. The reaction volume was calculated by assuming a ring crystalline phase. In the second scenario, we derlying bulk sapphire. The oxygen collected of triangular cross section. Calculation of the volume yields ~1.7 × 10−20 cm3. Given that the number of assume that oxygen has first adsorbed to the on the LV surface is used to eradicate the facets 22 oxygen atoms per unit volume of a-Al2O3 is 8.63 × 10 LS interface, driven by the reduction in inter- at the outer, top rim of the nanowires once a atoms cm−3, the number of oxygen atoms contained face energy (24, 28), having diffused along the complete (0006) layer is formed. It is this process within the reaction volume is ~1.46 × 103 atoms. The interface from the triple junction. Once oxygen that is the rate-limiting step. number of oxygen atoms needed to deposit a monolayer of close-packed oxygen at the LS (0001) interface was adsorbs, a critical-size nucleus (in the form of calculated by assuming a square and a circular shape a step) forms at the triple junction and sweeps of the interfaces. The area density of a hexagonal close- References and Notes − across the LS (0001) interface, forming a new packed oxygen layer is 1.6 × 1015 atoms cm 2. The 1. E. I. Givargizov, J. Cryst. Growth 31, 20 (1975). a amount of oxygen needed to deposit a monolayer of (0006) layer of -Al2O3 in its wake. -
Focused Fall Special-Status Plant Survey for the Soda Mountain Solar Project, San Bernardino County, California
Focused Fall Rare Plant Survey Soda Mountain Solar Project BLM Case # CACA49584 San Bernardino County, California October-November 2012 Prepared for: Bureau of Land Management Barstow Field Office 2601 Barstow, CA 92311 Prepared by: C.S. Ecological Surveys and Assessments 11331 Star Pine Road Truckee, CA 96161 Under Contract to: Panorama Environmental Inc. One Embarcadero Center, #740 San Francisco, CA 94111 Executive Summary This report presents the results of focused botanical surveys for fall-flowering rare plants at the proposed Soda Mountain Solar Project (SMS). Transect-based complete pedestrian surveys of the approximately 4,075-acre SMS botanical survey area were conducted from October 24 through November 5, 2012. The surveys generally complied with the botanical survey guidelines of the California Department of Fish and Game (CDFG), the California Native Plant Society (CNPS), the U.S. Fish and Wildlife Service (USFWS), and the Bureau of Land Management (BLM), but differed from these protocols in that only late-season surveys were conducted. The survey work plan was approved by both BLM and CDFG prior to performing surveys. Pre-field research was conducted to select rare plant species with potential to be found within the survey area. The list of potentially occurring rare plants was derived from several sources including the California Natural Diversity Database, the CNPS On-line Inventory, and the California Consortium of Herbaria. Fifteen late summer and fall-flowering rare plant species were determined to have potential to occur within the survey area based on habitat preferences and known distribution. No federal or state-listed plant taxa were observed. -
Rare Plants Survey Report – Proposed FRTC Expansion
Final Rare Plant Survey Report in Support of the Proposed Fallon Range Training Complex Expansion, Nevada December 2019 Prepared for: Naval Facilities Engineering Command, Southwest San Diego, CA Prepared by: ManTech International Corporation Environmental, Range, and Sustainability Services Lompoc and Solana Beach, CA Contract N62742-14-D-1863: Task Orders FZNG and FZNG, Modification 4 Cover Top left: Eastwood milkweed (Asclepias eastwoodiana) (photo by M. Cloud-Hughes, ManTech) Bottom right: Reese River phacelia (Phacelia glaberrima) (photo by M. Cloud-Hughes, ManTech) Rare Plants Survey Report – Proposed FRTC Expansion TABLE OF CONTENTS 1.0 INTRODUCTION ................................................................................................................................. 1 2.0 NATURAL HISTORY ............................................................................................................................ 4 2.1 Great Basin Geologic Context ....................................................................................................... 6 2.2 Survey Area General Vegetation Characteristics .......................................................................... 6 3.0 METHODS .......................................................................................................................................... 7 3.1 Pre-field Data Collection and Review ............................................................................................ 7 3.2 Field Methods ............................................................................................................................ -
2Nd Edition) California Native Plant Society April 1980 COUNTY and ISLAND CODES
