Chironomids' Relationship with Aeromonas Species
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Delineation of Aeromonas Hydrophila Pathotypes by Dectection of Putative Virulence Factors Using Polymerase Chain Reaction and N
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DigitalCommons@Kennesaw State University Kennesaw State University DigitalCommons@Kennesaw State University Master of Science in Integrative Biology Theses Biology & Physics Summer 7-20-2015 Delineation of Aeromonas hydrophila Pathotypes by Dectection of Putative Virulence Factors using Polymerase Chain Reaction and Nematode Challenge Assay John Metz Kennesaw State University, [email protected] Follow this and additional works at: http://digitalcommons.kennesaw.edu/integrbiol_etd Part of the Integrative Biology Commons Recommended Citation Metz, John, "Delineation of Aeromonas hydrophila Pathotypes by Dectection of Putative Virulence Factors using Polymerase Chain Reaction and Nematode Challenge Assay" (2015). Master of Science in Integrative Biology Theses. Paper 7. This Thesis is brought to you for free and open access by the Biology & Physics at DigitalCommons@Kennesaw State University. It has been accepted for inclusion in Master of Science in Integrative Biology Theses by an authorized administrator of DigitalCommons@Kennesaw State University. For more information, please contact [email protected]. Delineation of Aeromonas hydrophila Pathotypes by Detection of Putative Virulence Factors using Polymerase Chain Reaction and Nematode Challenge Assay John Michael Metz Submitted in partial fulfillment of the requirements for the Master of Science Degree in Integrative Biology Thesis Advisor: Donald J. McGarey, Ph.D Department of Molecular and Cellular Biology Kennesaw State University ABSTRACT Aeromonas hydrophila is a Gram-negative, bacterial pathogen of humans and other vertebrates. Human diseases caused by A. hydrophila range from mild gastroenteritis to soft tissue infections including cellulitis and acute necrotizing fasciitis. When seen in fish it causes dermal ulcers and fatal septicemia, which are detrimental to aquaculture stocks and has major economic impact to the industry. -
An Update on the Genus Aeromonas: Taxonomy, Epidemiology, and Pathogenicity
microorganisms Review An Update on the Genus Aeromonas: Taxonomy, Epidemiology, and Pathogenicity Ana Fernández-Bravo and Maria José Figueras * Unit of Microbiology, Department of Basic Health Sciences, Faculty of Medicine and Health Sciences, IISPV, University Rovira i Virgili, 43201 Reus, Spain; [email protected] * Correspondence: mariajose.fi[email protected]; Tel.: +34-97-775-9321; Fax: +34-97-775-9322 Received: 31 October 2019; Accepted: 14 January 2020; Published: 17 January 2020 Abstract: The genus Aeromonas belongs to the Aeromonadaceae family and comprises a group of Gram-negative bacteria widely distributed in aquatic environments, with some species able to cause disease in humans, fish, and other aquatic animals. However, bacteria of this genus are isolated from many other habitats, environments, and food products. The taxonomy of this genus is complex when phenotypic identification methods are used because such methods might not correctly identify all the species. On the other hand, molecular methods have proven very reliable, such as using the sequences of concatenated housekeeping genes like gyrB and rpoD or comparing the genomes with the type strains using a genomic index, such as the average nucleotide identity (ANI) or in silico DNA–DNA hybridization (isDDH). So far, 36 species have been described in the genus Aeromonas of which at least 19 are considered emerging pathogens to humans, causing a broad spectrum of infections. Having said that, when classifying 1852 strains that have been reported in various recent clinical cases, 95.4% were identified as only four species: Aeromonas caviae (37.26%), Aeromonas dhakensis (23.49%), Aeromonas veronii (21.54%), and Aeromonas hydrophila (13.07%). -
Identification and Characterization of Aeromonas Species Isolated from Ready- To-Eat Lettuce Products