INVENTORY of RARE AND ENDANGERED VASCULAR PLANTS of CALIFORNIA , Special Publication No. 1 (2nd Edition) California Native Plant Society April 1980 COUNTY AND ISLAND CODES 1 Alameda 35 San Benito 2 Alpine 36 San Bernardino 3 Amador 37 San Diego 4 Butte 38 San Francisco 5 Calaveras 39 San Joaquin 6 Colusa 40 San Luis Obispo 7 Contra Costa 41 San Mateo 8 Del orte 42 Santa Barbara 9 El Dorado 43 Santa Clara 10 Fresno 44 Santa Cruz 11 Glenn 45 Shasta 12 Humboldt 46 Sierra 13 Imperial 47 Siskiyou 14 Inyo 48 Solano 15 Kern 49 Sonoma 16 Kings 50 Stanislaus 17 Lake 51 Sutter 18 Lassen 52 Tehama 19 Los Angeles 53 Trinity 20 Madera 54 Tulare 21 Marin 55 Tuolumne 22 Mariposa 56 Ventura 23 Mendocino 57 Yolo 24 Merced 58 Yuba 25 Modoc 59 Anacapa Islands (Ventura County) 26 Mono 60 San Clemente Island (Los Angeles County) 27 Monterey 61 San Miguel Island (Santa Barbara County) 28 Napa 62 San Nicolas Island (Ventura County) 29 Nevada 63 Santa Barbara Island (Santa Barbara County) 30 Orange 64 Santa Catalina Island (Los Angeles County) 31 Placer 65 Santa Cruz Island (Santa Barbara County) 32 Plumas 66 Santa Rosa Island (Santa Barbara County) 33 Rivers;de 67 Farallon Islands (San Francisco County) 34 Sacramento ABBREVIATIONS AND SYMBOLS AZ -Arizona SO-Sonora, Mexico BA -Baja California, Mexico ST-Smithsonian threatened plant CE -California endangered plant SX-Smithsonian extinct plant CR -California rare plant FL -federally listed plant GU-Isla Guadalupe, Baja California NV - evada +-this state and beyond OR-Oregon ++-widespread outside California SE -Smithsonian endangered plant *-extinct or extirpated The cover illustration of Rai//ardella pringlei, a Trinity and Siskiyou Co. -
American Journal of Botany
American Journal of Botany Repeated evolution of a morphological novelty: a phylogenetic analysis of the inflated fruiting calyx in the Physalideae tribe (Solanaceae) --Manuscript Draft-- Manuscript Number: AJB-D-18-00349R2 Full Title: Repeated evolution of a morphological novelty: a phylogenetic analysis of the inflated fruiting calyx in the Physalideae tribe (Solanaceae) Short Title: Fruiting calyx evolution in Physalideae Article Type: Research Article Section/Category: Evolution & Phylogeny Corresponding Author: Rocío Deanna, Ph.D. Instituto Multidisciplinario de Biología Vegetal (IMBIV, CONICET - UNC) Córdoba, Non-US/Non-Canadian ARGENTINA Corresponding Author E-Mail: [email protected] First Author: Rocío Deanna, Ph.D. Order of Authors: Rocío Deanna, Ph.D. Maximilien D. Larter Gloria Estela Barboza Stacey D. Smith Abstract: The evolution of novel fruit morphologies has been integral to the success of angiosperms. The inflated fruiting calyx, in which the balloon-like calyx swells to completely surround the fruit, has evolved repeatedly across angiosperms and is postulated to aid in protection and dispersal. Here we investigate the evolution of this trait in the tomatillos and their allies (Physalideae, Solanaceae). The Physalideae phylogeny was estimated using four regions (ITS, LEAFY, trnL-F, waxy) with maximum likelihood (ML) and Bayesian Inference. Under the best fitting ML model of trait evolution, we estimated ancestral states along with the numbers of gains and losses of fruiting calyx accrescence and inflation with Bayesian stochastic mapping. Also, phylogenetic signal in calyx morphology was examined with two metrics (parsimony score and Fritz and Purvis’ D). Based on our well-resolved and densely sampled phylogeny, we infer that calyx evolution has proceeded in a stepwise and directional fashion, from non-accrescent, to accrescent, to inflated. -
1 1.0 INTRODUCTION 1.1 National Inventory and Monitoring Program
Inventory of Plants at MOJA and MANZ - Final Report 2006 Andre Botanical Consulting Solicitation # Q2280201178 PO Box 27, Kelso, CA 92309 1.0 INTRODUCTION 1.1 National Inventory and Monitoring Program and Mojave Network The Servicewide Inventory and Monitoring (I&M) Program, initiated by the National Park Service (NPS) in 1992, was created to “chart the course and provide the leadership and information resources needed by the NPS to preserve and protect the natural resources placed under its trust by the American people into the 21 st Century and beyond” (National Park Service 1992). The national program coordinates systematic efforts to acquire 12 basic data sets for parks with significant natural resources including basic information on air and water quality; base cartography; weather data; geology; soil and vegetation maps; a natural resource bibliography; and information about the occurrence, relative abundance, and distribution of vertebrate and vascular plant species. In recognition of the need for good scientific information on resources in the NPS, Congress passed the National Parks Omnibus Management Act in 1998, and mandated a “program of inventory and monitoring of National Park System resources to establish baseline information and to provide information on the long-term trends in the condition of National Park System resources” (NPS 1999). Congress also provided funding to implement the I&M Program through the Natural Resource Challenge and Natural Resource Initiative. Numerous guidance documents and tools have been developed by the National I&M Program and provided to park managers to assist in the planning and development of standardized inventory and monitoring programs and facilitate information sharing.