Master's thesis Noelle Umutoni Identification and Characterization of Aeromonas species isolated 2019 from ready-to-eat lettuce Master's thesis products. Noelle Umutoni NTNU May 2019 Norwegian University of Science and Technology Faculty of Natural Sciences Department of Biotechnology and Food Science Identification and Characterization of Aeromonas species isolated from ready- to-eat lettuce products. Noelle Umutoni Food science and Technology Submission date: May 2019 Supervisor: Lisbeth Mehli Norwegian University of Science and Technology Department of Biotechnology and Food Science Preface This thesis covers 45 ECTS-credits and was carried out as part of the M. Sc. programme for Food and Technology at the institute of Biotechnology and Food Science, faculty of natural sciences at the Norwegian University of Science and Technology in Trondheim in spring 2019. First, I would like to express my gratitude to my main supervisor Associate professor Lisbeth Mehli. Thank you for the laughs, advice, and continuous encouragement throughout the project. Furthermore, appreciations to PhD Assistant professor Gunn Merethe Bjørge Thomassen for valuable help in the lab. Great thanks to my family and friends for their patience and encouragement these past years. Thank you for listening, despite not always understanding the context of my studies. A huge self-five to myself, for putting in the work. Finally, a tremendous thank you to Johan – my partner in crime and in life. I could not have done this without you. You kept me fed, you kept sane. I appreciate you from here to eternity. Mama, we made it! 15th of May 2019 Author Noelle Umutoni I Abstract Aeromonas spp. -
Septic Shock Caused by Aeromonas Daca: a Bacterium That We Have Neglected in the Past
Septic Shock Caused By Aeromonas Daca: A Bacterium That We Have Neglected In The Past. Qiquan Zhao Chongqing University of Medical Science Clinical College: The First Aliated Hospital of Chongqing Medical University Yuguo Zhou Chongqing University of Medical Science Clinical College: The First Aliated Hospital of Chongqing Medical University Xiaoli Han ( [email protected] ) Chongqing University of Medical Science Clinical College: The First Aliated Hospital of Chongqing Medical University https://orcid.org/0000-0002-5421-2135 Li Jian Chongqing University of Medical Science Clinical College: The First Aliated Hospital of Chongqing Medical University Case report Keywords: Aeromonas daca, septic shock, case report Posted Date: April 28th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-440245/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/9 Abstract Introduction: For decades, Aeromonas daca has often been mistaken for Aeromonas hydrophila by phenotypic identication systems and shows obvious characteristics of virulence. To our knowledge, a total of two English-language studies with relatively complete data were retrieved. Case presentation: The patient, a 26-year-old male with no underlying disease, was admitted to our hospital for 3 days because of cough, expectoration and shortness of breath. According to blood and lavage uid cultures and next-generation sequencing (NGS), the patient was diagnosed with an A. daca infection. He soon deteriorated to a critical condition complicated with septic shock and died after active rescue treatment. Conclusions: A. daca infection is lethal, and an accurate taxonomy can improve our understanding of the epidemiological distribution and virulence potential of this human pathogen. -
Novel Magnetite-Producing Magnetotactic Bacteria Belonging to the Gammaproteobacteria
The ISME Journal (2012) 6, 440–450 & 2012 International Society for Microbial Ecology All rights reserved 1751-7362/12 www.nature.com/ismej ORIGINAL ARTICLE Novel magnetite-producing magnetotactic bacteria belonging to the Gammaproteobacteria Christopher T Lefe`vre1,4, Nathan Viloria1, Marian L Schmidt1,5, Miha´ly Po´sfai2, Richard B Frankel3 and Dennis A Bazylinski1 1School of Life Sciences, University of Nevada at Las Vegas, 4505 Maryland Parkway, Las Vegas, NV, USA; 2Department of Earth and Environmental Sciences, University of Pannonia, Veszpre´m, Hungary and 3Department of Physics, California Polytechnic State University, San Luis Obispo, CA, USA Two novel magnetotactic bacteria (MTB) were isolated from sediment and water collected from the Badwater Basin, Death Valley National Park and southeastern shore of the Salton Sea, respectively, and were designated as strains BW-2 and SS-5, respectively. Both organisms are rod-shaped, biomineralize magnetite, and are motile by means of flagella. The strains grow chemolithoauto- trophically oxidizing thiosulfate and sulfide microaerobically as electron donors, with thiosulfate oxidized stoichiometrically to sulfate. They appear to utilize the Calvin–Benson–Bassham cycle for autotrophy based on ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO) activity and the presence of partial sequences of RubisCO genes. Strains BW-2 and SS-5 biomineralize chains of octahedral magnetite crystals, although the crystals of SS-5 are elongated. Based on 16S rRNA gene sequences, both strains are phylogenetically affiliated with the Gammaproteobacteria class. Strain SS-5 belongs to the order Chromatiales; the cultured bacterium with the highest 16S rRNA gene sequence identity to SS-5 is Thiohalocapsa marina (93.0%). -
Evaluation of Pathogenic Potential of Aeromonas Spp. Strains Using in Vitro Methodologies
Catarina Ribeiro Correia Degree in Cellular and Molecular Biology Evaluation of pathogenic potential of Aeromonas spp. strains using in vitro methodologies Dissertation to obtain a Master Degree in Molecular Genetics and Biomedicine Supervisor: Ana Luísa Ferreira Simplício, Ph.D IBET/ITQB-UNL Co-Supervisor: Maria Teresa Crespo, Ph.D IBET/ITQB-UNL Júri: Presidente: Prof. Doutora Paula Maria Theriaga Mendes Bernardo Gonçalves Arguente: Doutora Teresa Maria Leitão Semedo-Lemsaddek Vogal: Doutora Ana Luísa Ferreira Simplício December 2013 [this page intentionally left blank] Catarina Ribeiro Correia Degree in Cellular and Molecular Biology Evaluation of pathogenic potential of Aeromonas spp. strains using in vitro methodologies Dissertation to obtain a Master Degree in Molecular Genetics and Biomedicine Supervisor: Ana Luísa Ferreira Simplício, Ph.D IBET/ITQB-UNL Co-Supervisor: Maria Teresa Crespo, Ph.D IBET/ITQB-UNL Júri: Presidente: Prof. Doutora Paula Maria Theriaga Mendes Bernardo Gonçalves Arguente: Doutora Teresa Maria Leitão Semedo-Lemsaddek Vogal: Doutora Ana Luísa Ferreira Simplício December 2013 [this page intentionally left blank] Evaluation of pathogenic potential of Aeromonas spp. strains using in vitro methodologies Copyright Catarina Ribeiro Correia, FCT/UNL, UNL A Faculdade de Ciências e Tecnologia e a Universidade Nova de Lisboa têm o direito, perpétuo e sem limites geográficos, de arquivar e publicar esta dissertação através de exemplares impressos reproduzidos em papel ou de forma digital, ou por qualquer outro meio conhecido ou que venha a ser inventado, e de a divulgar através de repositórios científicos e de admitir a sua cópia e distribuição com objectivos educacionais ou de investigação, não comerciais, desde que seja dado crédito ao autor e editor. -
A Case Report and Literature Review of a Death Caused by Aeromonas Daca Complicated with Septic Shock
A case report and literature review of a death caused by Aeromonas daca complicated with septic shock Qiquan Zhao The First Aliated Hospital of Chongqing Medical University https://orcid.org/0000-0003-1255-4660 Xiaoli Han ( [email protected] ) Department of Respiratory and Critical Care Medicine, The First Aliated Hospital of Chongqing Medical University, 1 Youyi Road, Yuzhong District, Chongqing, P. R. China https://orcid.org/0000-0002- 5421-2135 Case report Keywords: Aeromonas daca, septic shock, diffuse alveolar hemorrhage Posted Date: December 3rd, 2020 DOI: https://doi.org/10.21203/rs.3.rs-118279/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/9 Abstract Background: For decades, Aeromonas daca has often been mistaken for Aeromonas hydrophila by phenotypic identication systems and shows obvious characteristics of virulence. To our knowledge, a total of two English-language studies with relatively complete data were retrieved. Case presentation: The patient, a 26-year-old male with no underlying disease, was admitted to our hospital for 3 days because of cough, expectoration and shortness of breath. According to blood and lavage uid cultures and next-generation sequencing (NGS), the patient was diagnosed with an A. daca infection. He soon deteriorated to a critical condition complicated with septic shock and died after active rescue treatment. Conclusions: A. daca infection is lethal, and an accurate taxonomy can improve our understanding of the epidemiological distribution and virulence potential of this human pathogen. Third-generation cephalosporins and carbapenems should be used cautiously in the treatment of severe A. -
Metagenomic Screening of Microbiomes Identifies Pathogen
Li Environ Sci Eur (2019) 31:37 https://doi.org/10.1186/s12302-019-0217-x RESEARCH Open Access Metagenomic screening of microbiomes identifes pathogen-enriched environments Xiaofang Li* Abstract Background: Human pathogens are widespread in the environment, and examination of pathogen-enriched environments in a rapid and high-throughput fashion is important for development of pathogen-risk precautionary measures. In this study, a Local BLASTP procedure for metagenomic screening of pathogens in the environment was developed using a toxin-centered database. A total of 69 microbiomes derived from ocean water, freshwater, soils, feces, and wastewater were screened using the Local BLASTP procedure. Bioinformatic analysis and Canonical Cor- respondence Analysis were conducted to examine whether the toxins included in the database were taxonomically associated. Results: The specifcity of the Local BLASTP method was tested with known and unknown toxin sequences. Bioin- formatic analysis indicated that most toxins were phylum-specifc but not genus-specifc. Canonical Correspondence Analysis implied that almost all of the toxins were associated with the phyla of Proteobacteria, Nitrospirae and Firmi- cutes. Local BLASTP screening of the global microbiomes showed that pore-forming RTX toxin, ornithine carbamoyl- transferase ArgK, and RNA interferase Rel were most prevalent globally in terms of relative abundance, while polluted water and feces samples were the most pathogen-enriched. Conclusions: The Local BLASTP procedure was applied for rapid detection of toxins in environmental samples using a toxin-centered database built in this study. Screening of global microbiomes in this study provided a quantitative estimate of the most prevalent toxins and most pathogen-enriched environments. -
Recent Insights Into Aeromonas Salmonicida and Its Bacteriophages in Aquaculture: a Comprehensive Review
J. Microbiol. Biotechnol. 2020. 30(10): 1443–1457 https://doi.org/10.4014/jmb.2005.05040 Review Recent Insights into Aeromonas salmonicida and Its Bacteriophages in Aquaculture: A Comprehensive Review Seon Young Park1,2†, Jee Eun Han3†, Hyemin Kwon1, Se Chang Park4*, and Ji Hyung Kim1,5* 1Infectious Disease Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea 2Division of Animal and Dairy Sciences, College of Agriculture and Life Science, Chungnam National University, Daejeon 34134, Republic of Korea 3Laboratory of Aquatic Biomedicine, College of Veterinary Medicine, Kyungpook National University, Daegu, 41566, Republic of Korea 4Laboratory of Aquatic Biomedicine, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul National University, Seoul 08826, Republic of Korea 5Department of Biomolecular Science, KRIBB School of Bioscience, Korea University of Science and Technology (UST), Daejeon 34141, Republic of Korea The emergence and spread of antimicrobial resistance in pathogenic bacteria of fish and shellfish have caused serious concerns in the aquaculture industry, owing to the potential health risks to humans and animals. Among these bacteria, Aeromonas salmonicida, which is one of the most important primary pathogens in salmonids, is responsible for significant economic losses in the global aquaculture industry, especially in salmonid farming because of its severe infectivity and acquisition of antimicrobial resistance. Therefore, interest in the use of alternative approaches to prevent and control A. salmonicida infections has increased in recent years, and several applications of bacteriophages (phages) have provided promising results. For several decades, A. salmonicida and phages infecting this fish pathogen have been thoroughly investigated in various research areas including aquaculture. -
From Microbiology and Tumor Biology Center Karolinska Institutet, Stockholm, Sweden
From Microbiology and Tumor Biology Center Karolinska Institutet, Stockholm, Sweden Health hazards associated with dissemination of bacterial strains in waste water recycling By Mokhlasur Rahman Stockholm 2005 All previously published papers were reproduced with permission from the publisher. Published and printed by Karolinska University Press Box 200, SE-171 77 Stockholm, Sweden © Mokhlasur Rahman, 2005 ISBN 91-7140-468-6 This work is dedicated TO MY FAMILY ABSTRACT Treated waste effluents with low levels of chemical and microbiological contents are used for domestic, industrial, agricultural and aquacultural purposes worldwide, and it is estimated that one tenth or more of the world’s population consume food produced through irrigation with wastewater. Treated hospital waste effluents may contain pathogenic and drug resistant bacteria, which constitutes the most dangerous single risk factor for dissemination of pathogenic and drug resistant organisms to the environment. This thesis focuses on the possibility of persistence and transmission of pathogenic and drug resistant bacteria like Aeromonas and Enterococcus from wastewater to environment and to humans, especially in relation to a sewage treatment process based on waste water recycling. In one study (Paper I), we have shown that a prevalent ampicillin and ciprofloxacin resistant clonal lineage of Enterococcus faecium in Swedish hospital sewage water may be transmitted from hospital patients to hospital sewage water. Recycling of hospital sewage water may in the second step disseminate the disease-causing organisms to the environment and in the third step to the human food chain. In other studies (Papers III, V), we have investigated the persistence of Aeromonas in a duckweed aquaculture based hospital sewage water treatment plant, where sewage grown duckweed is used as fish food. -
Taxonomy, Virulence Genes and Antimicrobial Resistance Of
Zhou et al. BMC Infectious Diseases (2019) 19:158 https://doi.org/10.1186/s12879-019-3766-0 RESEARCH ARTICLE Open Access Taxonomy, virulence genes and antimicrobial resistance of Aeromonas isolated from extra-intestinal and intestinal infections Yanyan Zhou1 ,LiYu2, Zheng Nan1, Pingping Zhang1, Biao Kan3, Donghui Yan1* and Jianrong Su1* Abstract Background: Clinical characteristics (taxonomy, virulence genes and antimicrobial resistance ) of Aeromonas in isolated from extra-intestinal and intestinal infections were investigated to describe epidemiology, associated virulence factors and optimal therapy options. Methods: Clinical samples (n = 115) of Aeromonas were collected from a general hospital in Beijing between the period 2015 and 2017. Taxonomy was investigate by Multilocus phylogenetic analysis (MLPA), 10 putative virulence factors by use of polymerase chain reaction (PCR) and antimicrobial resistance to 15 antibiotics by use of the microbroth dilution method. Results: The most common species of Aeromonas detected in samples of intestinal tract included; A. caviae (43.9%), A. veronii (35.7%), and A. dhakensis (12.2%). Prevalent species of Aeromonas collected from extra-intestinal infections included; A. hydrophila (29.4%), A. caviae (29.4%), and A. dhakensis (23.5%). A. hydrophila were detected in 1% of stool samples and 29.4% (5/17) of extra-intestinal infections. A. hydrophila strains in extra-intestinal infections were related to malignancy. The most common medical conditions among patients with Aeromonas infections included malignancy and liver-transplant related cholecystitis. Multiple drug resistance (MDR) was prevalent in extra-intestinal isolates (82.3%, 14/17) and was greater than the prevalence in intestinal isolates (30.6%, 30/98) (P < 0.05). -
Aeromonas Dhakensis, an Increasingly Recognized Human Pathogen
fmicb-07-00793 May 25, 2016 Time: 16:1 # 1 View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Frontiers - Publisher Connector REVIEW published: 27 May 2016 doi: 10.3389/fmicb.2016.00793 Aeromonas dhakensis, an Increasingly Recognized Human Pathogen Po-Lin Chen1,2, Brigitte Lamy3,4 and Wen-Chien Ko1,2* 1 Department of Internal Medicine, National Cheng Kung University Hospital, College of Medicine, National Cheng Kung University, Tainan, Taiwan, 2 Center for Infection Control, National Cheng Kung University Hospital, Tainan, Taiwan, 3 Laboratoire de Bactériologie-Virologie, Équipe Pathogènes Hydriques Santé Environnements, UMR 5569 HydroSciences Montpellier, Université de Montpellier, Montpellier, France, 4 Laboratoire de Bactériologie, Centre Hospitalier Régional Universitaire de Montpellier, Montpellier, France Aeromonas dhakensis was first isolated from children with diarrhea in Dhaka, Bangladesh and described in 2002. In the past decade, increasing evidence indicate this species is widely distributed in the environment and can cause a variety of infections both in human and animals, especially in coastal areas. A. dhakensis is often misidentified as A. hydrophila, A. veronii, or A. caviae by commercial phenotypic tests in the clinical laboratory. Correct identification relies on molecular methods. Increasingly used matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) may be able to identify Aeromonas specie rapidly and accurately. A. dhakensis has shown its potent virulence in different animal models and clinical Edited by: infections. Although several virulence factors had been reported, no single mechanism Yuji Morita, is conclusive. Characteristically A. dhakensis is the principal species causing soft tissue Aichi Gakuin University, Japan infection and bacteremia, especially among patients with liver cirrhosis or malignancy.